mRNA_P-wetherbeei_contig6993.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6993.2.1
Unique NamemRNA_P-wetherbeei_contig6993.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig6993.2.1 vs. uniprot
Match: A0A7X8XNP4_9BURK (DNA repair protein RecN n=1 Tax=Burkholderiales bacterium TaxID=1891238 RepID=A0A7X8XNP4_9BURK)

HSP 1 Score: 155 bits (392), Expect = 3.230e-41
Identity = 91/181 (50.28%), Postives = 120/181 (66.30%), Query Frame = 1
Query:    1 PNMLLELEIENFALVERLHVPFGGGLNVLTGETGAGKSILLDAIDYLLGGAHPNMRP--NAAQVSRVSGHF-QTTERSLAWLEEQGY-GTCEELLLSRECSVQGRSSARINGRLATSAQIRELGENLVEIHGQHQSTQLLRPSMHLKFLDIFCGPAQARRLEDYRSVYARLREVEKQLTAL 531
            P ML ELEI NFALVER  +PF   LN+L+GETG+GKS++++A+ +LLGG  P  +P  + A+   VSG F    E +LA + + G   T +ELLLSR+    GRS+ RIN RL T A +RELG  LV++HGQHQ   LL+PS HL+ LD F GPAQA  L  + + + R RE+  +L AL
Sbjct:   22 PAMLAELEIINFALVERACLPFTESLNILSGETGSGKSLVVEALGFLLGGT-PRDKPLRSGAERGSVSGRFLDPPEEALALVRQWGLEDTDDELLLSRDLHASGRSTCRINSRLTTLANLRELGSTLVDLHGQHQQYALLKPSRHLQILDRFAGPAQAGLLSRHAATWKRSRELSAELEAL 201          
BLAST of mRNA_P-wetherbeei_contig6993.2.1 vs. uniprot
Match: A0A1E4FBE1_9BACT (DNA repair protein RecN n=1 Tax=bacterium SCN 62-11 TaxID=1660156 RepID=A0A1E4FBE1_9BACT)

HSP 1 Score: 152 bits (385), Expect = 2.050e-40
Identity = 87/182 (47.80%), Postives = 116/182 (63.74%), Query Frame = 1
Query:    7 MLLELEIENFALVERLHVPFGGGLNVLTGETGAGKSILLDAIDYLLGGAHPNMRPNAAQVSRVSGHFQTTERSLAWLEEQGYGTCEELLLSRECSVQGRSSARINGRLATSAQIRELGENLVEIHGQHQSTQLLRPSMHLKFLDIFCGPAQARRLEDYRSVYARLREVEKQLTALNEQSRTR 552
            ML++LEIENFAL++ + + F  GLNVLTGETGAGKSI+LDA+ +LLG      R N  + +RV+G F  ++ +  WL EQG+   +E +  RE S  GRS  R+NG L + AQ+RELG  ++EIH QHQS +LLRPS HL+ LD          LE YR +Y   +E  +QL  L +  R R
Sbjct:    1 MLVQLEIENFALIDSVQLEFREGLNVLTGETGAGKSIVLDALGFLLGDP---ARDNLQKRARVTGRFMLSQEAKRWLVEQGWDEDDEAIALREVSPGGRSLCRLNGSLCSLAQLRELGNLMLEIHSQHQSNRLLRPSRHLELLDRLSDHQPL--LEAYRDLYRESQESARQLRELGQSERER 177          
BLAST of mRNA_P-wetherbeei_contig6993.2.1 vs. uniprot
Match: UPI00164BC436 (DNA repair protein RecN n=1 Tax=Anaerofilum sp. BX8 TaxID=2763016 RepID=UPI00164BC436)

HSP 1 Score: 147 bits (370), Expect = 3.430e-38
Identity = 88/179 (49.16%), Postives = 114/179 (63.69%), Query Frame = 1
Query:    7 MLLELEIENFALVERLHVPFGGGLNVLTGETGAGKSILLDAIDYLLGG--AHPNMRPNAAQVSRVSGHFQTTERSLAWLEEQGYGTCEELLLSRECSVQGRSSARINGRLATSAQIRELGENLVEIHGQHQSTQLLRPSMHLKFLDIFCGPAQARRL-EDYRSVYARLREVEKQLTALN 534
            ML EL IEN A++E+  V FG GLNVLTGETGAGKSIL+D+I+ +LG   +   +R    + +  +   Q    + A LE  GY   EELLL RE    G++S R+NGR AT+A +RE+G +L+ IHGQH +  LL PS HL  LD   G AQ   L E+YR  Y  LRE+EKQ+ AL+
Sbjct:    1 MLNELSIENVAVIEKAEVRFGAGLNVLTGETGAGKSILIDSINAILGNRTSRELVRSGTPKAAVWATFTQLPAEAQAALEAAGYEADEELLLYREIGADGKTSCRVNGRPATAAILREIGASLLTIHGQHDNQSLLNPSKHLGILD---GYAQNEELLEEYRHAYRALREIEKQIAALS 176          
BLAST of mRNA_P-wetherbeei_contig6993.2.1 vs. uniprot
Match: UPI001931AA4F (DNA repair protein RecN n=1 Tax=Alkalihalobacillus gibsonii TaxID=79881 RepID=UPI001931AA4F)

