mRNA_P-wetherbeei_contig6956.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6956.1.1
Unique NamemRNA_P-wetherbeei_contig6956.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig6956.1.1 vs. uniprot
Match: A0A6H5K447_9PHAE (Protein-serine/threonine kinase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K447_9PHAE)

HSP 1 Score: 107 bits (266), Expect = 1.670e-23
Identity = 66/144 (45.83%), Postives = 87/144 (60.42%), Query Frame = 3
Query:    9 EVIRRLAKEHKGKVH---RLAPTALKMALEKKGVSR-----ALEG--DTALYDLVSHLACQRPVPLSLRQLYTFGKRPTAEGRLQNVRFLHRELPIRLSQRAEELMYLPHGLSAVAGIQQVATCYAHFALELFRVPKPETTEEN 410
            + + +LAK ++G +    R AP AL  ALE + ++      AL+   +  +Y  +  LA +    +SL+QLY  GK P    RL N +FLHRELP+RLSQRA ELM LPHGLS V G+QQV  CYA +A ELF  P P T +E 
Sbjct:   14 DAVVKLAKGYEGPIKARSRYAPQALIHALEGQPLNTVRGLGALDNSEEHIMYKAIQDLAKEEVTCMSLKQLYVNGKNPEPAHRLANAQFLHRELPVRLSQRAVELMNLPHGLSDVPGVQQVYNCYARYAWELFCAPLPTTPQEE 157          
BLAST of mRNA_P-wetherbeei_contig6956.1.1 vs. uniprot
Match: D8LL33_ECTSI (Protein-serine/threonine kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL33_ECTSI)

HSP 1 Score: 102 bits (255), Expect = 7.240e-22
Identity = 52/94 (55.32%), Postives = 62/94 (65.96%), Query Frame = 3
Query:  129 LYDLVSHLACQRPVPLSLRQLYTFGKRPTAEGRLQNVRFLHRELPIRLSQRAEELMYLPHGLSAVAGIQQVATCYAHFALELFRVPKPETTEEN 410
            +Y  +  LA +    +SL+QLY  GK P    RL N +FLHRELP+RLSQRA ELM LPHGLS V G+QQV  CYA +A ELF  P P T +E 
Sbjct:    1 MYKAIQDLAREEVTCMSLKQLYVNGKNPEPAHRLANAQFLHRELPVRLSQRAVELMNLPHGLSDVPGVQQVYNCYARYAWELFCAPLPTTPQEE 94          
BLAST of mRNA_P-wetherbeei_contig6956.1.1 vs. uniprot
Match: A0A1Z5JRL9_FISSO (Protein-serine/threonine kinase n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JRL9_FISSO)

HSP 1 Score: 88.6 bits (218), Expect = 5.260e-17
Identity = 42/89 (47.19%), Postives = 61/89 (68.54%), Query Frame = 3
Query:  150 LACQRPVPLSLRQLYTFGKRPTAEGRLQNVRFLHRELPIRLSQRAEELMYLPHGLSAVAGIQQVATCYAHFALELFRVPKPETTEENAA 416
            LA QRP PL L  +Y +G+    + RL+N +FLH+ELPIR++QRA +L+ LPHGLS    I++VA+ Y  + +EL + P P T E++ A
Sbjct:   78 LAAQRPTPLRLADMYKYGRGEDPKQRLRNAQFLHKELPIRIAQRAVDLLTLPHGLSTAEPIRRVASMYLEYMVELQKFPAPTTYEDDEA 166          
BLAST of mRNA_P-wetherbeei_contig6956.1.1 vs. uniprot
Match: A0A8J9TYW1_PHATR (Hypothetical protein (Fragment) n=1 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=A0A8J9TYW1_PHATR)

