mRNA_P-wetherbeei_contig698.1.2 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig698.1.2
Unique NamemRNA_P-wetherbeei_contig698.1.2
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig698.1.2 vs. uniprot
Match: A0A7S2Y1P7_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y1P7_9STRA)

HSP 1 Score: 104 bits (259), Expect = 8.490e-21
Identity = 57/132 (43.18%), Postives = 84/132 (63.64%), Query Frame = 2 
Query:  260 FHELVYRLRGPFWHREAPLPAFTKRYTVSVDAAVPTPLERAVMANVMCSKGTTYTDVAARMYAAEGLLPAAEYALFHRLTNEGITVAKGLPSGGKPAKTRRFRLSFVDSRLFFTWEARGVTSGIDIGQVLEV 655
            F + VYRL+GPFW++ A L  +    T  V  A  TP+E+A++A+VMC+KGTTY DVA +MY  + +L   E+ L+ RLT+  + + K   S  KPAK ++FRLSFV+  L+ TW  +    GI + +VL +
Sbjct:  221 FCQEVYRLQGPFWYKPAKLSVYRCTNT-PVGGAPLTPMEKAILASVMCTKGTTYVDVAVQMYTVQAVLSEEEFQLYQRLTSGEVELVKHAMSS-KPAK-KKFRLSFVNGALYLTWGDKNGYKGIGLHEVLTI 349
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BLAST of mRNA_P-wetherbeei_contig698.1.2 vs. uniprot
Match: A0A7S3UN15_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UN15_HETAK)

HSP 1 Score: 90.9 bits (224), Expect = 5.920e-18
Identity = 66/190 (34.74%), Postives = 94/190 (49.47%), Query Frame = 2 
Query:  347 VDAAVPTPLERAVMANVMCSKGTTYTDVAARMYAAEGLLPAAEYALFHRLTNEGITVAKGLPSGGKPAKTRRFRLSFVDSRLFFTWEARGVTSGIDIGQVLEVRAKAGPIRQSRAVHSGAASPXXXXXXXXXXXXXXXXXRDSGDDGRGWWTVSLAVPASTRTLDLFLPSWEDRDIWLGMMRALVAAEHG 916
            V  A  TP+E+A++A+VMC+KGTTY DVA +MY  + +L  AE+ L+ +LT+  + + K   +  KPA+ +RFRLSFV   L+ TWE R    GI + +VL + A             G  S                   D GD       +SL +P   R LDL   + + R +W G +  LV  E G
Sbjct:    3 VGGAPLTPMEKAILASVMCTKGTTYVDVAVQMYTVQAVLSEAEFQLYQKLTSGEVELVKHA-ARAKPAR-KRFRLSFVSGALYLTWEDRNGYKGIGLHEVLTLVA-------------GNRS------------------EDGGD-----LYLSLLLP--DRALDLSFDTADQRRMWQGFLNTLVLKERG 152
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BLAST of mRNA_P-wetherbeei_contig698.1.2 vs. uniprot
Match: A0A7R9UCW5_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UCW5_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 1.270e-14
Identity = 74/228 (32.46%), Postives = 105/228 (46.05%), Query Frame = 2 
Query:  254 ASFHELVYRLRGPFWHREAPLPAFTKRYTVSVDAAVPTPLERAVMANVMCSKGTTYTDVAARMYAAEGLLPAAEYALFHRLTNEG--ITVAKGLPSGGKPAK----TRRFRLSFVDSRLFFTWEARGVTSGIDIGQVLEVRAKAGPIRQSRAVHSGAASPXXXXXXXXXXXXXXXXXRDSGDDGRGWWT-VSLAVPASTRTLDLFLPSWEDRDIWLGMMRALVAAEHG 916
            A+F   VYRLRGPFW REA L  +       VDA++ T  E  V+ N++CS  TT+ +VAA+++    LL    Y  F  L  +   ITVA     G    +    TR+FR+SFV   LF TW+ +  T G+ I ++ E+R      R +  + +G                     RDS        T   L++ +S RTLDL   S E R  +  ++  L   E G
