mRNA_P-wetherbeei_contig6945.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6945.1.1
Unique NamemRNA_P-wetherbeei_contig6945.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig6945.1.1 vs. uniprot
Match: A0A4D9CPF1_9STRA (NAD(P)-bd_dom domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CPF1_9STRA)

HSP 1 Score: 216 bits (551), Expect = 4.040e-65
Identity = 127/235 (54.04%), Postives = 151/235 (64.26%), Query Frame = 1
Query:  289 KKILVFGATGKTGKRVVMALVGEGANVVAGVRSREKASAELGDAREGLQFLGVDVVCGKE--LAGAVRGCDAVVIATGFTPSFPPDPLGPLKVDYLGTRRVIDACVDAQVPKLVMISSLLTNGLAAGQGLNPNYLLLNAFGGVLLLKRKAEMYLENQAFLDWTIVRPGGLKNSPPVGNIVFASRDTLFSGAISREQVARVVVEAIVEPAASRKIVEIVARESAPYVGFAAGFESV 987
            K +LV GATGKTGKR+V  L+ +G  V AGVR   K    LG     L FL VDVV      LA  V    AV+ ATG++PS P D LGP KVD  GT ++ +A V A VPK+V++SSLLTNG AAGQGLN NY++LN FGGVL+ K  AE  +     LDWTIVRPGGL+ SPP G + +   DTLF G+ISR  VA V V A+   AASRKIVEIV+   AP + F  GF S 
Sbjct:   31 KGVLVVGATGKTGKRIVEVLLKKGRKVTAGVRDLAKGEEALGKPGNKLSFLEVDVVADSPTTLAEKVTDYSAVICATGYSPSGPIDLLGPYKVDNKGTTKLAEALVAAGVPKMVLVSSLLTNGWAAGQGLNKNYIILNLFGGVLVAKNTAERKIMATTGLDWTIVRPGGLRESPPEGRVKYGKADTLFGGSISRYSVAEVCVAALDSKAASRKIVEIVSEGDAPKLTFEQGFASA 265          
BLAST of mRNA_P-wetherbeei_contig6945.1.1 vs. uniprot
Match: A0A251VQE7_HELAN (Putative NAD(P)-binding Rossmann-fold superfamily protein n=1 Tax=Helianthus annuus TaxID=4232 RepID=A0A251VQE7_HELAN)

HSP 1 Score: 201 bits (510), Expect = 9.280e-59
Identity = 124/245 (50.61%), Postives = 158/245 (64.49%), Query Frame = 1
Query:  262 EPSEGRFDGKKILVFGATGKTGKRVVMALVGEGANVVAGVRSREKASAELGDAREGLQFLGVDVVCGKE-LAGAVRG-CDAVVIATGFTPSFPPDPLGPLKVDYLGTRRVIDACVDAQVPKLVMISSLLTNGLAAGQGLNPNYLLLNAFGGVLLLKRKAEMYLENQAFLDWTIVRPGGLKNSPPVGNIVFASRDTLFSGAISREQVARVVVEAIVEPAASRKIVEIVARESAPYVGFAAGFESVE 990
            E SE   + KKI V GATGKTGKR+V  L+ +G  V AGVR  +KA +   +  E LQF+  DV  G E LA A+    DAV+ ATGF  S+  D L P KVDY GT  ++DAC    V + +++SS+L NG A GQ LNP Y+ LNAFG VL+ K +AE Y+     +++TI+RPGGLKN PP GNIV    DTL  G+ISR+QVA V VE+++ P AS K+VEIVAR  AP   F   F S++
Sbjct:   39 EISEIEAEKKKIFVSGATGKTGKRIVEQLLAKGFAVKAGVRDADKAKSMFPNPIEDLQFVKSDVTEGSEKLADAIGDDSDAVICATGFQYSW--DLLAPWKVDYYGTVNLVDACRKVGVKRFILVSSILVNGAAMGQLLNPAYVFLNAFGLVLVAKLQAEQYIRKSG-INYTIIRPGGLKNDPPNGNIVMEPEDTLSDGSISRDQVAEVAVESLLHPQASYKVVEIVARTDAPKKSFIELFGSIK 280          
BLAST of mRNA_P-wetherbeei_contig6945.1.1 vs. uniprot
Match: A0A2J6KT57_LACSA (NAD(P)-bd_dom domain-containing protein n=2 Tax=Lactuca TaxID=4235 RepID=A0A2J6KT57_LACSA)