HSP 1 Score: 143 bits (361), Expect = 7.400e-37
Identity = 77/180 (42.78%), Postives = 114/180 (63.33%), Query Frame = 1
Query:    7 MLLELEIENFALVERLHVPFGGGLNVLTGETGAGKSILLDAIDYLLGG-AHPNMRPNAAQVSRVSGHFQTTERSLAWLE--EQGYGTCEELLLSRECSVQGRSSARINGRLATSAQIRELGENLVEIHGQHQSTQLLRPSMHLKFLDIFCGPAQARRLEDYRSVYARLREVEKQLTALNE 537
            ML+EL + +FA++E L +PF  GL VLTGETGAGKSI++DAI  LLGG        +    + + G F    +  A L+  E G    EEL+L RE + QG+S  RING+L T   +RE+G++LV++HGQH+   L++P  HL+FLD +         ++YR +Y R +++ KQ++AL+E
Sbjct:    1 MLIELSVRHFAIIEELTIPFESGLTVLTGETGAGKSIIIDAIGLLLGGRGSAEFVRHGETRAEIEGLFAVDAKHQAVLKAVELGIEANEELILRREITSQGKSICRINGKLVTLGILREIGQSLVDVHGQHEHQSLMQPDKHLRFLDQYATNKLKSTFQEYRELYERAQKINKQISALSE 180          
BLAST of mRNA_P-wetherbeei_contig6993.2.1 vs. uniprot
Match: A0A1Y4TMH6_9FIRM (DNA repair protein RecN n=2 Tax=Gemmiger TaxID=204475 RepID=A0A1Y4TMH6_9FIRM)

HSP 1 Score: 140 bits (352), Expect = 1.230e-35
Identity = 83/177 (46.89%), Postives = 114/177 (64.41%), Query Frame = 1
Query:    7 MLLELEIENFALVERLHVPFGGGLNVLTGETGAGKSILLDAIDYLLGG--AHPNMRPNAAQVSRVSGHFQTTERSLAWLEEQGYGTCEELLLSRECSVQGRSSARINGRLATSAQIRELGENLVEIHGQHQSTQLLRPSMHLKFLDIFCGPAQARRLEDYRSVYARLREVEKQLTAL 531
            ML  L+IEN A++E+    F  GLNVLTGETGAGKSIL+D+I+ +LG   +   +R  AA+    +     + R+ A LEE GY   +ELLL RE S +G+   RING  AT+A +RE+G +L+ IHGQH S  L  P+ HL  LD F    QA+ LE+Y+++Y RL  V++Q+ AL
Sbjct:    1 MLSSLKIENVAVIEKAQAQFTAGLNVLTGETGAGKSILIDSINAILGNRTSRDLVRTGAAKACIWATFTDLSPRTRALLEEAGYEAEDELLLYREISAEGKGGCRINGMPATAAVLREIGGSLINIHGQHDSQSLTNPARHLALLDTFAQD-QAQ-LEEYQTLYRRLIRVKRQMDAL 175          
BLAST of mRNA_P-wetherbeei_contig6993.2.1 vs. uniprot
Match: A0A7C3SBX4_9BACT (DNA repair protein RecN n=1 Tax=Armatimonadetes bacterium TaxID=2033014 RepID=A0A7C3SBX4_9BACT)

