mRNA_P-wetherbeei_contig6996.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6996.2.1
Unique NamemRNA_P-wetherbeei_contig6996.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig6996.2.1 vs. uniprot
Match: A0A6A7KKH5_9PROT (PAS domain-containing protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A6A7KKH5_9PROT)

HSP 1 Score: 116 bits (290), Expect = 3.740e-30
Identity = 62/153 (40.52%), Postives = 89/153 (58.17%), Query Frame = 1
Query:    1 PAERHWKVGALWDYWRTAYDRLGRAPRRADVDPIDIPKLLANLWIVDWE-NAARFRYRLIGTAVTRAWNRDMTGRYLDDDIPGFAATALGRELAGVVRTGRPAWSKGPPTPRPAVDPVDVLEIERLALPLAADDGSVAMVLCLSVYWPRIGDE 456
            P + H KV AL+DYWR+ + + G  P R  +DPIDIP LL N+W++D   N  RFR+RL+GT +      D TG++ D+ +P F           +V TG+P+WS+G    RP  +     E+ER+ LPLA D   V M+L L+V++   G E
Sbjct:   14 PEDCHPKVRALFDYWRSVHPKDGGLPGRQHIDPIDIPHLLPNIWLIDVRRNPYRFRFRLVGTLIVNYAGEDNTGKWFDERLPDFDPGVF----IDLVETGKPSWSRGRSKMRPEKN---YYELERVRLPLATDAKIVDMILSLTVFFDSGGSE 159          
BLAST of mRNA_P-wetherbeei_contig6996.2.1 vs. uniprot
Match: A8TQS4_9PROT (Uncharacterized protein n=1 Tax=alpha proteobacterium BAL199 TaxID=331869 RepID=A8TQS4_9PROT)

HSP 1 Score: 112 bits (280), Expect = 9.910e-29
Identity = 65/151 (43.05%), Postives = 88/151 (58.28%), Query Frame = 1
Query:   13 HWKVGALWDYWRTAYDRLGRAPRRADVDPIDIPKLLANLWIVDWENAA--RFRYRLIGTAVTRAWNRDMTGRYLDDDIPGFAATALGRELAGVVRTGRPAWSKGPPTPRPAVDPVDVLEIERLALPLAADDGSVAMVLCLSVYWPRIGDEF 459
            H KV  L DYW  +    G  P R   +P+D+P LL N+W++D E     R RYRL+GT V +A++RD TGRYLD+    F  + +   + GVV+ G P W  G  TPR      D L +ER+ LPLA+D   V M+L L+V+  R G+EF
Sbjct:   10 HPKVRTLVDYW-LSIKPAGSLPGRQHFEPLDVPALLPNIWLIDVEREPKLRLRYRLVGTNVAQAFDRDSTGRYLDEVHSEFLDSHIWLYMKGVVQDGMPGWRAG--TPR-FWHLRDYLSLERIYLPLASDGREVDMILALTVFVDRFGNEF 156          
BLAST of mRNA_P-wetherbeei_contig6996.2.1 vs. uniprot
Match: A0A6A7KQ29_9PROT (PAS domain-containing protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A6A7KQ29_9PROT)

HSP 1 Score: 107 bits (266), Expect = 1.540e-26
Identity = 58/153 (37.91%), Postives = 86/153 (56.21%), Query Frame = 1
Query:    1 PAERHWKVGALWDYWRTAYDRLGRAPRRADVDPIDIPKLLANLWIVDWE-NAARFRYRLIGTAVTRAWNRDMTGRYLDDDIPGFAATALGRELAGVVRTGRPAWSKGPPTPRPAVDPVDVLEIERLALPLAADDGSVAMVLCLSVYWPRIGDE 456
            P   H K+  +  YW + +   G  P R  +DPIDIP+LL N+W++D   +  RFR+RLIGTA+      D TG++ D+ +P F  T        VV T  P+W + P   RP  +     E+ER+ LPLA D  +V M+L L+V++ + G+E
Sbjct:   14 PENCHPKIRQIAAYWNSKHPDAGVLPGRQHLDPIDIPQLLPNVWLIDVSRDPYRFRFRLIGTAIVEYAGEDNTGKWFDETLPDFDPTVF----IDVVETQEPSWRRSPSRMRPYKE---YRELERVRLPLARDGKTVDMILSLTVFFDKEGNE 159          
BLAST of mRNA_P-wetherbeei_contig6996.2.1 vs. uniprot
Match: UPI0019A5911B (Uncharacterized protein n=2 Tax=Thalassobaculum fulvum TaxID=1633335 RepID=UPI0019A5911B)

