mRNA_P-wetherbeei_contig6969.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6969.1.1
Unique NamemRNA_P-wetherbeei_contig6969.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig6969.1.1 vs. uniprot
Match: A0A6H5KRK2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRK2_9PHAE)

HSP 1 Score: 119 bits (299), Expect = 1.120e-28
Identity = 60/121 (49.59%), Postives = 83/121 (68.60%), Query Frame = 1 
Query:    1 EFPRKKVVSEESFLLERADVESEFIKRRREELHHFLRRLFNQAPSLWDHEFVQNFFNLQSLDVGKTYAERSRAM--TDGGSDFTLAHYNPSDPAQWNPYTMAMQASEVTRARTANKATFSN 357
            EFP K+VV+EESFL +R+D  SEF++ R+E+L  FLR+LFN+ P LW+H  V  FFNL++LD GK+YAER+ A      G    L +Y+PS  ++WNPY++AMQA++  R R       SN
Sbjct:  129 EFPGKRVVTEESFLGDRSDANSEFVRHRKEQLGSFLRQLFNKNPELWEHPDVVEFFNLEALDQGKSYAERAHAAGGVGNGVGHGLRNYDPSVASEWNPYSIAMQAAQENRTRNTGYVAHSN 249
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BLAST of mRNA_P-wetherbeei_contig6969.1.1 vs. uniprot
Match: D7FWZ4_ECTSI (PX domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWZ4_ECTSI)

HSP 1 Score: 89.7 bits (221), Expect = 3.940e-19
Identity = 43/73 (58.90%), Postives = 58/73 (79.45%), Query Frame = 1 
Query:    1 EFPRKKVVSEESFLLERADVESEFIKRRREELHHFLRRLFNQAPSLWDHEFVQNFFNLQSLDVGKTYAERSRA 219
            EFP K+VV+EESFL +R+D  SEF++ R+E+L  FLR+LFN+ P LW+H  V  FFNL++LD GK+YAER+ A
Sbjct:  129 EFPGKRVVTEESFLGDRSDANSEFVRHRKEQLGSFLRQLFNKNPELWEHPDVVEFFNLEALDQGKSYAERAHA 201
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6969.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KRK2_9PHAE1.120e-2849.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FWZ4_ECTSI3.940e-1958.90PX domain-containing protein n=1 Tax=Ectocarpus si... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6969contigP-wetherbeei_contig6969:12..2654 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size489
Hectar predicted targeting categoryother localisation
Exons5
Ec32 ortholog descriptionPhox homologous domain
Ec32 orthologEc-15_001130.1
Cds size489
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186948.6278481-CDS-P-wetherbeei_contig6969:11..1111683186948.6278481-CDS-P-wetherbeei_contig6969:11..111Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6969 12..111 -
1683186948.6363194-CDS-P-wetherbeei_contig6969:142..2021683186948.6363194-CDS-P-wetherbeei_contig6969:142..202Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6969 143..202 -
1683186948.6443102-CDS-P-wetherbeei_contig6969:1461..16131683186948.6443102-CDS-P-wetherbeei_contig6969:1461..1613Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6969 1462..1613 -