Sbjct:  348 ATFSPEVYRLRGPFWFREALLSRYHNGRK-PVDASL-TQREELVINNMLCSSDTTHIEVAAQLFVVRELLDKDLYEYFESLLIQDTPITVAGDTLRGRSQTRGKTVTRKFRISFVQGELFLTWKTKYGTQGVGIKEIRELRCYKEDGRGAWVIFTGLTH----------QEGKQLMSRDSMKTSSNDLTSCRLSLMSSDRTLDLVFDSSEKRSTFQTLIAVLANKEKG 563
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BLAST of mRNA_P-wetherbeei_contig698.1.2 vs. uniprot
Match: A0A8J2T283_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2T283_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 1.980e-14
Identity = 69/226 (30.53%), Postives = 101/226 (44.69%), Query Frame = 2 
Query:  257 SFHELVYRLRGPFWHREAPLPAFTKRYTVSVDAAVPTPLERAVMANVMCSKGTTYTDVAARMYAAEGLLPAAEYALFHRLTNEGITVAKGLPSGGKPAKTRRFRLSFVDSRLFF----TWEARGVT-SGIDIGQVLEVRAKAGPIRQSRAVHSGAASPXXXXXXXXXXXXXXXXXRDSG---DDGRGWWTVSLAVPASTRTLDLFLPSWEDRDIWLGMMRALVAAE 910
            +F + +YRLRGPFW REA LP +   + V           R     ++CS GTTYT +AA MY     L   EY+LF  LT  G++V K     G+P+K + F+LS V   ++     TW+ +  +  G+++  V         IR SR   +                      R +G   D+G+      L++    R+LDL     E R++W   M ALV  E
Sbjct:  158 TFADELYRLRGPFWWREAVLPDYKHHHIVQDTENED---RRKAAERILCSPGTTYTAMAATMYTIRATLAEKEYSLFEALTTTGVSVTKHPFRSGRPSK-KTFQLSLVQGDMYLYMYLTWKGKRTSIQGVELASV---------IRISRGRDTDVL-------------------RRTGKVKDEGK-----YLSLVTQDRSLDLCFDDEEQRELWWRTMTALVDVE 346
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BLAST of mRNA_P-wetherbeei_contig698.1.2 vs. uniprot
Match: A0A7S1XPI0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XPI0_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 2.460e-14
Identity = 58/145 (40.00%), Postives = 80/145 (55.17%), Query Frame = 2 
Query:  254 ASFHELVYRLRGPFWHREAPLPAFTKRYTVSVDAAVPTPLERAVMANVMCSKGTTYTDVAARMYAAEGLLPAAEYALFHRLTNEGI-----TVAKGLPSGGKPA-----KTRRFRLSFVDSRLFFTWEARGVTSGIDIGQVLEVR 658
            A+F   VYRLRGPFW REA L  +       VD  + T  E  VM++V+CS  T++ DVAA+++ A  L+P   Y  F  L    +     T  +G  SGG  A      TR+FR+SFV  RL+ TW+ +  T GI+I  + E+R
Sbjct:  450 ATFSAEVYRLRGPFWWREAILNRYGNG-NKPVDTFL-TLAEEQVMSSVLCSPDTSHVDVAAQIFVARELMPEDLYTQFVALLTSDVPIGVSTAVRG--SGGTGAGLGKFATRKFRISFVTGRLYLTWKGKYGTQGIEINTISELR 590
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BLAST of mRNA_P-wetherbeei_contig698.1.2 vs. uniprot
Match: A0A835Z614_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z614_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 3.150e-9
Identity = 45/109 (41.28%), Postives = 57/109 (52.29%), Query Frame = 2 