HSP 1 Score: 200 bits (508), Expect = 2.870e-58
Identity = 122/241 (50.62%), Postives = 155/241 (64.32%), Query Frame = 1
Query:  274 GRFDGKKILVFGATGKTGKRVVMALVGEGANVVAGVRSREKASAELGDAREGLQFLGVDVVCGKE-LAGAVRG-CDAVVIATGFTPSFPPDPLGPLKVDYLGTRRVIDACVDAQVPKLVMISSLLTNGLAAGQGLNPNYLLLNAFGGVLLLKRKAEMYLENQAFLDWTIVRPGGLKNSPPVGNIVFASRDTLFSGAISREQVARVVVEAIVEPAASRKIVEIVARESAPYVGFAAGFESVE 990
            G+   KKI V GATGKTGKR+V  L+ +G  V AGVR  EKA     +  + LQ +  DV  G E LA A+    DAVV ATGF  S+  D L P KVDY GT  +++AC    V K V++SS+L NG A GQ LNP Y+ LNAFG VL+ K +AE Y+     +++TI+RPGGLKN PP GN+V    DTL  G+ISR+QVA V VEA+++P +S K+VEIVAR  AP   F   F S++
Sbjct:   58 GKSGKKKIFVSGATGKTGKRIVEQLLAKGFAVKAGVRDAEKAKTIFPNLNQDLQIVKADVTEGSEKLAEAIGDDSDAVVCATGFQYSW--DLLAPWKVDYYGTVNLVEACRKLGVTKFVLVSSILVNGAAMGQLLNPAYVFLNAFGLVLVAKLQAEQYIRKSG-INYTIIRPGGLKNDPPNGNVVMEPEDTLSEGSISRDQVAEVAVEALLQPQSSYKVVEIVARTEAPKKSFEELFSSIK 295          
BLAST of mRNA_P-wetherbeei_contig6945.1.1 vs. uniprot
Match: UPI001CB93C71 (uncharacterized protein At2g34460, chloroplastic isoform X1 n=1 Tax=Erigeron canadensis TaxID=72917 RepID=UPI001CB93C71)

HSP 1 Score: 198 bits (504), Expect = 5.600e-58
Identity = 119/236 (50.42%), Postives = 150/236 (63.56%), Query Frame = 1
Query:  289 KKILVFGATGKTGKRVVMALVGEGANVVAGVRSREKASAELGDAREGLQFLGVDVVCGKELAGAVRGCD--AVVIATGFTPSFPPDPLGPLKVDYLGTRRVIDACVDAQVPKLVMISSLLTNGLAAGQGLNPNYLLLNAFGGVLLLKRKAEMYLENQAFLDWTIVRPGGLKNSPPVGNIVFASRDTLFSGAISREQVARVVVEAIVEPAASRKIVEIVARESAPYVGFAAGFESVE 990
            KKI V GATGKTGKR+V  L+ +G  V AG+R  +KA     +  E LQF+  DV  G E      G D  AV+ ATGF  S   D L P KVDY GT  ++DAC    V + + +SS+L NG A GQ LNP Y++LNAFG VL+ K +AE Y+     +++TIVRPGGLKN PP G+IV  S DTLF G+ISR+QVA V VEA++   +S K+VEIVAR  AP   F   F S++
Sbjct:   39 KKIFVAGATGKTGKRIVEQLLAKGFAVKAGMRDADKAKTIFANQTEDLQFVKADVTEGFEKLADAIGDDSVAVICATGFQYSL--DVLAPWKVDYYGTINLVDACRKVGVSRFIFVSSILVNGAAMGQLLNPAYIVLNAFGLVLMAKLQAEQYIRKSG-INYTIVRPGGLKNDPPNGSIVMESEDTLFEGSISRDQVAEVAVEALLHQQSSYKVVEIVARTDAPKKSFEDLFSSIQ 271          
BLAST of mRNA_P-wetherbeei_contig6945.1.1 vs. uniprot
Match: A0A2U1NQA9_ARTAN (NAD(P)-binding Rossmann-fold superfamily protein n=1 Tax=Artemisia annua TaxID=35608 RepID=A0A2U1NQA9_ARTAN)

