mRNA_P-wetherbeei_contig6986.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6986.3.1
Unique NamemRNA_P-wetherbeei_contig6986.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig6986.3.1 vs. uniprot
Match: A0A8B6DQX2_MYTGA (ATP-dependent DNA helicase n=1 Tax=Mytilus galloprovincialis TaxID=29158 RepID=A0A8B6DQX2_MYTGA)

HSP 1 Score: 163 bits (412), Expect = 1.020e-47
Identity = 88/182 (48.35%), Postives = 119/182 (65.38%), Query Frame = 1
Query:    1 TYNSADTVFDDADARPFPVELLNSLTPPGMPPHRLRLKLGTPVILLRNLNASGGQADGTRVIVSVTHRTFVECDITTGTDAGRRVYVPRIRVTAADSDLPFTLRRRQLPLNVACSLTINKAQGQTLAAVDLYLHTQVFTHGQAYVAFSRVSEPAALTVALPNHYRAPEGNYF-DNIVYEDIL 543
            TY SADTV D++    +P E LN++TP G PPH+L LK   P++LLRNLN + G  +GTR+ V       +E  I TGT AG  V++PRI +  +D+ LPF L+RRQ P+  A S+TINKAQGQTL  + L L   VF+HGQ Y AFSRV +  ++++ LP      +G Y+ DNIVYE ++
Sbjct:   13 TYLSADTVEDESTGYLYPTEFLNTITPSGTPPHKLTLKKHAPIMLLRNLNTAAGLLNGTRLSVLNLGTRLIETKILTGTHAGDTVFLPRITIIPSDAGLPFNLKRRQFPIRPAFSITINKAQGQTLGQIGLDLTKPVFSHGQLYAAFSRVRDFKSISI-LPAADSLFDGQYYTDNIVYEGVI 193          
BLAST of mRNA_P-wetherbeei_contig6986.3.1 vs. uniprot
Match: UPI001D014C45 (ATP-dependent DNA helicase PIF1-like n=1 Tax=Triticum aestivum TaxID=4565 RepID=UPI001D014C45)

HSP 1 Score: 164 bits (414), Expect = 7.630e-47
Identity = 90/187 (48.13%), Postives = 123/187 (65.78%), Query Frame = 1
Query:    1 TYNSADTVF------DDADARPFPVELLNSLTPPGMPPHRLRLKLGTPVILLRNLNASGGQADGTRVIVSVTHRTFVECDITTGTDAGRRVYVPRIRVTAADSDLPFTLRRRQLPLNVACSLTINKAQGQTLAAVDLYLHTQVFTHGQAYVAFSRVSEPAALTVALPNHYRAPEGNYFDNIVYEDIL 543
            TY S+DTV       +D D   +P E LNSL  PG+P H +RLK+G PV+LLRN+N S G  +GTR+ ++   + F+E  I TGT+ G +VY+PRI ++ +DS  PF L+RRQ P++V  ++TINK+QGQ+L  V LYL  QVF HGQ YVA SRV+    L V + +   + E N   NIVY++IL
Sbjct:  106 TYRSSDTVCKAMSNSEDGDHL-YPTEFLNSLKCPGIPDHEIRLKVGLPVMLLRNINQSEGLCNGTRLTITQLGKWFIEAQIITGTNIGNKVYIPRIIMSPSDSKWPFVLKRRQYPISVCFAMTINKSQGQSLKHVGLYLPKQVFIHGQLYVAVSRVTSRDGLKVLISDE-ESKENNSAKNIVYKEIL 290          
BLAST of mRNA_P-wetherbeei_contig6986.3.1 vs. uniprot
Match: A0A2I0AB67_9ASPA (ATP-dependent DNA helicase n=1 Tax=Apostasia shenzhenica TaxID=1088818 RepID=A0A2I0AB67_9ASPA)