1683186948.6523256-CDS-P-wetherbeei_contig6969:2016..21031683186948.6523256-CDS-P-wetherbeei_contig6969:2016..2103Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6969 2017..2103 -
1683186948.6604342-CDS-P-wetherbeei_contig6969:2564..26541683186948.6604342-CDS-P-wetherbeei_contig6969:2564..2654Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6969 2565..2654 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6969.1.1prot_P-wetherbeei_contig6969.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6969 12..2654 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6969.1.1

>prot_P-wetherbeei_contig6969.1.1 ID=prot_P-wetherbeei_contig6969.1.1|Name=mRNA_P-wetherbeei_contig6969.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=163bp
EFPRKKVVSEESFLLERADVESEFIKRRREELHHFLRRLFNQAPSLWDHE
FVQNFFNLQSLDVGKTYAERSRAMTDGGSDFTLAHYNPSDPAQWNPYTMA
MQASEVTRARTANKATFSNWHTNCGRGDTGGGGGSSGGGGGGGCSGRGDG
NLGQKGRFRGPDG
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mRNA from alignment at P-wetherbeei_contig6969:12..2654-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6969.1.1 ID=mRNA_P-wetherbeei_contig6969.1.1|Name=mRNA_P-wetherbeei_contig6969.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2643bp|location=Sequence derived from alignment at P-wetherbeei_contig6969:12..2654- (Phaeothamnion wetherbeei SAG_119_79)
GAATTCCCGCGAAAGAAGGTGGTTTCGGAGGAATCGTTTCTGCTCGAGCG
GGCAGACGTTGAAAGCGAGTTCATCAAGCGCCGCCGAGAGGTCTGTCGGA
ACAAAAAAGAACGGTTTCTTTCGGAGAAGTTCGTCTGCTAAATTTCGTTG
TCTGCCCACAGAGGCGGCGTGCCGGCGGGGTAAGCTCCTTTTGGCTGTGC
AATGATGGGCCGGTCAGCCGTGCTTTTGGACGCTATATGACGTGTGTTCT
CTTTCGAAGTGAGGCGTCGAATATCAGACTGCTGGGTGGGGTTGCGAGAC
CCGACAGGCCGGCGGAGTTGCGGATAGAGCAAGCAACAGCCCAACCTGCC
GACTCTGGACACTGCACTGAGTCCCGTTTCTTTAACCTGCCTATCTATCT
GCTTTCCTTTCGGCCTATGTCAATCGCTCGCTTCTTTCCTTGTAATTGCT
GCTGCTGCTGCGCTTGTGCGTAAACCCTGCTGACGGGCTGGACGGGGCTG
GACCGGATTGGATTGGGTTGGACTGAACCGGACCTTGTCGGAGCGCCCCA
GGAGCTGCACCACTTCCTGCGGCGGCTGTTCAACCAGGCGCCGAGCCTCT
GGGACCACGAGTTCGTCCAGAACTTCTTCAACCTTCAGGTCTGTACTTGA
AAGAAACGGTTTTTCAGAAACAGAACAGCTGTTTCCTTGACTATGCGTGG
GGGCAGCGTCACCCTGTGACCGCCGCCGCCTGTGTCGTGGAAGCGGGTAG
TGCTGGCAACGTCTCAGCGCAGAGCGTCTCCTCGCTCTCTCGCTGCGGTT
CGAAGTGCTTTTTGTAAAAAGTGTTTCTGATCAGGGCCGTCCCGGAATTT
CAAGCCCCTTCTCAACGGGTTCTGGCCACTTCTGAGATGAGAGTCCGTTC
AGCTTTTATTTAAATCGCATTATTAACGTGCGTAACTGACTGGCACCTGT
ATGAAACCGGCCATAAGCTGTCTGAAACATTTTAGACCATCGTCCGCGTC
TTCCGCGACTGCTGCCCCTCCATGCGCCACCGGACGGACAGTCGCTGGAC
GTGGGAAAGACGTACGCGGAGCGGTCGCGGGCCATGACGGACGGCGGTTC
