mRNA_P-wetherbeei_contig701.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig701.1.1
Unique NamemRNA_P-wetherbeei_contig701.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig701.1.1 vs. uniprot
Match: A0A835YHS2_9STRA (DHC_N2 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YHS2_9STRA)

HSP 1 Score: 123 bits (309), Expect = 3.560e-27
Identity = 122/339 (35.99%), Postives = 159/339 (46.90%), Query Frame = 1 
Query:    7 GALEDGVDMCRQELADLDGAAEMFAGDATCLAVVAAGGAH-LPHPLRAALLRR---------VRGAVGTASKDGVGGRQSVWGGGCGGYGGASFFEAGAGGSSSSQ--------LGLERFCFEQFVAGSLTNVMQLEEWSLAGLGSNSGGGSGRRNSAGGAAIAKGLNRAGA--LPFHPAFLDAAVLTLVTDKWPLLVDPEGVAERWLPTVYGAALVLPPVVAARATSTEVRHAAAAGLVLVVSHAQAGLHPDLALFLSHHAVAXXXXXXXXXENWAASMAATAAPGFRIVLLSDRTP----GPRREPFAVESSDADAPAVVPLEACPAAAAAVQVIHF 951
            GAL D V MC QEL+D+  AA ++AGDA     + AGGA  LP   RAAL R           RG    +S+   GG             G S   A   G +S +        +   R     F  G+LT V Q++ W+ A   +++   SG   +A  A +  G   + A  LPFHPAF+DAA+LTL T   PLLVDP GVA RWL   Y  + +LPPV AAR  ++ +  AA  G VL+VS  +AG+H  L  FL+   V               S  A    GF++VLL+   P    G                A+  + +CPAA AAVQVI F
Sbjct: 5243 GALRDAVAMCAQELSDIAAAARVYAGDAAVFCALLAGGAAALP---RAALRRAQXXXXXXXXARGCP-VSSRSSSGGXXXXXX-----XXGGSMLPADTDGDTSVEDAEVPDEVMPAARLALHDFCTGALTGVQQVQVWATASY-ADATAASGAAAAADAATLPFGAPTSAAFGLPFHPAFVDAALLTLGTPLVPLLVDPRGVALRWLSKAYQGSALLPPVPAARVVASLLADAARHGRVLLVSAVEAGVHAHLTHFLAARTVLGPC---------GGSGGALPHQGFKLVLLARAVPHVDSGXXXXXXXXXXXXXXXXALQQIGSCPAAMAAVQVIRF 5562
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig701.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835YHS2_9STRA3.560e-2735.99DHC_N2 domain-containing protein n=1 Tax=Tribonema... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig701contigP-wetherbeei_contig701:12..1280 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1047
Hectar predicted targeting categoryother localisation
Exons2
Cds size1047
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186952.2196288-CDS-P-wetherbeei_contig701:11..4721683186952.2196288-CDS-P-wetherbeei_contig701:11..472Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig701 12..472 +
1683186952.2284682-CDS-P-wetherbeei_contig701:694..12801683186952.2284682-CDS-P-wetherbeei_contig701:694..1280Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig701 695..1280 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig701.1.1prot_P-wetherbeei_contig701.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig701 12..1280 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig701.1.1