HSP 1 Score: 161 bits (407), Expect = 6.400e-46
Identity = 81/165 (49.09%), Postives = 116/165 (70.30%), Query Frame = 1
Query:   49 FPVELLNSLTPPGMPPHRLRLKLGTPVILLRNLNASGGQADGTRVIVSVTHRTFVECDITTGTDAGRRVYVPRIRVTAADSDLPFTLRRRQLPLNVACSLTINKAQGQTLAAVDLYLHTQVFTHGQAYVAFSRVSEPAALTVALPNHYRAPEGNYFDNIVYEDIL 543
            +  E LNSLT PG+P H+L LK+ TP++LL+NL+ + G  +GTR+IV+      +E +I TGT+ G +V +PRI +T++ SDLPF ++RRQ P+ VA ++TINK+QGQTL  + L L T +F+HGQ YVA SR S   +L V L N++  P G +  NIVY+D+L
Sbjct:   81 YTTEFLNSLTLPGLPTHKLELKVNTPIMLLKNLDQTNGLCNGTRLIVTRIGDRVIEAEIITGTNIGEKVIIPRIILTSSKSDLPFIIKRRQYPIKVAYAMTINKSQGQTLQHIGLCLQTPIFSHGQLYVALSRASSVHSLKVLLSNNHDIPYG-FTRNIVYKDVL 244          
BLAST of mRNA_P-wetherbeei_contig6986.3.1 vs. uniprot
Match: A0A8I7B9Y8_HORVV (ATP-dependent DNA helicase n=1 Tax=Hordeum vulgare subsp. vulgare TaxID=112509 RepID=A0A8I7B9Y8_HORVV)

HSP 1 Score: 160 bits (406), Expect = 8.180e-45
Identity = 80/165 (48.48%), Postives = 113/165 (68.48%), Query Frame = 1
Query:   49 FPVELLNSLTPPGMPPHRLRLKLGTPVILLRNLNASGGQADGTRVIVSVTHRTFVECDITTGTDAGRRVYVPRIRVTAADSDLPFTLRRRQLPLNVACSLTINKAQGQTLAAVDLYLHTQVFTHGQAYVAFSRVSEPAALTVALPNHYRAPEGNYFDNIVYEDIL 543
            +P E LNSLT  G+P H LRLK+G P++L+RN+N S G  +GTR+ ++   + F+E  +  GT+ G ++Y+PRI ++ +DS  PF L+RRQ P++V  ++TINK+QGQ+L  V LYL  QVFTHGQ YVA SRV+    L + + +  R P  N   NIVY+DIL
Sbjct:  205 YPTEFLNSLTFSGIPDHELRLKVGLPIMLMRNINQSAGLCNGTRLTITQLGKRFIEGRVIQGTNVGDKIYIPRIIMSPSDSKWPFILKRRQYPISVCFAMTINKSQGQSLEKVGLYLQRQVFTHGQLYVAMSRVTNRNGLKILISDEER-PSDNVAKNIVYKDIL 368          
BLAST of mRNA_P-wetherbeei_contig6986.3.1 vs. uniprot
Match: K3YXY4_SETIT (ATP-dependent DNA helicase n=2 Tax=Setaria italica TaxID=4555 RepID=K3YXY4_SETIT)