HSP 1 Score: 77.0 bits (188), Expect = 8.430e-15
Identity = 42/89 (47.19%), Postives = 55/89 (61.80%), Query Frame = 3
Query:  150 LACQRPVPLSLRQLYTFGKRPTAEGRLQNVRFLHRELPIRLSQRAEELMYLPHGLSAVAGIQQVATCYAHFALELFRVPKPE--TTEEN 410
            LA QRP PL L  +Y +G+      RL+N +FLHRELPIR++QRA +L+ LPHGLS    I+QVA  Y  +  +    P P+  T EE 
Sbjct:    7 LASQRPTPLRLADMYEYGRGIDPAQRLRNSQFLHRELPIRVAQRAYDLLTLPHGLSNATPIRQVAATYIQYLQQFKSRPCPQNKTQEEE 95          
BLAST of mRNA_P-wetherbeei_contig6956.1.1 vs. uniprot
Match: B7G6S3_PHATC (Protein-serine/threonine kinase (Fragment) n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7G6S3_PHATC)

HSP 1 Score: 76.6 bits (187), Expect = 5.590e-13
Identity = 39/87 (44.83%), Postives = 53/87 (60.92%), Query Frame = 3
Query:  150 LACQRPVPLSLRQLYTFGKRPTAEGRLQNVRFLHRELPIRLSQRAEELMYLPHGLSAVAGIQQVATCYAHFALELFRVPKPETTEEN 410
            LA QRP PL L  +Y +G+      RL+N +FLHRELPIR++QRA +L+ LPHGLS    I+QVA  Y  +  +    P P+   + 
Sbjct:    7 LASQRPTPLRLADMYEYGRGIDPAQRLRNSQFLHRELPIRVAQRAYDLLTLPHGLSNATPIRQVAATYIQYLQQFKSRPCPQNKPQE 93          
BLAST of mRNA_P-wetherbeei_contig6956.1.1 vs. uniprot
Match: A0A7S2XKB0_9STRA (Protein-serine/threonine kinase (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XKB0_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 1.300e-11
Identity = 38/100 (38.00%), Postives = 57/100 (57.00%), Query Frame = 3
Query:  111 LEGDTALYDLVSHLACQRPVPLSLRQLYTFGKRPTAEGRLQNVRFLHRELPIRLSQRAEELMYLPHGLSAVAGIQQVATCYAHFALELFRVPKPETTEEN 410
            L+G T   D +  LA  +  PLSL  ++ + K      RL+N +FLHRELPIR++QRA +L+ LPHGL+    +Q +A  Y  +  +    P+P T  + 
Sbjct:  102 LDGPTM--DELHQLASLKSTPLSLSNMFRYAKAEDVIQRLRNAQFLHRELPIRIAQRAVDLLTLPHGLNQTKDVQTIAQTYLKYIQKFREFPEPRTMAQE 199          
BLAST of mRNA_P-wetherbeei_contig6956.1.1 vs. uniprot
Match: A0A7S4DS34_9EUKA (Protein-serine/threonine kinase n=2 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S4DS34_9EUKA)