HSP 1 Score: 104 bits (260), Expect = 2.490e-25
Identity = 59/151 (39.07%), Postives = 82/151 (54.30%), Query Frame = 1
Query:   13 HWKVGALWDYWRTAYDRLGRAPRRADVDPIDIPKLLANLWIVDWENAA--RFRYRLIGTAVTRAWNRDMTGRYLDDDIPGFAATALGRELAGVVRTGRPAWSKGPPTPRPAVDPV-DVLEIERLALPLAADDGSVAMVLCLSVYWPRIGDE 456
            H K+  L +YW +        P R   +P+D+P LL NLW+ D E A   RFRYRL+GT + RA++ D TG YLD   PG     +   L  V   G+ +W  G    RP +  + D + IER+ LPLA D  +V M+L  +++  R GDE
Sbjct:   43 HPKIRTLIEYWLSIRPAEAAVPGRVHFEPLDVPTLLPNLWLADVERAPALRFRYRLVGTHIARAFDGDPTGAYLDTLTPGSRDDRVEASLGTVATNGQASWRAG----RPRLWRLHDYVRIERIYLPLAGDGRTVDMILAATLFLDRYGDE 189          
BLAST of mRNA_P-wetherbeei_contig6996.2.1 vs. uniprot
Match: UPI001302109E (PAS domain-containing protein n=2 Tax=Kiloniella majae TaxID=1938558 RepID=UPI001302109E)

HSP 1 Score: 97.8 bits (242), Expect = 4.320e-23
Identity = 53/141 (37.59%), Postives = 81/141 (57.45%), Query Frame = 1
Query:   19 KVGALWDYWRTAYDRLGRAPRRADVDPIDIPKLLANLWIVDW-ENAARFRYRLIGTAVTRAWNRDMTGRYLDDDIPGFAATALGRELAGVVRTGRPAWSKGPPTPRPAVDPVDVLEIERLALPLAADDGSVAMVLCLSVYW 438
            K  AL++YW + +      P R  +DPIDIP LL N+W+VD  ++  RFR+RL GTA   A +RD TG ++D+  P F  + +  +   ++  G P++ KGP +        +   IER+ LPLA +   V M+L L+VY+
Sbjct:   13 KNRALYEYWLSIHPDSDTLPGRQHLDPIDIPSLLPNVWLVDVVKDPVRFRFRLFGTAHYGAMDRDCTGMWIDEAFPSFPGSEVYSDYINLIENGVPSYRKGPAS----FHIPNYKTIERIMLPLAENGTDVNMILALTVYF 149          
BLAST of mRNA_P-wetherbeei_contig6996.2.1 vs. uniprot
Match: A0A0M2R8R7_9PROT (Uncharacterized protein n=1 Tax=Kiloniella litopenaei TaxID=1549748 RepID=A0A0M2R8R7_9PROT)