Query:  257 SFHELVYRLRGPFWHREAPLPAFTKRYTVSVDAAVP-TPLERAVMANVMCSKGTTYTDVAARMYAAEGLLPAAEYALFHRLTNEGITVAKGLPSGGKPAKTRRFRLSFV 580
            +FHE VYRLRGPF+ R APL A+   + V   A    T  ER ++  V+  K T Y+ V    + A  +L A E  LF  L  EG+ V   +   G     RRFRLSFV
Sbjct:   21 TFHEEVYRLRGPFFVRSAPLCAYRGSHRVREHAEERGTCEERTLLRKVLLGKDTRYSHVECARFLAHAVLSAEERHLFDVLVAEGVAVL--ICGAGGARVRRRFRLSFV 127
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BLAST of mRNA_P-wetherbeei_contig698.1.2 vs. uniprot
Match: A0A7S2CN99_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CN99_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 1.030e-8
Identity = 34/88 (38.64%), Postives = 50/88 (56.82%), Query Frame = 2 
Query:  260 FHELVYRLRGPFWHREAPLPAFTKRYTVSVDAAVPTPLERAVMANVMCSKGTTYTDVAARMYAAEGLLPAAEYALFHRLTNEGITVAK 523
            F + +YRL+GPFW++EA L  + K + +       TP      A+V+C+   TY  +AA MY     L  AEYALF  LT++G+ + K
Sbjct:   32 FSDELYRLKGPFWYKEAALQEY-KYHPIKASVPDDTP------ASVLCTPDMTYATMAATMYTIRAKLDEAEYALFESLTSDGVMLMK 112
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig698.1.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A7S2Y1P7_9STRA8.490e-2143.18Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S3UN15_HETAK5.920e-1834.74Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7R9UCW5_9STRA1.270e-1432.46Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A8J2T283_9STRA1.980e-1430.53Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S1XPI0_9STRA2.460e-1440.00Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A835Z614_9STRA3.150e-941.28Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A7S2CN99_9STRA1.030e-838.64Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig698contigP-wetherbeei_contig698:2..2098 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1312
Hectar predicted targeting categoryother localisation
Exons4
Cds size855
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig698.1.2prot_P-wetherbeei_contig698.1.2Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig698 74..1713 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186949.3873956-UTR-P-wetherbeei_contig698:1..731683186949.3873956-UTR-P-wetherbeei_contig698:1..73Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig698 2..73 -
1683186949.4505258-UTR-P-wetherbeei_contig698:1713..20981683186949.4505258-UTR-P-wetherbeei_contig698:1713..2098Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig698 1714..2098 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186949.398865-CDS-P-wetherbeei_contig698:73..6701683186949.398865-CDS-P-wetherbeei_contig698:73..670Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig698 74..670 -