GGACTTTACGCTGGCGCACTACAATCCGTCGGACCCGGCCCAGTGGAATC
CGTACACTATGGCCATGCAGGCTTCGGAAGTAACCCGCGCTAGGTGAGAT
ATCTCGATAGCTAGTTCAACGCGAGTACGGCAGATGGAGAAAAGAAGAAA
GCTCTTTCGCCTATTACTTCCTGCTTTTCTCTTCCCTCTCCCTGCGAGAA
TGGTTGGCAACGGATTCAGCGTGGCACCCCTGCACATGGCTATGCAGGTC
TCGACAGCGGCGCACAGCCTCCGTTTTGGCGTTGATAGCTCTTTCCGCTT
TGTATTCCGTGACATCTGACATCTGTCGTCTCGTTTCACTTTGCCAAAAA
TGGTGTGCTTCTTGGAAAACCGGCACTGGCAGGAACCACCCAAACCAGCA
GCTGCCCAGCACAGCCGGCAGTGCCGCCGCCCCGCCCGGACGGCCGGGAT
CGCTGCCGGCCGGCGGCGGTTTTGGCGGCGGTTTTGGTGGGTCCGGAGCG
GACCCAATCAAGGTCCGGTCACTGTGCGAGCTCGGCTTCTCCGAGGCGAC
GGCGGCGACGGCGCTCACAGCGGCGGGCGGTGATCCGGACCTCGCCGCCG
AGTACTGCATCAGTGGCATCCCGCCCTCGGCAGCGGCGGCGGCGGCAGCG
CAGGTGGGTCAAGGTTTTGAAACGGGTGCGGTATACATACGTAGGCTACG
CGGTCCGCCAAGCAAGAAATGCGCTGGCGCTTCCCCTTCCCTACCTTTTG
TTCGTTCCCGTGTTTGTCTTCTTTTGCGGCAGTCTCCGGTGGCCGTCGTT
TTCTGAACAGCACAGGTTCATCTTTATCTTTTCCTATTCTTTCTCTCCTC
GGTAATCCAAACGTACAGGCTGCGGCATCGCAACCTCGGCTACCACCACC
GGAGCCGCCGAAAAAGACGGGGTGGTTTGGCCTTGGGGGCAGCCGGAAAG
ACTCTGCCGCGCCAGCGCCGTCATCCGCCGGACTGCCGCCGGCGCCGGGC
GCGGGCCACCCGCGGCGTTACAGCGCCCCGAACGCAGGCAGCGGCACTGG
CTACGATGGTGGCGGCGGCGGCTACCACGGGACGGGCAGCTTCGGTGGCG
GTGGCAGCGTTTACGTCGGCGGTTACAGCAGCAGCAGCAGCACGACAGTC
GGATCGGGCGCCGCCGTTGGCTCCTACGGAGGAAGCCAGAGCTACGGAGC
GAGCGGCGGCGGTGGCGGCGGTTATGGTGGCCGCGCAACCGCTGCGGAAG
ATACCGCAGCCCACCCGTGGTCAATGGGTGCGGCCGCCGCCGGCGGCGGC
GGCGGCCACAAACCGGGGTCAGGTGGCCCGGGAACGGTCGACGTGTGAAC
AGAACTGCAAACAAAGCGACGTTCTCAAATTGGCACACAAACTGTGGGCG
TGGGGACACTGGGTTTAGTATGCAGGGCAGAGCGAAAGTACAGCGGCGGC
GGCGGCAGCAGCGGCGGCGGCGGCGGCGGCGGCTGCAGCGGCAGGGGCGA
TGGCAACTTGGGGCAAAAAGGGCGGTTCAGGGGCCCGGATGGT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6969:12..2654-

>mRNA_P-wetherbeei_contig6969.1.1 ID=mRNA_P-wetherbeei_contig6969.1.1|Name=mRNA_P-wetherbeei_contig6969.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=489bp|location=Sequence derived from alignment at P-wetherbeei_contig6969:12..2654- (Phaeothamnion wetherbeei SAG_119_79)
GAATTCCCGCGAAAGAAGGTGGTTTCGGAGGAATCGTTTCTGCTCGAGCG
GGCAGACGTTGAAAGCGAGTTCATCAAGCGCCGCCGAGAGGAGCTGCACC
ACTTCCTGCGGCGGCTGTTCAACCAGGCGCCGAGCCTCTGGGACCACGAG
TTCGTCCAGAACTTCTTCAACCTTCAGTCGCTGGACGTGGGAAAGACGTA
CGCGGAGCGGTCGCGGGCCATGACGGACGGCGGTTCGGACTTTACGCTGG
CGCACTACAATCCGTCGGACCCGGCCCAGTGGAATCCGTACACTATGGCC
ATGCAGGCTTCGGAAGTAACCCGCGCTAGAACTGCAAACAAAGCGACGTT
CTCAAATTGGCACACAAACTGTGGGCGTGGGGACACTGGCGGCGGCGGCG
GCAGCAGCGGCGGCGGCGGCGGCGGCGGCTGCAGCGGCAGGGGCGATGGC
AACTTGGGGCAAAAAGGGCGGTTCAGGGGCCCGGATGGT
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