HSP 1 Score: 95.5 bits (236), Expect = 3.630e-22
Identity = 52/141 (36.88%), Postives = 80/141 (56.74%), Query Frame = 1
Query:   19 KVGALWDYWRTAYDRLGRAPRRADVDPIDIPKLLANLWIVDW-ENAARFRYRLIGTAVTRAWNRDMTGRYLDDDIPGFAATALGRELAGVVRTGRPAWSKGPPTPRPAVDPVDVLEIERLALPLAADDGSVAMVLCLSVYW 438
            K  AL++YW + +      P R  +DP+DIP LL N+W+VD  ++  RFR+RL GTA   A +RD TG ++D+  P F  +   ++   +V T  P++ KG      +    +   IER+ LPLA +   V M+L L+VY+
Sbjct:   15 KNRALYEYWLSIHPDKTTLPGRQHLDPMDIPALLPNIWLVDVVQDPLRFRFRLFGTAHYAAMDRDCTGMWIDEAFPDFTRSGFDQDYINIVETKLPSYRKG----SASYHIPNYKTIERIMLPLAENGTDVDMILALTVYF 151          
BLAST of mRNA_P-wetherbeei_contig6996.2.1 vs. uniprot
Match: A0A7C7KNA1_9PROT (PAS domain-containing protein n=1 Tax=Kiloniellaceae bacterium TaxID=2480820 RepID=A0A7C7KNA1_9PROT)

HSP 1 Score: 89.7 bits (221), Expect = 9.380e-20
Identity = 52/140 (37.14%), Postives = 75/140 (53.57%), Query Frame = 1
Query:   19 KVGALWDYWRTAYDRLGRAPRRADVDPIDIPKLLANLWIVDWENAA-RFRYRLIGTAVTRAWNRDMTGRYLDDDIPGFAATALGRELAGVVRTGRPAWSKGPPTPRPAVDPVDVLEIERLALPLAADDGSVAMVLCLSVY 435
            K+ AL+DYWR+ +   G  P R   DPID+P+LL N+W+VD      RFR+RL+GTA+ +   RD TG++LD   P +  +            G PA+ K    P       DV   E L LPLA +   V ++L +++Y
Sbjct:   21 KIRALYDYWRSIHPEAG-LPGRQHFDPIDVPELLPNIWMVDVNREPMRFRFRLVGTAIVKFTERDATGQWLDAVYPDYWNSDAAAYHRACALDGTPAYRKSRAAPPGGGSEGDV---ESLTLPLAGNGSDVDILLNMTLY 156          
BLAST of mRNA_P-wetherbeei_contig6996.2.1 vs. uniprot
Match: UPI001873398B (PAS domain-containing protein n=1 Tax=Pelagibius sp. NBU2595 TaxID=2762760 RepID=UPI001873398B)

HSP 1 Score: 85.5 bits (210), Expect = 2.920e-18
Identity = 48/140 (34.29%), Postives = 76/140 (54.29%), Query Frame = 1
Query:   19 KVGALWDYWRTAYDRLGRAPRRADVDPIDIPKLLANLWIVDW-ENAARFRYRLIGTAVTRAWNRDMTGRYLDDDIPGFAATALGRELAGVVRTGRPAWSKGPPTPRPAVDPVDVLEIERLALPLAADDGSVAMVLCLSVY 435
            K+ AL+DYW+  +   G  P R   DP+DIP+LL N+W++D  ++   FR+RL+GT + +   RD TG  L +  P + +T   R      + G PA+ K      P    +   E ER+ LPLA +   V ++L +++Y
Sbjct:    9 KIKALFDYWQKIHPEAG-LPGRQHFDPMDIPQLLPNIWMIDVRQDPLCFRFRLVGTEIVKFTGRDATGLCLSEVYPQYKSTEAYRIHCNCAQVGEPAYRKSGVLSNPGRSHI---EAERIYLPLAKNGEQVDILLVMTLY 144          
BLAST of mRNA_P-wetherbeei_contig6996.2.1 vs. uniprot
Match: A0A6A7KTM9_9PROT (PAS domain-containing protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A6A7KTM9_9PROT)