HSP 1 Score: 198 bits (503), Expect = 1.510e-57
Identity = 119/236 (50.42%), Postives = 152/236 (64.41%), Query Frame = 1
Query:  289 KKILVFGATGKTGKRVVMALVGEGANVVAGVRSREKASAELGDAREGLQFLGVDVVCGKE-LAGAVRG-CDAVVIATGFTPSFPPDPLGPLKVDYLGTRRVIDACVDAQVPKLVMISSLLTNGLAAGQGLNPNYLLLNAFGGVLLLKRKAEMYLENQAFLDWTIVRPGGLKNSPPVGNIVFASRDTLFSGAISREQVARVVVEAIVEPAASRKIVEIVARESAPYVGFAAGFESVE 990
            KKI V GATGKTGKR+V  L+ +G  V AGVR  EKA     +  + LQ +  DV  G E LA A+    DAV+ ATGF  S   D L P KVDY GT  ++DAC    V + +++SS+L NG A GQ LNP Y++LNAFG VL+ K +AE Y+     +++TI+RPGGLKN PP GNIV    DTL  G+ISR+QVA V VE+++ P +S K+VEIVAR  AP   F   F S++
Sbjct:   61 KKIFVSGATGKTGKRIVEQLLAKGFAVKAGVRDAEKAKTMFKNQNQDLQIVNADVTEGPEKLANAIGDDSDAVICATGFQYSL--DVLAPWKVDYYGTVNLVDACRKVGVSRFILVSSILVNGAAMGQLLNPAYIVLNAFGLVLVAKLQAEQYIRKSG-INFTIIRPGGLKNDPPSGNIVMEPEDTLSEGSISRDQVAEVAVESLLCPQSSYKVVEIVARTEAPKTSFEELFGSIK 293          
BLAST of mRNA_P-wetherbeei_contig6945.1.1 vs. uniprot
Match: A9NWJ7_PICSI (NAD(P)-bd_dom domain-containing protein n=2 Tax=Picea sitchensis TaxID=3332 RepID=A9NWJ7_PICSI)

HSP 1 Score: 197 bits (501), Expect = 2.240e-57
Identity = 120/245 (48.98%), Postives = 156/245 (63.67%), Query Frame = 1
Query:  259 GEPSEGRFDGKKILVFGATGKTGKRVVMALVGEGANVVAGVRSREKASAELGDAREGLQFLGVDVVCGK-ELAGAVRGCDAVVIATGFTPSFPPDPLGPLKVDYLGTRRVIDACVDAQVPKLVMISSLLTNGLAAGQGLNPNYLLLNAFGGVLLLKRKAEMYLENQAFLDWTIVRPGGLKNSPPVGNIVFASRDTLFSGAISREQVARVVVEAIVEPAASRKIVEIVARESAPYVGFAAGFESVE 990
            GEP+E R   K + V GATG TGKR+V  L+ +G NV AGVR  + A          +QF+  DV  G  +L+ A+   +AV+ ATGF PS   D L P KVD  GT  ++DAC    V KL++ISS+L NG A GQ  NP Y++LN FG  L+ K +AE Y+     +D+TIVRPGGL+N PP GNIV  + DTLF G+ISR+QVA V VEA++ P AS K+VEIV+RE+AP       F S++
Sbjct:   46 GEPNEQRTT-KTVFVAGATGNTGKRIVTQLLSKGFNVKAGVRDVDSAKNNF-PTDTNIQFVKADVTEGAAKLSEAIGDAEAVICATGFRPSL--DFLAPWKVDNFGTVNLVDACRSIGVNKLILISSILVNGAAIGQLFNPAYIVLNVFGLTLVAKLQAEQYIRKSG-IDFTIVRPGGLRNDPPSGNIVMQAEDTLFEGSISRDQVAEVAVEALLYPEASYKVVEIVSRENAPKKSLQELFASIK 285          
BLAST of mRNA_P-wetherbeei_contig6945.1.1 vs. uniprot
Match: UPI001FB0A020 (uncharacterized protein At2g34460, chloroplastic n=1 Tax=Impatiens glandulifera TaxID=253017 RepID=UPI001FB0A020)

