mRNA_P-wetherbeei_contig6961.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6961.2.1
Unique NamemRNA_P-wetherbeei_contig6961.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6961.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6961contigP-wetherbeei_contig6961:1407..2303 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size775
Hectar predicted targeting categoryother localisation
Exons2
Cds size603
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186948.3985147-UTR-P-wetherbeei_contig6961:1406..15761683186948.3985147-UTR-P-wetherbeei_contig6961:1406..1576Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6961 1407..1576 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186948.4118392-CDS-P-wetherbeei_contig6961:1576..16441683186948.4118392-CDS-P-wetherbeei_contig6961:1576..1644Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6961 1577..1644 +
1683186948.422123-CDS-P-wetherbeei_contig6961:1768..23031683186948.422123-CDS-P-wetherbeei_contig6961:1768..2303Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6961 1769..2303 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6961.2.1prot_P-wetherbeei_contig6961.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6961 1577..2303 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6961.2.1

>prot_P-wetherbeei_contig6961.2.1 ID=prot_P-wetherbeei_contig6961.2.1|Name=mRNA_P-wetherbeei_contig6961.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=201bp
MIEDLDEEAWTERREGFIVRCNALAVQKLWSKNTCGVNEASVLLHSALAA
ASGAPDITPTIKTLRCATLLNLGWLAYAGGATQYHEALGWFTAAVEAGAQ
DPICLARAATNAGMVLLELGRGRQAASNFRRAISVLVDVRVNGEGAEADP
AADRDCDGESTRLEMHTALEVQTSFHLAQAELSQGRYDSALDVLEHALFV
A
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mRNA from alignment at P-wetherbeei_contig6961:1407..2303+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6961.2.1 ID=mRNA_P-wetherbeei_contig6961.2.1|Name=mRNA_P-wetherbeei_contig6961.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=897bp|location=Sequence derived from alignment at P-wetherbeei_contig6961:1407..2303+ (Phaeothamnion wetherbeei SAG_119_79)
GGAAAACCAAACATGGGAACGGCTAAACTTCACAAGCCATCTACTTGGCC
CAATTCGGACGATTAACTAGTAAGAAACCCTGGATAAGATCCAAATTCCA
ACCATCGAGTGCGGAATAAGCATCCAAGCCGTATTCAGGGCCAGATCCGC
CGCATAAGGCAGCGGGAGGAATGATTGAAGACCTCGACGAGGAAGCATGG
ACAGAGAGACGCGAAGGGTTCATCGTCCGCTGCAATGCGTGAGCCCGCCG
CCAAATGCAAGCTGCGCGCTTCATAAAACTTCCTGACCGCTGCACTGCGG
ATCAATCATTCATTCAATGTACCTAATTATCATAAGCCTGCTTCCCAGAC
CTCTTTCAACAGGTTGGCCGTCCAAAAGCTGTGGTCAAAGAACACTTGCG
GCGTCAATGAAGCCTCTGTGCTGCTCCACAGCGCACTTGCAGCCGCCAGT
GGGGCACCCGACATCACACCCACCATCAAGACCCTTCGCTGCGCGACGTT
GCTAAACCTGGGTTGGCTCGCTTACGCTGGTGGTGCAACGCAATATCACG
AGGCGTTGGGGTGGTTTACCGCGGCAGTGGAAGCGGGCGCGCAGGATCCG
ATTTGCTTGGCTCGCGCCGCAACCAATGCCGGCATGGTCTTGCTGGAGCT
CGGAAGGGGCAGGCAAGCCGCGTCGAACTTTCGTCGCGCCATCAGCGTAC
TGGTCGATGTCCGTGTAAATGGCGAGGGCGCAGAGGCGGATCCCGCTGCG
GATCGCGACTGCGACGGGGAGAGCACGCGCCTGGAGATGCACACGGCGCT
GGAGGTTCAAACGTCGTTTCACCTCGCCCAGGCAGAGCTCAGCCAGGGCC
GCTATGATTCGGCGTTGGACGTTCTGGAGCACGCATTGTTTGTGGCA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6961:1407..2303+

>mRNA_P-wetherbeei_contig6961.2.1 ID=mRNA_P-wetherbeei_contig6961.2.1|Name=mRNA_P-wetherbeei_contig6961.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=603bp|location=Sequence derived from alignment at P-wetherbeei_contig6961:1407..2303+ (Phaeothamnion wetherbeei SAG_119_79)
ATGATTGAAGACCTCGACGAGGAAGCATGGACAGAGAGACGCGAAGGGTT
CATCGTCCGCTGCAATGCGTTGGCCGTCCAAAAGCTGTGGTCAAAGAACA
CTTGCGGCGTCAATGAAGCCTCTGTGCTGCTCCACAGCGCACTTGCAGCC
GCCAGTGGGGCACCCGACATCACACCCACCATCAAGACCCTTCGCTGCGC
GACGTTGCTAAACCTGGGTTGGCTCGCTTACGCTGGTGGTGCAACGCAAT
ATCACGAGGCGTTGGGGTGGTTTACCGCGGCAGTGGAAGCGGGCGCGCAG
GATCCGATTTGCTTGGCTCGCGCCGCAACCAATGCCGGCATGGTCTTGCT
GGAGCTCGGAAGGGGCAGGCAAGCCGCGTCGAACTTTCGTCGCGCCATCA
GCGTACTGGTCGATGTCCGTGTAAATGGCGAGGGCGCAGAGGCGGATCCC
GCTGCGGATCGCGACTGCGACGGGGAGAGCACGCGCCTGGAGATGCACAC
GGCGCTGGAGGTTCAAACGTCGTTTCACCTCGCCCAGGCAGAGCTCAGCC
AGGGCCGCTATGATTCGGCGTTGGACGTTCTGGAGCACGCATTGTTTGTG
GCA
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