HSP 1 Score: 72.0 bits (175), Expect = 2.920e-11
Identity = 45/122 (36.89%), Postives = 69/122 (56.56%), Query Frame = 3
Query:   48 VHRLAPTA--LKMALEKKGVSRALEGDTALYDLVSHLACQRPVPLSLRQLYTFGKRPTAEGRLQNVRFLHRELPIRLSQRAEELMYLPHGLSAVAGIQQVATCYAHFALELFRVPKPETTEE 407
            + RL P A     A+ +K +S+ ++       ++  LA ++  P+SL+ LY +G+ P    RL + +FLHRE+PIR+SQR  EL  LP GLS   GI++V   Y  + L+L  +  P   EE
Sbjct:   26 LERLVPNASHASSAIRRKALSKNVD------TILGALATKKATPVSLKDLYRYGQDPAL--RLHHAQFLHREVPIRVSQRVMELRCLPFGLSESHGIKEVIDNYTSYTLDLLTMDPPCEEEE 139          
BLAST of mRNA_P-wetherbeei_contig6956.1.1 vs. uniprot
Match: A0A7S1UXM2_9STRA (Protein-serine/threonine kinase n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1UXM2_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 3.350e-11
Identity = 39/107 (36.45%), Postives = 62/107 (57.94%), Query Frame = 3
Query:   96 GVSRA--LEGDTALYDLVSHLACQRPVPLSLRQLYTFGKRPTAEGRLQNVRFLHRELPIRLSQRAEELMYLPHGLSAVAGIQQVATCYAHFALELFRVPKPETTEEN 410
            GV+ A  ++ D   +  ++ LA ++P PL L  +Y +        RL N +FLH+ELPIR++QRA +L+ LPHGL+    IQ VA  Y  +  ++ ++  P T +E 
Sbjct:  103 GVATANNVDVDNIDWKQLNDLAQRKPTPLRLVDMYKYATDRDPAQRLLNAQFLHKELPIRIAQRAVDLLTLPHGLNEAPSIQSVAHIYLEYMNKILKLDPPTTPQEE 209          
BLAST of mRNA_P-wetherbeei_contig6956.1.1 vs. uniprot
Match: A0A7S3P435_9STRA (Protein-serine/threonine kinase n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3P435_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 3.740e-10
Identity = 37/86 (43.02%), Postives = 50/86 (58.14%), Query Frame = 3
Query:  153 ACQRPVPLSLRQLYTFGKRPTAEGRLQNVRFLHRELPIRLSQRAEELMYLPHGLSAVAGIQQVATCYAHFALELFRVPKPETTEEN 410
            A ++P PL L  +Y +   P  + R+ N  FLH ELPIR++QRA +L+ LP GLS  A I+QVA  Y  +   L   P P+T  E 
Sbjct:  150 AQRKPTPLRLADMYKYAANP--DFRIPNAVFLHTELPIRIAQRAVDLLTLPFGLSEAAPIRQVACTYIRYLHTLLSTPVPKTVAEE 233          
BLAST of mRNA_P-wetherbeei_contig6956.1.1 vs. uniprot
Match: A0A7S0H3G8_9EUKA (Protein-serine/threonine kinase n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0H3G8_9EUKA)