HSP 1 Score: 166 bits (420), Expect = 9.270e-45
Identity = 87/186 (46.77%), Postives = 125/186 (67.20%), Query Frame = 1
Query:    1 TYNSADTVFD-----DADARPFPVELLNSLTPPGMPPHRLRLKLGTPVILLRNLNASGGQADGTRVIVSVTHRTFVECDITTGTDAGRRVYVPRIRVTAADSDLPFTLRRRQLPLNVACSLTINKAQGQTLAAVDLYLHTQVFTHGQAYVAFSRVSEPAALTVALPNHYRAPEGNYFDNIVYEDIL 543
            TY S+DTV       +++ + +P E LNSL  PG+P H+L+LK+G P++LLRN+N S G  +GTR+ ++   + F+E  I TGT+ G +VY+PRI ++  +S  PF L+RRQ P+ V  ++TINK+QGQ+L  V LYL  QVFTHGQ YVA SRV+    L + + +   +PE N   NIVY++IL
Sbjct:  493 TYLSSDTVCKAISTKESEDQLYPTEFLNSLKFPGIPNHKLQLKVGLPIMLLRNINQSAGLCNGTRLTITQLGKWFIEAQIITGTNIGNKVYIPRIIMSPTESKWPFVLKRRQYPITVCFAMTINKSQGQSLKNVGLYLPKQVFTHGQLYVAVSRVTSREGLKILISDE-ESPEDNMAKNIVYKEIL 677          
BLAST of mRNA_P-wetherbeei_contig6986.3.1 vs. uniprot
Match: UPI0019D685D3 (ATP-dependent DNA helicase PIF1-like n=1 Tax=Panicum virgatum TaxID=38727 RepID=UPI0019D685D3)

HSP 1 Score: 160 bits (405), Expect = 1.410e-44
Identity = 89/186 (47.85%), Postives = 119/186 (63.98%), Query Frame = 1
Query:    4 YNSADTVFDDADARP-----FPVELLNSLTPPGMPPHRLRLKLGTPVILLRNLNASGGQADGTRVIVSVTHRTFVECDITTGTDAGRRVYVPRIRVTAADSDLPFTLRRRQLPLNVACSLTINKAQGQTLAAVDLYLHTQVFTHGQAYVAFSRVSEPAALTVALPNHYRAPEGNYFDNIVYEDILR 546
            Y SAD++   +DA       +PVE LN+L     PPH+LRLK+G P++LLRNLN S G  +GTR+IV+      +E +I  GT  G + Y+PRI +T   S  PFTL RRQ P+ V  S+TINK+QGQTL+ V +YL  QVFTHGQ YVA SRV+    L + + N   +  G+   NIVY++IL+
Sbjct:  191 YLSADSISKCSDAVNDANILYPVEYLNTLNANNYPPHKLRLKVGVPIMLLRNLNQSLGLCNGTRLIVTSLGDNVIEAEIIIGTHTGEKTYIPRINLTTKASHWPFTLNRRQFPIKVCYSMTINKSQGQTLSNVGVYLKKQVFTHGQLYVALSRVTSKKGLKILIENDDGSC-GSKTQNIVYKEILQ 375          
BLAST of mRNA_P-wetherbeei_contig6986.3.1 vs. uniprot
Match: K3YD59_SETIT (ATP-dependent DNA helicase n=2 Tax=Setaria italica TaxID=4555 RepID=K3YD59_SETIT)

HSP 1 Score: 166 bits (420), Expect = 3.330e-44
Identity = 87/186 (46.77%), Postives = 125/186 (67.20%), Query Frame = 1
Query:    1 TYNSADTVFD-----DADARPFPVELLNSLTPPGMPPHRLRLKLGTPVILLRNLNASGGQADGTRVIVSVTHRTFVECDITTGTDAGRRVYVPRIRVTAADSDLPFTLRRRQLPLNVACSLTINKAQGQTLAAVDLYLHTQVFTHGQAYVAFSRVSEPAALTVALPNHYRAPEGNYFDNIVYEDIL 543
            TY S+DTV       +++ + +P E LNSL  PG+P H+L+LK+G P++LLRN+N S G  +GTR+ ++   + F+E  I TGT+ G +VY+PRI ++  +S  PF L+RRQ P+ V  ++TINK+QGQ+L  V LYL  QVFTHGQ YVA SRV+    L + + +   +PE N   NIVY++IL
Sbjct: 1112 TYLSSDTVCKAISTKESEDQLYPTEFLNSLKFPGIPNHKLQLKVGLPIMLLRNINQSAGLCNGTRLTITQLGKWFIEAQIITGTNIGNKVYIPRIIMSPTESKWPFVLKRRQYPITVCFAMTINKSQGQSLKNVGLYLPKQVFTHGQLYVAVSRVTSREGLKILISDE-ESPEDNMAKNIVYKEIL 1296          
BLAST of mRNA_P-wetherbeei_contig6986.3.1 vs. uniprot
Match: A0A814L516_9BILA (ATP-dependent DNA helicase n=1 Tax=Brachionus calyciflorus TaxID=104777 RepID=A0A814L516_9BILA)

