mRNA_P-wetherbeei_contig700.4.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig700.4.1
Unique NamemRNA_P-wetherbeei_contig700.4.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig700.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig700contigP-wetherbeei_contig700:5708..6886 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1179
Hectar predicted targeting categoryother localisation
Exons1
Cds size804
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186951.4100137-UTR-P-wetherbeei_contig700:5707..57401683186951.4100137-UTR-P-wetherbeei_contig700:5707..5740Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig700 5708..5740 +
1683186951.4276254-UTR-P-wetherbeei_contig700:6544..68861683186951.4276254-UTR-P-wetherbeei_contig700:6544..6886Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig700 6545..6886 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186951.418799-CDS-P-wetherbeei_contig700:5740..65441683186951.418799-CDS-P-wetherbeei_contig700:5740..6544Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig700 5741..6544 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig700.4.1prot_P-wetherbeei_contig700.4.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig700 5741..6544 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig700.4.1

>prot_P-wetherbeei_contig700.4.1 ID=prot_P-wetherbeei_contig700.4.1|Name=mRNA_P-wetherbeei_contig700.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=268bp
MVAVDGGVGVGGGSGVSGAAGTRWTVVDPGDGSGKMRLTITTADYLSFLH
FQAFMAYCGEQGGGGGSNGGDGGGGGEMGSTGALPPALLPPPPPALSPER
ASVCRGFGGDDSGGGGFGNGGGGGFLTDDETAPDTPRSSAGMLSPGHWSV
GNRPVSTPHARSLAGFGFEKRPLSLPLPQRRLKVPASPARGGGGDNGGGS
SSRNGRDGSGANRSRNDGRNTGDAGWSRSRSPLRPDRRRSCGGGDRDDGD
EEGSVMDEDYRPRDASV*
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mRNA from alignment at P-wetherbeei_contig700:5708..6886+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig700.4.1 ID=mRNA_P-wetherbeei_contig700.4.1|Name=mRNA_P-wetherbeei_contig700.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1179bp|location=Sequence derived from alignment at P-wetherbeei_contig700:5708..6886+ (Phaeothamnion wetherbeei SAG_119_79)
ATCAGCAGCGGCGACGGCAGCGACAGCGGCCTAATGGTGGCGGTAGATGG
CGGTGTCGGTGTCGGTGGAGGCAGCGGCGTCAGCGGGGCGGCCGGAACCC
GCTGGACGGTGGTGGATCCCGGAGACGGCTCGGGCAAGATGCGCCTTACC
ATAACCACCGCGGATTACCTTTCCTTTCTCCACTTTCAGGCCTTTATGGC
GTACTGCGGTGAACAGGGTGGTGGCGGCGGCAGTAATGGCGGCGATGGCG
GCGGCGGCGGCGAGATGGGAAGTACCGGAGCTCTACCACCGGCACTGTTG
CCTCCTCCGCCACCGGCTCTGTCCCCAGAACGAGCCAGCGTTTGTCGTGG
CTTCGGCGGCGATGACAGCGGCGGCGGCGGTTTCGGTAATGGCGGCGGCG
GTGGCTTTTTGACAGATGATGAAACCGCTCCGGACACGCCCCGGTCATCT
GCCGGAATGCTTTCGCCCGGCCATTGGTCCGTGGGAAACCGCCCAGTGTC
CACGCCGCACGCCAGGTCGTTAGCAGGCTTTGGCTTCGAGAAACGGCCCC
TTTCGCTTCCACTGCCCCAGCGGCGTCTCAAGGTTCCTGCTTCACCCGCC
CGCGGCGGTGGCGGCGACAACGGCGGCGGCAGCAGCAGCCGTAACGGCAG
GGACGGCAGTGGCGCCAACCGCAGCCGCAACGACGGCCGCAACACGGGCG
ATGCCGGCTGGTCGCGGTCACGCTCGCCCCTGCGGCCGGACCGAAGGCGG
TCGTGTGGCGGCGGAGACCGCGACGACGGCGACGAGGAGGGCTCCGTGAT
GGACGAGGATTACCGGCCGAGGGATGCATCGGTGTAGGCAAAAAGGGGGC
GGCTAATGCAACCAAGCCGAATTGCAACGAGAAACAACGGCAAGGCTTTG
CGGGGACTTGTCAAGAATGGCGAGCGCAACAAGCTCGAGGAACACGAGAA
GAGAGTAAATTAGGATAACGGATGAAACGGTTCACCATTTAGAAGCGCCG
GCTGCACTGCTGCCGCCGCCAGCTGCCGCCGCCAGCTTCGGCCGCCGGCA
CAGGCCAGGCGAGATTGGCTCACCGATACTCTGACACACCCCCACGGGCA
GAAACTGTAGAAGCTGACGCCGGTGCTGCCGTCCGTTTAAGGACATAAAA
AATCAAATAATAATGAAAAACCTACGAGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig700:5708..6886+

>mRNA_P-wetherbeei_contig700.4.1 ID=mRNA_P-wetherbeei_contig700.4.1|Name=mRNA_P-wetherbeei_contig700.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=804bp|location=Sequence derived from alignment at P-wetherbeei_contig700:5708..6886+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGTGGCGGTAGATGGCGGTGTCGGTGTCGGTGGAGGCAGCGGCGTCAG
CGGGGCGGCCGGAACCCGCTGGACGGTGGTGGATCCCGGAGACGGCTCGG
GCAAGATGCGCCTTACCATAACCACCGCGGATTACCTTTCCTTTCTCCAC
TTTCAGGCCTTTATGGCGTACTGCGGTGAACAGGGTGGTGGCGGCGGCAG
TAATGGCGGCGATGGCGGCGGCGGCGGCGAGATGGGAAGTACCGGAGCTC
TACCACCGGCACTGTTGCCTCCTCCGCCACCGGCTCTGTCCCCAGAACGA
GCCAGCGTTTGTCGTGGCTTCGGCGGCGATGACAGCGGCGGCGGCGGTTT
CGGTAATGGCGGCGGCGGTGGCTTTTTGACAGATGATGAAACCGCTCCGG
ACACGCCCCGGTCATCTGCCGGAATGCTTTCGCCCGGCCATTGGTCCGTG
GGAAACCGCCCAGTGTCCACGCCGCACGCCAGGTCGTTAGCAGGCTTTGG
CTTCGAGAAACGGCCCCTTTCGCTTCCACTGCCCCAGCGGCGTCTCAAGG
TTCCTGCTTCACCCGCCCGCGGCGGTGGCGGCGACAACGGCGGCGGCAGC
AGCAGCCGTAACGGCAGGGACGGCAGTGGCGCCAACCGCAGCCGCAACGA
CGGCCGCAACACGGGCGATGCCGGCTGGTCGCGGTCACGCTCGCCCCTGC
GGCCGGACCGAAGGCGGTCGTGTGGCGGCGGAGACCGCGACGACGGCGAC
GAGGAGGGCTCCGTGATGGACGAGGATTACCGGCCGAGGGATGCATCGGT
GTAG
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