mRNA_P-wetherbeei_contig6964.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6964.1.1
Unique NamemRNA_P-wetherbeei_contig6964.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig6964.1.1 vs. uniprot
Match: A0A7R9Z3H6_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9Z3H6_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 3.710e-6
Identity = 26/57 (45.61%), Postives = 36/57 (63.16%), Query Frame = 1 
Query:  211 DLSQIKLRAEQLNYYTSHDMLKADLLLMVNNCKRYNKPETDYYKCAVEVEGLIEECF 381
            DLS ++ R  + ++Y S  ML AD++ MVNNCK YN   + YY+CAV VE  +   F
Sbjct:   76 DLSTMEKRIRRGDWYKSKQMLYADMMRMVNNCKLYNDSSSPYYECAVSVEKFLPTIF 132
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BLAST of mRNA_P-wetherbeei_contig6964.1.1 vs. uniprot
Match: A0A7S1ZDN1_9STRA (Histone acetyltransferase n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1ZDN1_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 1.270e-5
Identity = 29/60 (48.33%), Postives = 39/60 (65.00%), Query Frame = 1 
Query:  211 DLSQIKLRAEQLNYYTSHDMLKADLLLMVNNCKRYNKPETDYYKCAVEVEGLIEECFRPD 390
            DLS I+ R  + ++Y S  ML ADL+ MVNNCK YN   + YY+CAV++E  +   F PD
Sbjct:  453 DLSTIEKRIRRGDWYKSKQMLYADLMRMVNNCKLYNDSSSPYYECAVQLEKFLGTIF-PD 511
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BLAST of mRNA_P-wetherbeei_contig6964.1.1 vs. uniprot
Match: A0A1E7FHJ9_9STRA (Histone acetyltransferase n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FHJ9_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 7.360e-5
Identity = 26/59 (44.07%), Postives = 37/59 (62.71%), Query Frame = 1 
Query:  211 DLSQIKLRAEQLNYYTSHDMLKADLLLMVNNCKRYNKPETDYYKCAVEVEGLIEECFRP 387
            DL  I  R  + ++Y S +ML ADL+LMVNNCK YN+  + Y +CA  +E  ++  F P
Sbjct:  290 DLLTIDKRVRKGDHYKSRNMLYADLMLMVNNCKLYNEEASTYVQCAQNLETYLKALFAP 348
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6964.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A7R9Z3H6_9STRA3.710e-645.61Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
A0A7S1ZDN1_9STRA1.270e-548.33Histone acetyltransferase n=1 Tax=Ditylum brightwe... [more]
A0A1E7FHJ9_9STRA7.360e-544.07Histone acetyltransferase n=1 Tax=Fragilariopsis c... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6964contigP-wetherbeei_contig6964:760..1651 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog264402.Cagra.0562s0050.1.p
PFAMsAcetyltransf_1,Bromodomain
Model size892
Max annot lvl35493|Streptophyta
KEGG koko:K06062
KEGG Pathwayko04330,ko04919,ko05166,ko05203,map04330,map04919,map05166,map05203
Hectar predicted targeting categorysignal peptide
GOsGO:0000003,GO:0000123,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0003824,GO:0004402,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0006325,GO:0006355,GO:0006464,GO:0006473,GO:0006475,GO:0006807,GO:0006996,GO:0007275,GO:0008080,GO:0008150,GO:0008152,GO:0009314,GO:0009416,GO:0009628,GO:0009653,GO:0009791,GO:0009889,GO:0009891,GO:0009893,GO:0009908,GO:0009987,GO:0010015,GO:0010321,GO:0010468,GO:0010484,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0016043,GO:0016407,GO:0016410,GO:0016569,GO:0016570,GO:0016573,GO:0016740,GO:0016746,GO:0016747,GO:0018193,GO:0018205,GO:0018393,GO:0018394,GO:0019219,GO:0019222,GO:0019538,GO:0022414,GO:0022622,GO:0031248,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0034212,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043543,GO:0043966,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0045893,GO:0045935,GO:0048364,GO:0048367,GO:0048518,GO:0048522,GO:0048580,GO:0048608,GO:0048731,GO:0048856,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051239,GO:0051252,GO:0051254,GO:0051276,GO:0060255,GO:0061458,GO:0061733,GO:0065007,GO:0070013,GO:0071704,GO:0071840,GO:0080090,GO:0090567,GO:0097159,GO:0099402,GO:1901363,GO:1901564,GO:1902493,GO:1902494,GO:1902680,GO:1903506,GO:1903508,GO:1905392,GO:1990234,GO:2000026,GO:2000112,GO:2001141