HSP 1 Score: 166 bits (420), Expect = 3.340e-44
Identity = 84/180 (46.67%), Postives = 118/180 (65.56%), Query Frame = 1
Query:    4 YNSADTVFDDADARPFPVELLNSLTPPGMPPHRLRLKLGTPVILLRNLNASGGQADGTRVIVSVTHRTFVECDITTGTDAGRRVYVPRIRVTAADSDLPFTLRRRQLPLNVACSLTINKAQGQTLAAVDLYLHTQVFTHGQAYVAFSRVSEPAALTVALPNHYRAPEGNYFDNIVYEDIL 543
            Y S D+V +DA    +P+E LN++   GMPPH+L LK+G P+ILLRN++ + G  +GTR+I+S  H   +EC I  G +A + V++PR+ +   DS LPF L+R Q P+  A ++TINKAQGQTL  V ++L   VFTHGQ YVAFSRV++   L + L N     + N   NIVY ++L
Sbjct: 1146 YYSVDSVLNDAHTALYPLEFLNTINLSGMPPHKLNLKIGMPIILLRNVSPAEGLCNGTRLIISKFHSRVIECKIAVGEEANKTVFIPRMPLVPTDSGLPFELKRLQFPIRPAFAITINKAQGQTLEKVGVFLEEPVFTHGQLYVAFSRVTKRQNLKICLNN-----QKNVTKNIVYTEVL 1320          
BLAST of mRNA_P-wetherbeei_contig6986.3.1 vs. uniprot
Match: UPI001F5F9C42 (ATP-dependent DNA helicase PIF1-like n=2 Tax=Hydra vulgaris TaxID=6087 RepID=UPI001F5F9C42)

HSP 1 Score: 156 bits (395), Expect = 3.950e-44
Identity = 84/185 (45.41%), Postives = 118/185 (63.78%), Query Frame = 1
Query:    4 YNSADTVFDDA--DARPFPVELLNSLTPPGMPPHRLRLKLGTPVILLRNLNASGGQADGTRVIVSVTHRTFVECDITTGTDAGRRVYVPRIRVTAADSDLPFTLRRRQLPLNVACSLTINKAQGQTLAAVDLYLHTQVFTHGQAYVAFSRVSEPAALTVALPNH-YRAPEGN--YFDNIVYEDIL 543
            Y SADT+  D   +   FPVE LNSLTP GMP H L+LK+G  ++LLRNL+   G  +GTR+IV      +++  + TG   G+RV+VPR+++T +DS+LPFTL+RRQ P+ +A S+TINK+QGQT   V +YL    F+HGQ YVA SR      L   +  H  +    N  Y +N+V+ ++L
Sbjct:   92 YLSADTIETDDLNEINNFPVEFLNSLTPSGMPVHCLKLKIGAVIMLLRNLDLKAGLCNGTRLIVRALQNNYIDGQVLTGVSVGKRVFVPRVQLTQSDSNLPFTLKRRQFPVRLAYSMTINKSQGQTFDKVGIYLKNPCFSHGQLYVACSRTRSFNTLFFKIDEHSLQGMSFNKCYTNNVVFTNVL 276          
BLAST of mRNA_P-wetherbeei_contig6986.3.1 vs. uniprot
Match: A0A6S7PDI6_LACSI (ATP-dependent DNA helicase n=1 Tax=Lactuca saligna TaxID=75948 RepID=A0A6S7PDI6_LACSI)