1683186949.4084694-CDS-P-wetherbeei_contig698:980..10651683186949.4084694-CDS-P-wetherbeei_contig698:980..1065Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig698 981..1065 -
1683186949.4280837-CDS-P-wetherbeei_contig698:1280..13971683186949.4280837-CDS-P-wetherbeei_contig698:1280..1397Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig698 1281..1397 -
1683186949.4402895-CDS-P-wetherbeei_contig698:1657..17131683186949.4402895-CDS-P-wetherbeei_contig698:1657..1713Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig698 1658..1713 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig698.1.2

>prot_P-wetherbeei_contig698.1.2 ID=prot_P-wetherbeei_contig698.1.2|Name=mRNA_P-wetherbeei_contig698.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=285bp
MANVMCSKGTTYTDVAARMYAAEGLLPAAEYALFHRLTNEGITVAKGLPS
GGKPAKTRRFRLSFVDSRLFFTWEARGVTSGIDIGQVLEVRAKAGPIRQS
RAVHSGAASPPSSEPAARPPPAPEDEERDSGDDGRGWWTVSLAVPASTRT
LDLFLPSWEDRDIWLGMMRALVAAEHGAPKRSSLYGDDGGRDAGDSVGNL
DEGNMEPHCCCCQRGGGCCESRNGAMPCCGAVAGGCNCCRMGRKADDSAR
RRNREGGSSGESGGGDDDWEGIFRLARFVIIHAA*
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mRNA from alignment at P-wetherbeei_contig698:2..2098-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig698.1.2 ID=mRNA_P-wetherbeei_contig698.1.2|Name=mRNA_P-wetherbeei_contig698.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2097bp|location=Sequence derived from alignment at P-wetherbeei_contig698:2..2098- (Phaeothamnion wetherbeei SAG_119_79)
ACCGGCGCCGCATGCTGGCGGACAAGAAGAAGTGGACCATTCACGCCATC
GCCAATGCCCCAAACGACCTCCAAGCATGGTATCAAGTGAGTGGGTTGAA
TATTTTTGCGGTAGTCATGCGTCTCCCGTCGTCCAAGCCCGCCGAGGCAC
GCCAGTCGATAATGAGAAGAACCTGCCATTCGTCGTTTTGTTGGGGTGCG
GGAGCAATGCAAGCGCAGCCATGCAATGTCGCGCTCTTTAAAAATTGCCA
CAGGCGTCCTTCCACGAGCTCGTGTACCGCCTCCGGGGCCCCTTCTGGCA
CCGCGAGGCGCCCCTTCCGGCCTTCACGAAGCGCTACACTGTTTCGGTGG
ATGCGGCGGTCCCGACGCCCCTGGAGCGCGCCGTCATGGCAAATGTCATG
TGCTCCAAAGGAACCACGTACACTGACGTCGCTGCGCGCATGTGATTTAC
TGATTAGCTGGGCCCGCTATTTACAGTCATCTTGAGTTGGTGCTTGAAGG
AACGATGGAAGGCACTTGATGAGAAGGTGCTAAGTGGGAGCAGAAGTTGT
ACTCACGAGACACTTTTGAGCTCTAGCTTTCAGCCCTCTTCCGCGTTTCC
TAGTAGTCTATTTTTCTCATTTGCAATGTGGGCCGAAGCAACTGCATTTA
CGTCCTTTGATGAGCAGTATTTATTCTTTTCTCCCTCTCCCGTCTTCGCA
GGTACGCTGCCGAGGGCCTCCTGCCGGCGGCGGAGTACGCGCTCTTCCAC
CGGCTAACCAACGAGGGCATCACTGTCGCCAAGGGCCTGCCGTCGGGGGG
CAAGCCTGCGAAGACTAGGTGCGCTGCCTTTTTGTCCGTTCCTGGAATGT
CTTTTGAAGGATGCCAAAGGGTAAAATTGGTTGCCTTGAACCTTGCCAAC