HSP 1 Score: 64.7 bits (156), Expect = 9.510e-9
Identity = 35/90 (38.89%), Postives = 53/90 (58.89%), Query Frame = 3
Query:  138 LVSHLACQRPVPLSLRQLYTFGKRPTAEGRLQNVRFLHRELPIRLSQRAEELMYLPHGLSAVAGIQQVATCYAHFALELFRVPKPETTEE 407
            ++  LA ++  P+SLR LY  G+ P    RL + +FLHRE+PIR+SQR  EL  LP  LS   G+++V   Y  + L+L  +  P   ++
Sbjct:   40 ILGALATKKATPVSLRDLYRVGQDPRL--RLSHAQFLHREVPIRVSQRVMELRCLPFKLSESHGVREVIENYTSYVLDLLTMDPPSQDDD 127          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6956.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K447_9PHAE1.670e-2345.83Protein-serine/threonine kinase n=1 Tax=Ectocarpus... [more]
D8LL33_ECTSI7.240e-2255.32Protein-serine/threonine kinase n=1 Tax=Ectocarpus... [more]
A0A1Z5JRL9_FISSO5.260e-1747.19Protein-serine/threonine kinase n=2 Tax=Fistulifer... [more]
A0A8J9TYW1_PHATR8.430e-1547.19Hypothetical protein (Fragment) n=1 Tax=Phaeodacty... [more]
B7G6S3_PHATC5.590e-1344.83Protein-serine/threonine kinase (Fragment) n=1 Tax... [more]
A0A7S2XKB0_9STRA1.300e-1138.00Protein-serine/threonine kinase (Fragment) n=1 Tax... [more]
A0A7S4DS34_9EUKA2.920e-1136.89Protein-serine/threonine kinase n=2 Tax=Lotharella... [more]
A0A7S1UXM2_9STRA3.350e-1136.45Protein-serine/threonine kinase n=1 Tax=Grammatoph... [more]
A0A7S3P435_9STRA3.740e-1043.02Protein-serine/threonine kinase n=1 Tax=Amphora co... [more]
A0A7S0H3G8_9EUKA9.510e-938.89Protein-serine/threonine kinase n=1 Tax=Amorphochl... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6956contigP-wetherbeei_contig6956:644..1937 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LL33
PFAMsBCDHK_Adom3,HATPase_c
Model size611
Max annot lvl2759|Eukaryota
KEGG koko:K00898,ko:K08776,ko:K17915
Hectar predicted targeting categoryother localisation
Exons4
Evalue1.15e-22
EggNOG OGsCOG0642@1|root,KOG0787@2759|Eukaryota
EC2.7.11.2
Descriptionpyruvate dehydrogenase (acetyl-transferring) kinase activity
Cds size606
COG categoryT
BRITEko00000,ko01000,ko01001,ko01002,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186948.0471232-CDS-P-wetherbeei_contig6956:643..8471683186948.0471232-CDS-P-wetherbeei_contig6956:643..847Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6956 644..847 -
1683186948.060028-CDS-P-wetherbeei_contig6956:1108..11771683186948.060028-CDS-P-wetherbeei_contig6956:1108..1177Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6956 1109..1177 -
1683186948.06918-CDS-P-wetherbeei_contig6956:1419..16781683186948.06918-CDS-P-wetherbeei_contig6956:1419..1678Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6956 1420..1678 -
1683186948.0796044-CDS-P-wetherbeei_contig6956:1858..19321683186948.0796044-CDS-P-wetherbeei_contig6956:1858..1932Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6956 1859..1932 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186948.0903242-UTR-P-wetherbeei_contig6956:1932..19371683186948.0903242-UTR-P-wetherbeei_contig6956:1932..1937Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6956 1933..1937 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6956.1.1prot_P-wetherbeei_contig6956.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6956 644..1932 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6956.1.1