HSP 1 Score: 154 bits (390), Expect = 4.110e-44
Identity = 77/167 (46.11%), Postives = 108/167 (64.67%), Query Frame = 1
Query:   49 FPVELLNSLTPPGMPPHRLRLKLGTPVILLRNLNASGGQADGTRVIVSVTHRTFVECDITTGTDAGRRVYVPRIRVTAADSDLPFTLRRRQLPLNVACSLTINKAQGQTLAAVDLYLHTQVFTHGQAYVAFSRVSEPAALTVALPNHYRAPEGNYFDNIVYEDILRK 549
            +P+E LN LT PG+PPH+L LK+  P++LLRN+N   G  +GTR+IVS    T +E  I TGT   +RVY+PRI+     SDLPF   R+Q P+ V  ++TINK+QGQ+L  + +YL   VF HGQ YVA SR + P ++ + L N     + N   N+VY+++L K
Sbjct:   29 YPIEYLNQLTFPGIPPHKLLLKVDCPIMLLRNINQKEGLCNGTRMIVSQLLPTLIEATIITGTSIEKRVYIPRIKFIHKSSDLPFVFSRKQFPVKVCYAMTINKSQGQSLRKIGIYLSQPVFAHGQLYVALSRATSPDSIRILL-NKTDTCKNNETKNVVYKELLHK 194          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6986.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8B6DQX2_MYTGA1.020e-4748.35ATP-dependent DNA helicase n=1 Tax=Mytilus gallopr... [more]
UPI001D014C457.630e-4748.13ATP-dependent DNA helicase PIF1-like n=1 Tax=Triti... [more]
A0A2I0AB67_9ASPA6.400e-4649.09ATP-dependent DNA helicase n=1 Tax=Apostasia shenz... [more]
A0A8I7B9Y8_HORVV8.180e-4548.48ATP-dependent DNA helicase n=1 Tax=Hordeum vulgare... [more]
K3YXY4_SETIT9.270e-4546.77ATP-dependent DNA helicase n=2 Tax=Setaria italica... [more]
UPI0019D685D31.410e-4447.85ATP-dependent DNA helicase PIF1-like n=1 Tax=Panic... [more]
K3YD59_SETIT3.330e-4446.77ATP-dependent DNA helicase n=2 Tax=Setaria italica... [more]
A0A814L516_9BILA3.340e-4446.67ATP-dependent DNA helicase n=1 Tax=Brachionus caly... [more]
UPI001F5F9C423.950e-4445.41ATP-dependent DNA helicase PIF1-like n=2 Tax=Hydra... [more]
A0A6S7PDI6_LACSI4.110e-4446.11ATP-dependent DNA helicase n=1 Tax=Lactuca saligna... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6986contigP-wetherbeei_contig6986:2525..3076 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog4555.Si012162m
PFAMsHelitron_like_N,Herpes_Helicase,PIF1
Model size552
Max annot lvl35493|Streptophyta
KEGG koko:K15255
Hectar predicted targeting categoryother localisation
Exons1
Evalue5.46e-45
EggNOG OGsCOG0507@1|root,KOG0987@2759|Eukaryota,37Q72@33090|Viridiplantae,3GCCF@35493|Streptophyta,3M3EP@4447|Liliopsida,3ITHE@38820|Poales
EC3.6.4.12
DescriptionBelongs to the helicase family
Cds size552
COG categoryD
BRITEko00000,ko01000,ko03029,ko03032
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186949.8867826-CDS-P-wetherbeei_contig6986:2524..30761683186949.8867826-CDS-P-wetherbeei_contig6986:2524..3076Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6986 2525..3076 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6986.3.1prot_P-wetherbeei_contig6986.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6986 2525..3076 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6986.3.1