HSP 1 Score: 140 bits (352), Expect = 1.440e-35
Identity = 83/186 (44.62%), Postives = 117/186 (62.90%), Query Frame = 1
Query:    7 MLLELEIENFALVERLHVPFGGGLNVLTGETGAGKSILLDAIDYLLGGAHP-NMRPNAAQVSRVSGHFQTTE--RSLAWLEEQGYGTCEELL-LSRECSVQGRSSARINGRLATSAQIRELGENLVEIHGQHQSTQLLRPSMHLKFLDIFCGPAQARRLEDYRSVYARLREVEKQLTALNEQSRTR 552
            ML EL I N A+++ + VPF  G NVLTGETGAGKSI++ AI++L+GG    ++    A+   V G F  T   +  A LEE G  T +++L LSRE S  G+S  RINGR AT A ++++G++L++IHGQH+   LL P+ HL+FLD F G       E Y S+Y +L +VE+++  L    R R
Sbjct:    1 MLTELLIRNLAIIDEVQVPFQPGFNVLTGETGAGKSIIIHAINFLVGGKGDIDLIRAEAETMLVEGVFDLTNCPQVKAVLEEVGIETEDDMLILSRELSRAGKSRCRINGRAATVAMLKQIGKSLIDIHGQHEHQSLLDPANHLRFLDAFGGEGLMALKERYNSLYRQLMQVEREIAELQRSERER 186          
BLAST of mRNA_P-wetherbeei_contig6993.2.1 vs. uniprot
Match: UPI001C11EC4B (DNA repair protein RecN n=1 Tax=Acetivibrio sp. MSJd-27 TaxID=2841523 RepID=UPI001C11EC4B)

HSP 1 Score: 139 bits (350), Expect = 2.500e-35
Identity = 75/176 (42.61%), Postives = 112/176 (63.64%), Query Frame = 1
Query:    7 MLLELEIENFALVERLHVPFGGGLNVLTGETGAGKSILLDAIDYLLGG-AHPNMRPNAAQVSRVSGHFQTTERSLAWLEEQGYGTCEE--LLLSRECSVQGRSSARINGRLATSAQIRELGENLVEIHGQHQSTQLLRPSMHLKFLDIFCGPAQARRLEDYRSVYARLREVEKQLT 525
            ML+ L I   A+++ + + F  GLN+LTGETGAGKSI++DA++ +LG     N+     + + VS  F   E+   +L E G+  CEE  L+L RE ++ G+S+ RING+LAT++ +RE+ ++LV IHGQH +  L+ P  HL  LD FC     + L DYR  Y R R++EK+L+
Sbjct:    1 MLVSLTIHQIAVIQSVQIEFDKGLNILTGETGAGKSIIIDALNMILGNRVSKNLIRTGEESASVSAIFMVQEKVQDYLSENGF-PCEEGELMLYREINISGKSTIRINGKLATASILREIADSLVNIHGQHDNQSLMNPEKHLHILDEFCN--NEKELYDYRQAYHRYRQIEKELS 173          
BLAST of mRNA_P-wetherbeei_contig6993.2.1 vs. uniprot
Match: UPI0019457683 (AAA family ATPase n=1 Tax=Thermobrachium celere TaxID=53422 RepID=UPI0019457683)

HSP 1 Score: 134 bits (336), Expect = 2.580e-35
Identity = 70/184 (38.04%), Postives = 116/184 (63.04%), Query Frame = 1
Query:    7 MLLELEIENFALVERLHVPFGGGLNVLTGETGAGKSILLDAIDYLLGGA-HPNMRPNAAQVSRVSGHFQT-TERSLAWLEEQGYGTCEELLLSRECSVQGRSSARINGRLATSAQIRELGENLVEIHGQHQSTQLLRPSMHLKFLDIFCGPAQARRLEDYRSVYARLREVEKQLTALNEQSRTR 552
            MLL+L I+NFAL+E L + F  G NVLTGETGAGKSIL+D++ +L+G   +  +    +  + V G F+   E+ +++L+E G    + L+L+RE +   +S +R+NGR  + + IRE+ + L++IHGQH+   LL  + H++ LD FCG       ++Y+  Y +++ +EK +  LN+  + R
Sbjct:    1 MLLKLRIKNFALIEELELDFSNGFNVLTGETGAGKSILIDSVSFLVGEKFNKEIIRTGSDFAFVEGIFEIKNEKIISYLKENGIEVDDYLILAREINQSNKSISRVNGRTTSVSFIREISKYLIDIHGQHEHQSLLDDAKHIEILDSFCGEKLKSLKDNYKDKYEKIKSIEKDIERLNQDEQYR 184          
BLAST of mRNA_P-wetherbeei_contig6993.2.1 vs. uniprot
Match: A0A553ZV70_9BACI (DNA repair protein RecN n=1 Tax=Bacillus sp. P16(2019) TaxID=2597270 RepID=A0A553ZV70_9BACI)