HSP 1 Score: 85.5 bits (210), Expect = 6.360e-18
Identity = 52/147 (35.37%), Postives = 75/147 (51.02%), Query Frame = 1
Query:    1 PAERHWKVGALWDYWRTAYDRLGRA-PRRADVDPIDIPKLLANLWIVDWE-NAARFRYRLIGTAVTRAWNRDMTGRYLDDDIPGFAATALGRELAGVVRTGRPAWSKGPPTPRPAVDPVDVLEIERLALPLAADDGSVAMVLCLSVY 435
            PA+ +  +     YW +   + G+A P R  +DP+DIP LL N+W++D + N  RF +RL+GT V   +  D TGR LD+    F  T   ++   V     P W +G P             IER+ LPLA +   V M+ CLSV+
Sbjct:   29 PADCNATIREAVAYWLSI--KPGQALPGRQHLDPVDIPHLLPNVWLIDVKRNPLRFVFRLVGTGVVEFFGNDPTGRRLDEVFDDFEQTVAYKDFCSVAEDKEPRWRRGTPV---LFHLEKFSRIERVYLPLARNGYDVDMIFCLSVF 170          
BLAST of mRNA_P-wetherbeei_contig6996.2.1 vs. uniprot
Match: A0A0H2MZ97_9PROT (Uncharacterized protein n=2 Tax=Kiloniella TaxID=454159 RepID=A0A0H2MZ97_9PROT)

HSP 1 Score: 84.0 bits (206), Expect = 1.190e-17
Identity = 48/141 (34.04%), Postives = 75/141 (53.19%), Query Frame = 1
Query:   19 KVGALWDYWRTAYDRLGRAPRRADVDPIDIPKLLANLWIVDW-ENAARFRYRLIGTAVTRAWNRDMTGRYLDDDIPGFAATALGRELAGVVRTGRPAWSKGPPTPRPAVDPVDVLEIERLALPLAADDGSVAMVLCLSVYW 438
            K  AL++YW + +      P R  +DPIDIP LL N+W+VD  ++  RFR+RL  TA   A +RD TG ++D+    F  + +  +   ++    P +  GP +        +   IER+ LPLA +   V M+  L+VY+
Sbjct:   17 KNRALYEYWLSIHPDKDTLPGRQHLDPIDIPSLLPNVWLVDVVKDPVRFRFRLFCTAHYGAMDRDCTGMWIDEAFSSFLESEVYDDYINLIENKMPIYRNGPAS----FHIPNYKTIERIMLPLAENGTDVNMIFALTVYF 153          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6996.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6A7KKH5_9PROT3.740e-3040.52PAS domain-containing protein n=1 Tax=Alphaproteob... [more]
A8TQS4_9PROT9.910e-2943.05Uncharacterized protein n=1 Tax=alpha proteobacter... [more]
A0A6A7KQ29_9PROT1.540e-2637.91PAS domain-containing protein n=1 Tax=Alphaproteob... [more]
UPI0019A5911B2.490e-2539.07Uncharacterized protein n=2 Tax=Thalassobaculum fu... [more]
UPI001302109E4.320e-2337.59PAS domain-containing protein n=2 Tax=Kiloniella m... [more]
A0A0M2R8R7_9PROT3.630e-2236.88Uncharacterized protein n=1 Tax=Kiloniella litopen... [more]
A0A7C7KNA1_9PROT9.380e-2037.14PAS domain-containing protein n=1 Tax=Kiloniellace... [more]
UPI001873398B2.920e-1834.29PAS domain-containing protein n=1 Tax=Pelagibius s... [more]
A0A6A7KTM9_9PROT6.360e-1835.37PAS domain-containing protein n=1 Tax=Alphaproteob... [more]
A0A0H2MZ97_9PROT1.190e-1734.04Uncharacterized protein n=2 Tax=Kiloniella TaxID=4... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6996contigP-wetherbeei_contig6996:2456..2917 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog331869.BAL199_04444
PFAMsPAS_5
Model size462
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.62e-29
EggNOG OGsCOG5388@1|root,COG5388@2|Bacteria,1NC94@1224|Proteobacteria,2UFSI@28211|Alphaproteobacteria
DescriptionPAS domain
Cds size462
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186950.6315455-CDS-P-wetherbeei_contig6996:2455..29171683186950.6315455-CDS-P-wetherbeei_contig6996:2455..2917Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6996 2456..2917 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6996.2.1prot_P-wetherbeei_contig6996.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6996 2456..2917 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6996.2.1