>prot_P-wetherbeei_contig6986.3.1 ID=prot_P-wetherbeei_contig6986.3.1|Name=mRNA_P-wetherbeei_contig6986.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=184bp
TYNSADTVFDDADARPFPVELLNSLTPPGMPPHRLRLKLGTPVILLRNLN
ASGGQADGTRVIVSVTHRTFVECDITTGTDAGRRVYVPRIRVTAADSDLP
FTLRRRQLPLNVACSLTINKAQGQTLAAVDLYLHTQVFTHGQAYVAFSRV
SEPAALTVALPNHYRAPEGNYFDNIVYEDILRK*
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mRNA from alignment at P-wetherbeei_contig6986:2525..3076-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6986.3.1 ID=mRNA_P-wetherbeei_contig6986.3.1|Name=mRNA_P-wetherbeei_contig6986.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=552bp|location=Sequence derived from alignment at P-wetherbeei_contig6986:2525..3076- (Phaeothamnion wetherbeei SAG_119_79)
ACGTACAACAGCGCCGACACCGTCTTCGACGACGCCGACGCTCGCCCTTT TCCCGTGGAACTCCTAAACTCGCTCACGCCTCCAGGCATGCCGCCGCACC GGCTTCGACTCAAGCTCGGTACGCCGGTCATCCTGCTACGCAATCTCAAC GCAAGCGGCGGACAGGCAGACGGCACGCGAGTTATTGTGAGTGTCACGCA CCGGACCTTTGTTGAGTGCGACATCACAACGGGCACCGACGCCGGACGGC GCGTCTACGTTCCGCGCATCCGCGTTACTGCAGCTGACAGCGACCTCCCG TTCACCCTTCGGCGAAGGCAGCTCCCGTTAAACGTCGCGTGCAGCTTAAC CATCAACAAAGCCCAAGGGCAAACGTTAGCTGCCGTCGACCTCTACCTTC ACACTCAAGTCTTCACGCACGGTCAAGCTTACGTTGCTTTCTCGCGTGTC AGCGAGCCCGCCGCTCTGACAGTGGCTTTGCCAAATCATTATCGAGCGCC AGAGGGAAATTATTTCGACAACATTGTTTACGAGGACATTTTGCGTAAAT AA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6986:2525..3076-

>mRNA_P-wetherbeei_contig6986.3.1 ID=mRNA_P-wetherbeei_contig6986.3.1|Name=mRNA_P-wetherbeei_contig6986.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=552bp|location=Sequence derived from alignment at P-wetherbeei_contig6986:2525..3076- (Phaeothamnion wetherbeei SAG_119_79)
ACGTACAACAGCGCCGACACCGTCTTCGACGACGCCGACGCTCGCCCTTT
TCCCGTGGAACTCCTAAACTCGCTCACGCCTCCAGGCATGCCGCCGCACC
GGCTTCGACTCAAGCTCGGTACGCCGGTCATCCTGCTACGCAATCTCAAC
GCAAGCGGCGGACAGGCAGACGGCACGCGAGTTATTGTGAGTGTCACGCA
CCGGACCTTTGTTGAGTGCGACATCACAACGGGCACCGACGCCGGACGGC
GCGTCTACGTTCCGCGCATCCGCGTTACTGCAGCTGACAGCGACCTCCCG
TTCACCCTTCGGCGAAGGCAGCTCCCGTTAAACGTCGCGTGCAGCTTAAC
CATCAACAAAGCCCAAGGGCAAACGTTAGCTGCCGTCGACCTCTACCTTC
ACACTCAAGTCTTCACGCACGGTCAAGCTTACGTTGCTTTCTCGCGTGTC
AGCGAGCCCGCCGCTCTGACAGTGGCTTTGCCAAATCATTATCGAGCGCC
AGAGGGAAATTATTTCGACAACATTGTTTACGAGGACATTTTGCGTAAAT
AA
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