HSP 1 Score: 138 bits (348), Expect = 5.050e-35
Identity = 76/184 (41.30%), Postives = 113/184 (61.41%), Query Frame = 1
Query:    7 MLLELEIENFALVERLHVPFGGGLNVLTGETGAGKSILLDAIDYLLGGA-------HPNMRPNAAQVSRVSGHFQTTERSLAWLEEQGYGTCEELLLSRECSVQGRSSARINGRLATSAQIRELGENLVEIHGQHQSTQLLRPSMHLKFLDIFCGPAQARRLEDYRSVYARLREVEKQLTALNE 537
            ML+EL I++FA+++ L VPF  GL VLTGETGAGKSI++DAI  LLGG        H   R     +  V  + Q  ++++    E G    EE++L RE + QG+S  RING+L T   +RE+G++LV++HGQH+   L++P  HL FLD F     +  L +Y+ ++ + + + KQ+  LNE
Sbjct:    1 MLIELSIKHFAIIDELTVPFERGLTVLTGETGAGKSIIIDAIGLLLGGRGSAEFVRHGESRAEIEGLFAVDENHQAVQKAI----ELGIQADEEMILRREITQQGKSVCRINGKLVTLGILREIGQSLVDVHGQHEHQTLMQPDKHLMFLDQFASKEISSTLTEYQELFEQAQTINKQIQDLNE 180          
BLAST of mRNA_P-wetherbeei_contig6993.2.1 vs. uniprot
Match: A0A7V9HDT5_9ACTN (DNA repair protein RecN n=1 Tax=Solirubrobacterales bacterium TaxID=1909295 RepID=A0A7V9HDT5_9ACTN)

HSP 1 Score: 138 bits (347), Expect = 6.210e-35
Identity = 79/184 (42.93%), Postives = 114/184 (61.96%), Query Frame = 1
Query:    7 MLLELEIENFALVERLHVPFGGGLNVLTGETGAGKSILLDAIDYLLGGAHPN--MRPNAAQVSRVSGHFQTTERSLAWLEEQGYGTCEELLLSRECSVQGRSSARINGRLATSAQIRELGENLVEIHGQHQSTQLLRPSMHLKFLDIFCGPAQARRLEDYRSVYARLREVEKQLTALNEQSRTR 552
            ML EL +EN  L+ER  +  G GLNVLTGETGAGK++L  A+D LLGG   +  +RP A++   V G F  ++     L E+    CEE++L+R  S +GR+ A + GR AT+A +R++G  LV  +GQH+  +L   +  L+ LD FCGP QA R   + + Y R R +E++L AL  ++ TR
Sbjct:    1 MLCELRVENLLLIERAELRLGEGLNVLTGETGAGKTVLAHALDLLLGGKPRSGIVRPGASEAY-VEGVFSLSDEMRDELAERLPSDCEEIVLARRVSAEGRTRAYLGGRSATAADLRDIGGRLVSFYGQHEHRKLTLAAAQLEILDGFCGPDQAARRARFAAAYGRQRALERELEALMARAGTR 183          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6993.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7X8XNP4_9BURK3.230e-4150.28DNA repair protein RecN n=1 Tax=Burkholderiales ba... [more]
A0A1E4FBE1_9BACT2.050e-4047.80DNA repair protein RecN n=1 Tax=bacterium SCN 62-1... [more]
UPI00164BC4363.430e-3849.16DNA repair protein RecN n=1 Tax=Anaerofilum sp. BX... [more]
UPI001931AA4F7.400e-3742.78DNA repair protein RecN n=1 Tax=Alkalihalobacillus... [more]
A0A1Y4TMH6_9FIRM1.230e-3546.89DNA repair protein RecN n=2 Tax=Gemmiger TaxID=204... [more]
A0A7C3SBX4_9BACT1.440e-3544.62DNA repair protein RecN n=1 Tax=Armatimonadetes ba... [more]
UPI001C11EC4B2.500e-3542.61DNA repair protein RecN n=1 Tax=Acetivibrio sp. MS... [more]
UPI00194576832.580e-3538.04AAA family ATPase n=1 Tax=Thermobrachium celere Ta... [more]
A0A553ZV70_9BACI5.050e-3541.30DNA repair protein RecN n=1 Tax=Bacillus sp. P16(2... [more]
A0A7V9HDT5_9ACTN6.210e-3542.93DNA repair protein RecN n=1 Tax=Solirubrobacterale... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6993contigP-wetherbeei_contig6993:2679..3230 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1283299.AUKG01000002_gene5314
PFAMsSMC_N
Model size552
Max annot lvl84995|Rubrobacteria
KEGG koko:K03631
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.74e-34
EggNOG OGsCOG0497@1|root,COG0497@2|Bacteria,2GIVG@201174|Actinobacteria,4CPSV@84995|Rubrobacteria
DescriptionMay be involved in recombinational repair of damaged DNA
Cds size546
COG categoryL
BRITEko00000,ko03400
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186950.5670316-UTR-P-wetherbeei_contig6993:2678..26841683186950.5670316-UTR-P-wetherbeei_contig6993:2678..2684Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6993 2679..2684 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186950.5780365-CDS-P-wetherbeei_contig6993:2684..32301683186950.5780365-CDS-P-wetherbeei_contig6993:2684..3230Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6993 2685..3230 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6993.2.1prot_P-wetherbeei_contig6993.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6993 2685..3230 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6993.2.1