TAATGGTGTGATGCCGTTTTTGCATGGCACTATGCATCGTGCTAGGACTT
GTAGCATATGCTCGTTCGTTCACTCTCATTGTTCGCCATCAACCATTGGC
TCCGCCGGTAATGCGCCACCGTGCCATTCGCAGGAGGTTCCGGCTCTCGT
TCGTCGATTCCAGGCTGTTCTTCACATGGGAGGCAAGGGGTGTAACCTCC
GGCATCGACATTGGGCAGGTTGACCCTCATCATCTGACGCAACTCCGCGG
CCTTGTTGAGCGCTATTCGGCGCTTTCCATGTATTTTCTTAAGTTATCGT
GTTGGCCCTCTTGCCGGCTTTCTGACATTGTCTTTGTTCGACTGCTGGAA
GAGACGTGTTTGTGTTCAACCCACCACCGAGCAGCTTCAGCGGAGCGCCG
CCCTGCACGTTTTTCCCCGCCTGGGGTACGCCCACTGCAGTAAACTTTTG
GTCGTACTTGCCATGTTTTCTCGCTGCCGTCACTCCGTTTTACCACAAAA
CTTTTCTGCCTGTGCTTCTACCGGGCAGGTCCTTGAAGTTCGTGCAAAAG
CCGGCCCCATCCGGCAAAGCCGAGCTGTTCATTCCGGCGCCGCATCTCCA
CCGTCGTCTGAGCCGGCCGCACGACCGCCACCGGCGCCTGAGGACGAAGA
AAGAGATTCGGGCGACGATGGCAGAGGATGGTGGACTGTGTCGCTGGCGG
TACCGGCCAGCACGCGCACGCTGGATCTGTTCCTGCCATCGTGGGAGGAC
CGGGACATCTGGCTGGGGATGATGCGAGCGCTGGTGGCGGCAGAGCATGG
AGCACCGAAACGTTCCAGCTTGTATGGCGACGACGGCGGCAGGGACGCCG
GTGACAGCGTCGGAAACCTCGACGAAGGAAACATGGAGCCCCACTGCTGC
TGCTGTCAGCGCGGCGGCGGCTGCTGTGAGAGCCGGAACGGCGCTATGCC
GTGTTGCGGCGCGGTTGCAGGGGGCTGCAATTGTTGTCGGATGGGGAGGA
AAGCGGATGATTCTGCCCGTCGCAGAAACAGAGAAGGCGGATCCTCCGGC
GAGAGCGGCGGCGGCGACGATGATTGGGAAGGAATATTTCGCCTCGCCCG
CTTTGTAATCATTCATGCAGCATAGCTAGCACTCTAGTGACCCCCGCCCC
GCGCCTCCCCAATCCAGCTCAGCGCATTTACGATCTATTTTTTGGGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig698:2..2098-

>mRNA_P-wetherbeei_contig698.1.2 ID=mRNA_P-wetherbeei_contig698.1.2|Name=mRNA_P-wetherbeei_contig698.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=855bp|location=Sequence derived from alignment at P-wetherbeei_contig698:2..2098- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCAAATGTCATGTGCTCCAAAGGAACCACGTACACTGACGTCGCTGC
GCGCATGTACGCTGCCGAGGGCCTCCTGCCGGCGGCGGAGTACGCGCTCT
TCCACCGGCTAACCAACGAGGGCATCACTGTCGCCAAGGGCCTGCCGTCG
GGGGGCAAGCCTGCGAAGACTAGGAGGTTCCGGCTCTCGTTCGTCGATTC
CAGGCTGTTCTTCACATGGGAGGCAAGGGGTGTAACCTCCGGCATCGACA
TTGGGCAGGTCCTTGAAGTTCGTGCAAAAGCCGGCCCCATCCGGCAAAGC
CGAGCTGTTCATTCCGGCGCCGCATCTCCACCGTCGTCTGAGCCGGCCGC
ACGACCGCCACCGGCGCCTGAGGACGAAGAAAGAGATTCGGGCGACGATG
GCAGAGGATGGTGGACTGTGTCGCTGGCGGTACCGGCCAGCACGCGCACG
CTGGATCTGTTCCTGCCATCGTGGGAGGACCGGGACATCTGGCTGGGGAT
GATGCGAGCGCTGGTGGCGGCAGAGCATGGAGCACCGAAACGTTCCAGCT
TGTATGGCGACGACGGCGGCAGGGACGCCGGTGACAGCGTCGGAAACCTC
GACGAAGGAAACATGGAGCCCCACTGCTGCTGCTGTCAGCGCGGCGGCGG
CTGCTGTGAGAGCCGGAACGGCGCTATGCCGTGTTGCGGCGCGGTTGCAG
GGGGCTGCAATTGTTGTCGGATGGGGAGGAAAGCGGATGATTCTGCCCGT
CGCAGAAACAGAGAAGGCGGATCCTCCGGCGAGAGCGGCGGCGGCGACGA
TGATTGGGAAGGAATATTTCGCCTCGCCCGCTTTGTAATCATTCATGCAG
CATAG
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