>prot_P-wetherbeei_contig6996.2.1 ID=prot_P-wetherbeei_contig6996.2.1|Name=mRNA_P-wetherbeei_contig6996.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=154bp
PAERHWKVGALWDYWRTAYDRLGRAPRRADVDPIDIPKLLANLWIVDWEN
AARFRYRLIGTAVTRAWNRDMTGRYLDDDIPGFAATALGRELAGVVRTGR
PAWSKGPPTPRPAVDPVDVLEIERLALPLAADDGSVAMVLCLSVYWPRIG
DEF*
back to top

mRNA from alignment at P-wetherbeei_contig6996:2456..2917-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6996.2.1 ID=mRNA_P-wetherbeei_contig6996.2.1|Name=mRNA_P-wetherbeei_contig6996.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=462bp|location=Sequence derived from alignment at P-wetherbeei_contig6996:2456..2917- (Phaeothamnion wetherbeei SAG_119_79)
CCGGCCGAGCGCCACTGGAAGGTCGGCGCGTTGTGGGATTATTGGCGAAC GGCCTATGACCGCCTCGGCCGGGCGCCGCGGCGCGCCGACGTCGATCCGA TCGACATCCCGAAGCTGCTGGCCAATCTGTGGATCGTCGATTGGGAAAAC GCGGCGCGCTTCCGCTACCGGCTGATCGGCACGGCGGTGACGCGCGCCTG GAACCGCGACATGACCGGGCGCTATCTCGACGACGACATTCCCGGTTTCG CCGCCACGGCGCTGGGCCGCGAACTCGCCGGGGTCGTGCGGACGGGCCGG CCGGCGTGGAGCAAGGGCCCGCCGACGCCGCGCCCGGCGGTCGATCCGGT CGATGTCCTCGAGATCGAACGGCTGGCGCTGCCGCTCGCCGCCGACGACG GATCGGTCGCGATGGTGCTGTGCCTGTCGGTCTACTGGCCGCGGATCGGC GACGAATTCTGA
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig6996:2456..2917-

>mRNA_P-wetherbeei_contig6996.2.1 ID=mRNA_P-wetherbeei_contig6996.2.1|Name=mRNA_P-wetherbeei_contig6996.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=462bp|location=Sequence derived from alignment at P-wetherbeei_contig6996:2456..2917- (Phaeothamnion wetherbeei SAG_119_79)
CCGGCCGAGCGCCACTGGAAGGTCGGCGCGTTGTGGGATTATTGGCGAAC
GGCCTATGACCGCCTCGGCCGGGCGCCGCGGCGCGCCGACGTCGATCCGA
TCGACATCCCGAAGCTGCTGGCCAATCTGTGGATCGTCGATTGGGAAAAC
GCGGCGCGCTTCCGCTACCGGCTGATCGGCACGGCGGTGACGCGCGCCTG
GAACCGCGACATGACCGGGCGCTATCTCGACGACGACATTCCCGGTTTCG
CCGCCACGGCGCTGGGCCGCGAACTCGCCGGGGTCGTGCGGACGGGCCGG
CCGGCGTGGAGCAAGGGCCCGCCGACGCCGCGCCCGGCGGTCGATCCGGT
CGATGTCCTCGAGATCGAACGGCTGGCGCTGCCGCTCGCCGCCGACGACG
GATCGGTCGCGATGGTGCTGTGCCTGTCGGTCTACTGGCCGCGGATCGGC
GACGAATTCTGA
back to top