Exons1
Evalue2.28e-06
EggNOG OGsCOG5076@1|root,KOG1472@2759|Eukaryota,37JG7@33090|Viridiplantae,3G734@35493|Streptophyta,3HSZY@3699|Brassicales
EC2.3.1.48
DescriptionHistone acetyltransferase
Cds size456
COG categoryK
BRITEko00000,ko00001,ko01000,ko03021,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186948.5526934-CDS-P-wetherbeei_contig6964:759..12151683186948.5526934-CDS-P-wetherbeei_contig6964:759..1215Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6964 760..1215 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186948.564321-UTR-P-wetherbeei_contig6964:1215..16511683186948.564321-UTR-P-wetherbeei_contig6964:1215..1651Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6964 1216..1651 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6964.1.1prot_P-wetherbeei_contig6964.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6964 760..1215 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6964.1.1

>prot_P-wetherbeei_contig6964.1.1 ID=prot_P-wetherbeei_contig6964.1.1|Name=mRNA_P-wetherbeei_contig6964.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=152bp
MPPAILCLQCVLVLAFLRRTSHLCLPFFCLISRLRAFFDLSVRPAICCGG
CCGGGARTEPNKIKPKPVAADLSQIKLRAEQLNYYTSHDMLKADLLLMVN
NCKRYNKPETDYYKCAVEVEGLIEECFRPDSAEAAAANRKTASAAAQQQQ
R*
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mRNA from alignment at P-wetherbeei_contig6964:760..1651+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6964.1.1 ID=mRNA_P-wetherbeei_contig6964.1.1|Name=mRNA_P-wetherbeei_contig6964.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=892bp|location=Sequence derived from alignment at P-wetherbeei_contig6964:760..1651+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCCGCCGGCCATTCTTTGCTTGCAGTGCGTTCTCGTTCTTGCCTTTTT
GCGTCGGACGTCTCACCTCTGTCTTCCGTTCTTCTGCTTAATTTCACGCT
TGCGGGCTTTTTTCGATTTATCCGTCCGGCCGGCCATTTGCTGCGGCGGT
TGTTGCGGCGGCGGTGCACGAACCGAACCGAACAAAATCAAACCGAAACC
GGTCGCGGCAGACCTGTCGCAGATCAAGCTGCGGGCGGAGCAGCTAAACT
ACTACACGTCGCATGACATGCTCAAAGCGGACCTGTTGCTCATGGTCAAC
AACTGCAAGCGCTACAACAAGCCCGAGACGGACTACTACAAGTGCGCTGT
CGAGGTGGAGGGGCTCATTGAGGAGTGCTTCCGTCCCGACTCGGCCGAGG
CCGCCGCCGCCAACCGCAAGACGGCCAGCGCCGCCGCCCAGCAGCAGCAG
CGGTGATAGTGACGAGAGGTCGAGGCGGCGGATGGGGGCGGGGGGCGGCA
GCAGGTGGGCGGCGGCGGTGCGCGGCGGTAGACGGTGGGGAAGGAAAAGG
AGAGAAGCGGTCGTGACGCCGCGGAGGCGGTAGCGGCGAGGGCGGTAGCG
GTGGTATTGGCGGCGGCGGCGGCGTACCGCTGCAGCATAAGTGGTGGCAG
ACGGAGCGGCCGCGAAGGGTGGTAGAGCTGGTGGGGCGGGGCCGAGCGCT
GTCTTGTTGTTTCCTCCGCTTGGGAGGCTGGAATGTCCCAGGACTGTCTA
TTGACTGCTTGGTGCGGCATCTAGGGCCAATTGCACATAGTAAAGGATGA
CTGGCGTGGCAGATCGAGTATCGCTTATTCGATAGACTAATTTCTCAAAG
TCAAATATAAAATGATGGGATGGCGCGATGCCTGTGAGACTT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6964:760..1651+

>mRNA_P-wetherbeei_contig6964.1.1 ID=mRNA_P-wetherbeei_contig6964.1.1|Name=mRNA_P-wetherbeei_contig6964.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=456bp|location=Sequence derived from alignment at P-wetherbeei_contig6964:760..1651+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCCGCCGGCCATTCTTTGCTTGCAGTGCGTTCTCGTTCTTGCCTTTTT
GCGTCGGACGTCTCACCTCTGTCTTCCGTTCTTCTGCTTAATTTCACGCT
TGCGGGCTTTTTTCGATTTATCCGTCCGGCCGGCCATTTGCTGCGGCGGT
TGTTGCGGCGGCGGTGCACGAACCGAACCGAACAAAATCAAACCGAAACC
GGTCGCGGCAGACCTGTCGCAGATCAAGCTGCGGGCGGAGCAGCTAAACT
ACTACACGTCGCATGACATGCTCAAAGCGGACCTGTTGCTCATGGTCAAC
AACTGCAAGCGCTACAACAAGCCCGAGACGGACTACTACAAGTGCGCTGT
CGAGGTGGAGGGGCTCATTGAGGAGTGCTTCCGTCCCGACTCGGCCGAGG
CCGCCGCCGCCAACCGCAAGACGGCCAGCGCCGCCGCCCAGCAGCAGCAG
CGGTGA
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