>prot_P-wetherbeei_contig6993.2.1 ID=prot_P-wetherbeei_contig6993.2.1|Name=mRNA_P-wetherbeei_contig6993.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=182bp
MLLELEIENFALVERLHVPFGGGLNVLTGETGAGKSILLDAIDYLLGGAH
PNMRPNAAQVSRVSGHFQTTERSLAWLEEQGYGTCEELLLSRECSVQGRS
SARINGRLATSAQIRELGENLVEIHGQHQSTQLLRPSMHLKFLDIFCGPA
QARRLEDYRSVYARLREVEKQLTALNEQSRTR
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mRNA from alignment at P-wetherbeei_contig6993:2679..3230+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6993.2.1 ID=mRNA_P-wetherbeei_contig6993.2.1|Name=mRNA_P-wetherbeei_contig6993.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=552bp|location=Sequence derived from alignment at P-wetherbeei_contig6993:2679..3230+ (Phaeothamnion wetherbeei SAG_119_79)
CCCAATATGCTCTTAGAACTCGAAATCGAAAACTTCGCCCTGGTGGAGCG TCTCCACGTTCCTTTTGGGGGCGGCCTCAATGTGCTCACCGGTGAAACCG GCGCGGGCAAGTCCATCTTGCTCGACGCTATCGACTACCTGCTCGGCGGG GCTCATCCCAACATGCGTCCCAATGCGGCTCAGGTATCCCGAGTTTCGGG TCACTTCCAGACCACCGAACGCTCGCTGGCCTGGCTCGAGGAGCAAGGTT ACGGCACCTGCGAGGAGCTGCTCCTGAGCCGCGAATGCTCGGTGCAAGGA CGTTCCAGTGCCCGCATCAACGGGCGCCTGGCGACCAGCGCGCAGATTCG CGAACTGGGTGAAAATCTCGTGGAGATTCACGGCCAGCATCAGTCCACGC AGCTGCTTCGTCCCAGCATGCATCTCAAATTCCTCGATATCTTTTGTGGC CCCGCCCAGGCCCGGCGGCTCGAAGACTACCGTAGCGTCTACGCACGGCT TCGCGAGGTCGAGAAGCAGCTTACGGCTCTGAATGAGCAGTCCCGCACCC GT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6993:2679..3230+

>mRNA_P-wetherbeei_contig6993.2.1 ID=mRNA_P-wetherbeei_contig6993.2.1|Name=mRNA_P-wetherbeei_contig6993.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=546bp|location=Sequence derived from alignment at P-wetherbeei_contig6993:2679..3230+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCTCTTAGAACTCGAAATCGAAAACTTCGCCCTGGTGGAGCGTCTCCA
CGTTCCTTTTGGGGGCGGCCTCAATGTGCTCACCGGTGAAACCGGCGCGG
GCAAGTCCATCTTGCTCGACGCTATCGACTACCTGCTCGGCGGGGCTCAT
CCCAACATGCGTCCCAATGCGGCTCAGGTATCCCGAGTTTCGGGTCACTT
CCAGACCACCGAACGCTCGCTGGCCTGGCTCGAGGAGCAAGGTTACGGCA
CCTGCGAGGAGCTGCTCCTGAGCCGCGAATGCTCGGTGCAAGGACGTTCC
AGTGCCCGCATCAACGGGCGCCTGGCGACCAGCGCGCAGATTCGCGAACT
GGGTGAAAATCTCGTGGAGATTCACGGCCAGCATCAGTCCACGCAGCTGC
TTCGTCCCAGCATGCATCTCAAATTCCTCGATATCTTTTGTGGCCCCGCC
CAGGCCCGGCGGCTCGAAGACTACCGTAGCGTCTACGCACGGCTTCGCGA
GGTCGAGAAGCAGCTTACGGCTCTGAATGAGCAGTCCCGCACCCGT
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