>prot_P-wetherbeei_contig701.1.1 ID=prot_P-wetherbeei_contig701.1.1|Name=mRNA_P-wetherbeei_contig701.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=349bp
MGGALEDGVDMCRQELADLDGAAEMFAGDATCLAVVAAGGAHLPHPLRAA
LLRRVRGAVGTASKDGVGGRQSVWGGGCGGYGGASFFEAGAGGSSSSQLG
LERFCFEQFVAGSLTNVMQLEEWSLAGLGSNSGGGSGRRNSAGGAAIAKG
LNRAGALPFHPAFLDAAVLTLVTDKWPLLVDPEGVAERWLPTVYGAALVL
PPVVAARATSTEVRHAAAAGLVLVVSHAQAGLHPDLALFLSHHAVAGGGG
GGGGSENWAASMAATAAPGFRIVLLSDRTPGPRREPFAVESSDADAPAVV
PLEACPAAAAAVQVIHFGGHDRVSGGAAAAAAAATISEKDSNGSNTGNS
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mRNA from alignment at P-wetherbeei_contig701:12..1280+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig701.1.1 ID=mRNA_P-wetherbeei_contig701.1.1|Name=mRNA_P-wetherbeei_contig701.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1269bp|location=Sequence derived from alignment at P-wetherbeei_contig701:12..1280+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGGCGGCGCGCTGGAGGACGGCGTCGACATGTGCCGCCAGGAACTGGC
GGACCTGGACGGCGCGGCGGAAATGTTTGCTGGAGACGCGACGTGCCTGG
CGGTCGTAGCGGCTGGCGGCGCCCACCTGCCGCATCCGCTGCGCGCCGCG
TTGCTGCGGCGCGTCCGCGGCGCCGTGGGGACGGCGAGCAAGGACGGGGT
CGGCGGCCGCCAATCGGTTTGGGGCGGTGGCTGCGGCGGCTACGGCGGTG
CCAGCTTTTTCGAAGCAGGAGCCGGCGGTTCTTCATCTTCCCAATTGGGG
CTCGAACGCTTCTGCTTCGAGCAGTTTGTCGCCGGCTCGCTTACAAACGT
CATGCAGCTCGAAGAATGGTCGCTGGCCGGACTCGGAAGCAATAGTGGCG
GGGGAAGTGGCCGCAGAAACAGTGCTGGTGGCGCCGCTATCGCCAAAGGC
TTGAACCGAGCGTCGAGCCCAAAGGCGACGGCTACAGCAGCAACGGTAGC
AGCGCCACACGATGCCGTTTTAGCCGCCACAGCCGCTAGCGCCGTCTCTA
AGGGCGGAAATCATACGGCGGCAGCCAGCACCGAGACCAGTACTCACGAA
GGTTCTGCCACTGCTGCCAGTGCCGCCGCCGTCTCCATTACCGCCACCGA
GCCAGACGCTGTCGCCGTGGACTGGGCAGCGAGCGGCGCGCTTCCCTTCC
ACCCAGCGTTTCTGGACGCCGCCGTCCTGACACTGGTCACTGACAAGTGG
CCGCTTCTGGTGGATCCCGAGGGCGTGGCGGAGCGGTGGCTGCCGACCGT
CTACGGCGCGGCGCTGGTGCTACCGCCCGTCGTCGCGGCCCGCGCCACTT
CCACCGAGGTCCGCCATGCGGCCGCTGCCGGGCTCGTGCTGGTCGTCTCC
CACGCTCAGGCTGGACTTCACCCGGACCTGGCCCTCTTCCTCAGCCACCA
CGCCGTCGCAGGTGGCGGCGGCGGTGGCGGCGGCAGCGAAAACTGGGCCG
CTTCAATGGCTGCAACCGCAGCGCCAGGCTTCCGCATCGTCTTGTTGTCG
GACCGGACACCGGGCCCGCGGCGGGAGCCATTCGCCGTGGAGAGCAGCGA
TGCCGACGCCCCAGCCGTCGTTCCGCTGGAGGCGTGCCCGGCGGCCGCGG
CGGCGGTGCAGGTCATCCACTTCGGCGGCCACGACCGGGTGAGTGGGGGC
GCCGCCGCCGCTGCTGCCGCCGCCACCATCTCCGAGAAGGACAGCAACGG
CAGTAACACCGGCAATTCT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig701:12..1280+

>mRNA_P-wetherbeei_contig701.1.1 ID=mRNA_P-wetherbeei_contig701.1.1|Name=mRNA_P-wetherbeei_contig701.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1047bp|location=Sequence derived from alignment at P-wetherbeei_contig701:12..1280+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGGCGGCGCGCTGGAGGACGGCGTCGACATGTGCCGCCAGGAACTGGC
GGACCTGGACGGCGCGGCGGAAATGTTTGCTGGAGACGCGACGTGCCTGG
CGGTCGTAGCGGCTGGCGGCGCCCACCTGCCGCATCCGCTGCGCGCCGCG
TTGCTGCGGCGCGTCCGCGGCGCCGTGGGGACGGCGAGCAAGGACGGGGT
CGGCGGCCGCCAATCGGTTTGGGGCGGTGGCTGCGGCGGCTACGGCGGTG
CCAGCTTTTTCGAAGCAGGAGCCGGCGGTTCTTCATCTTCCCAATTGGGG
CTCGAACGCTTCTGCTTCGAGCAGTTTGTCGCCGGCTCGCTTACAAACGT
CATGCAGCTCGAAGAATGGTCGCTGGCCGGACTCGGAAGCAATAGTGGCG
GGGGAAGTGGCCGCAGAAACAGTGCTGGTGGCGCCGCTATCGCCAAAGGC
TTGAACCGAGCCGGCGCGCTTCCCTTCCACCCAGCGTTTCTGGACGCCGC
CGTCCTGACACTGGTCACTGACAAGTGGCCGCTTCTGGTGGATCCCGAGG
GCGTGGCGGAGCGGTGGCTGCCGACCGTCTACGGCGCGGCGCTGGTGCTA
CCGCCCGTCGTCGCGGCCCGCGCCACTTCCACCGAGGTCCGCCATGCGGC
CGCTGCCGGGCTCGTGCTGGTCGTCTCCCACGCTCAGGCTGGACTTCACC
CGGACCTGGCCCTCTTCCTCAGCCACCACGCCGTCGCAGGTGGCGGCGGC
GGTGGCGGCGGCAGCGAAAACTGGGCCGCTTCAATGGCTGCAACCGCAGC
GCCAGGCTTCCGCATCGTCTTGTTGTCGGACCGGACACCGGGCCCGCGGC
GGGAGCCATTCGCCGTGGAGAGCAGCGATGCCGACGCCCCAGCCGTCGTT
CCGCTGGAGGCGTGCCCGGCGGCCGCGGCGGCGGTGCAGGTCATCCACTT
CGGCGGCCACGACCGGGTGAGTGGGGGCGCCGCCGCCGCTGCTGCCGCCG
CCACCATCTCCGAGAAGGACAGCAACGGCAGTAACACCGGCAATTCT
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