>prot_P-wetherbeei_contig6956.1.1 ID=prot_P-wetherbeei_contig6956.1.1|Name=mRNA_P-wetherbeei_contig6956.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=202bp
MEVIRRLAKEHKGKVHRLAPTALKMALEKKGVSRALEGDTALYDLVSHLA
CQRPVPLSLRQLYTFGKRPTAEGRLQNVRFLHRELPIRLSQRAEELMYLP
HGLSAVAGIQQVATCYAHFALELFRVPKPETTEENAAVPTAPACICHHHC
HHHHRHRCRIGAPSLPPPSPPPPPKSPSPLPPLPLQRAGACLHVPAGERD
PG
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mRNA from alignment at P-wetherbeei_contig6956:644..1937-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6956.1.1 ID=mRNA_P-wetherbeei_contig6956.1.1|Name=mRNA_P-wetherbeei_contig6956.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1294bp|location=Sequence derived from alignment at P-wetherbeei_contig6956:644..1937- (Phaeothamnion wetherbeei SAG_119_79)
CCACGATGGAGGTGATACGGCGATTAGCGAAGGAGCACAAGGGGAAAGTG CATAGGCTCGCTCCCACAGCACTCAAAATGTAATGATACTTTCTCATGAG AGCACTCATACGGTTTTCGGAGTCGTCAAAGCCTTTTGTCCGTTCCCCTG CTGCACCATGGAGACCTCACTTTTCGCTTTTCAAAAGTCTCTTCGACCGT TCTCTCTCCACATCTTTCCCTCATGCCTCTTCTTCCTCCCAAAAACCACG CCAAAAAAGGGCGCTCGAGAAGAAAGGCGTGAGCCGAGCGCTGGAGGGAG ACACCGCGCTCTATGACCTCGTCTCGCACCTCGCCTGCCAGCGGCCCGTG CCGCTCAGCCTGCGACAGCTCTACACCTTCGGCAAGCGGCCGACGGCGGA GGGACGCCTGCAGAACGTGCGGTTCCTGCACCGTGAGCTGCCGATCCGCC TCAGCCAGCGCGCCGAGGAGCTCATGTACCTGCCACACGGCCTCTCCGCC GTGGCGGGCATCCAGCAGGTAAGGGGGCGGTGATTCCGCTGGCCCGGCAA CCAAAAGGCGGTTTCTCCTTCCCTTTTTTCCCCTTTTTTCCCTTTTTTCC GCGTTTACTTCGCCCTTATCCCTTCAATTTGTTATGTCTCTGGGCCTCCT GCCGCTCAAAAATACTGCTTTCTGTTGCATGGTGCACTCTCATTTCCTCG TCTGGCCGCCTCCGTTCCTTCATGTGTCTTTCCTCCTCCCTTTTAACTGC GAACACGAAGGTGGCGACGTGCTATGCCCACTTCGCGCTGGAGCTCTTCC GCGTGCCCAAGCCCGAAACCACTGAAGAGGTGCGGGGCAGCTCGATCCGA AGCCGAAGGGAAGCCGAAACAGAAGCAGGAATAGAGAAAGCGTGCTGTGC TCGCTTCTCCTCTTTGTAGAAAGGCGTGGGGCGGCTGGTCGGTTTTGCTG GCGCCGGTGCATCCAGCATTTTGCCAACTCTCCTTTCACGTGCTTCTCAG TTCCTCTCAAAGTCTTCATCGTTGGGAACATACTGCTCCCTGAGCCTGCA GCCACCCCTGCCACCGCCGTCGTTGTTGTTGCTGTTGCAGAATGCTGCCG TCCCAACTGCTCCCGCCTGCATTTGCCACCACCACTGCCACCACCACCAC CGTCACCGCTGCCGCATCGGCGCCCCGTCGCTGCCACCGCCGTCACCCCC CCCACCGCCAAAATCGCCGTCACCTCTGCCGCCACTGCCGCTGCAACGAG CAGGAGCATGCCTACACGTGCCTGCTGGCGAACGTGATCCTGGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6956:644..1937-

>mRNA_P-wetherbeei_contig6956.1.1 ID=mRNA_P-wetherbeei_contig6956.1.1|Name=mRNA_P-wetherbeei_contig6956.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=606bp|location=Sequence derived from alignment at P-wetherbeei_contig6956:644..1937- (Phaeothamnion wetherbeei SAG_119_79)
ATGGAGGTGATACGGCGATTAGCGAAGGAGCACAAGGGGAAAGTGCATAG
GCTCGCTCCCACAGCACTCAAAATGGCGCTCGAGAAGAAAGGCGTGAGCC
GAGCGCTGGAGGGAGACACCGCGCTCTATGACCTCGTCTCGCACCTCGCC
TGCCAGCGGCCCGTGCCGCTCAGCCTGCGACAGCTCTACACCTTCGGCAA
GCGGCCGACGGCGGAGGGACGCCTGCAGAACGTGCGGTTCCTGCACCGTG
AGCTGCCGATCCGCCTCAGCCAGCGCGCCGAGGAGCTCATGTACCTGCCA
CACGGCCTCTCCGCCGTGGCGGGCATCCAGCAGGTGGCGACGTGCTATGC
CCACTTCGCGCTGGAGCTCTTCCGCGTGCCCAAGCCCGAAACCACTGAAG
AGAATGCTGCCGTCCCAACTGCTCCCGCCTGCATTTGCCACCACCACTGC
CACCACCACCACCGTCACCGCTGCCGCATCGGCGCCCCGTCGCTGCCACC
GCCGTCACCCCCCCCACCGCCAAAATCGCCGTCACCTCTGCCGCCACTGC
CGCTGCAACGAGCAGGAGCATGCCTACACGTGCCTGCTGGCGAACGTGAT
CCTGGA
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