HSP 1 Score: 196 bits (499), Expect = 3.840e-57
Identity = 118/236 (50.00%), Postives = 155/236 (65.68%), Query Frame = 1
Query:  289 KKILVFGATGKTGKRVVMALVGEGANVVAGVRSREKASAELGDAREGLQFLGVDVVCGK-ELAGAV-RGCDAVVIATGFTPSFPPDPLGPLKVDYLGTRRVIDACVDAQVPKLVMISSLLTNGLAAGQGLNPNYLLLNAFGGVLLLKRKAEMYLENQAFLDWTIVRPGGLKNSPPVGNIVFASRDTLFSGAISREQVARVVVEAIVEPAASRKIVEIVARESAPYVGFAAGFESVE 990
            KKI V GATG+TGKR+V  L+ +G NV AGVR+ EKA      + + ++F+  DV  G  +LA A+    DAV+ ATGF PSF  D   P +VD  GT  ++DAC    + + ++ISS+L NG A GQ LNP Y+ LN FG  L+ K +AE Y+     +++TIVRPGGLKN PPVGNIV    DTLF+G+ISR+QVA V VEA++ P +S K+VEIVAR  AP   F   F S++
Sbjct:   47 KKIFVAGATGETGKRIVQQLLAKGFNVKAGVRNIEKAKTTFPQS-DFIEFVKADVTDGSTKLAEAIGNDSDAVICATGFRPSF--DLSAPWRVDNFGTVNLVDACGKQGIKRFILISSILVNGAAMGQVLNPAYIFLNVFGLTLVAKLQAEKYIRKSG-INYTIVRPGGLKNDPPVGNIVMEPEDTLFTGSISRDQVAEVAVEALILPESSYKVVEIVARTDAPNKPFHQLFGSIK 278          
BLAST of mRNA_P-wetherbeei_contig6945.1.1 vs. uniprot
Match: A0A2R6Q6P7_ACTCC (NAD(P)-bd_dom domain-containing protein n=2 Tax=Actinidia TaxID=3624 RepID=A0A2R6Q6P7_ACTCC)

HSP 1 Score: 196 bits (499), Expect = 5.460e-57
Identity = 117/236 (49.58%), Postives = 150/236 (63.56%), Query Frame = 1
Query:  289 KKILVFGATGKTGKRVVMALVGEGANVVAGVRSREKASAELGDAREGLQFLGVDVVCGK-ELAGAVRG-CDAVVIATGFTPSFPPDPLGPLKVDYLGTRRVIDACVDAQVPKLVMISSLLTNGLAAGQGLNPNYLLLNAFGGVLLLKRKAEMYLENQAFLDWTIVRPGGLKNSPPVGNIVFASRDTLFSGAISREQVARVVVEAIVEPAASRKIVEIVARESAPYVGFAAGFESVE 990
            KKI V GATG TGKR+V  L+ +G  V AGVR  +KA     D    LQF+  DV  G  +LA A+    DAV+ ATGF PS+  D L P KVD  GT  +++AC    V K ++ISS+L NG A GQ LNP Y+ LN FG  L+ K +AE ++     +++TI+RPGGLKN PP GNIV    DTL+ G+ISR+QVA V VEA++ P A+ K+VEIVAR  AP   F   F S++
Sbjct:   58 KKIFVAGATGNTGKRIVQQLLAKGFAVKAGVRDIDKAKTSFSDGNPDLQFVKADVTEGSTKLAEAIGADSDAVICATGFRPSW--DLLAPWKVDNFGTVNLVEACRKIGVNKFILISSILVNGAAMGQLLNPAYIFLNVFGLTLIAKLQAEQHMRKSG-INYTIIRPGGLKNDPPKGNIVMEPEDTLYEGSISRDQVAEVAVEALIHPEAAYKVVEIVARTEAPKRPFQELFGSIK 290          
BLAST of mRNA_P-wetherbeei_contig6945.1.1 vs. uniprot
Match: A0A022R0A2_ERYGU (NAD(P)-bd_dom domain-containing protein n=1 Tax=Erythranthe guttata TaxID=4155 RepID=A0A022R0A2_ERYGU)

HSP 1 Score: 196 bits (497), Expect = 1.020e-56
Identity = 119/247 (48.18%), Postives = 156/247 (63.16%), Query Frame = 1
Query:  256 IGEPSEGRFDGKKILVFGATGKTGKRVVMALVGEGANVVAGVRSREKASAELGDAREGLQFLGVDVVCGK-ELAGAVRG-CDAVVIATGFTPSFPPDPLGPLKVDYLGTRRVIDACVDAQVPKLVMISSLLTNGLAAGQGLNPNYLLLNAFGGVLLLKRKAEMYLENQAFLDWTIVRPGGLKNSPPVGNIVFASRDTLFSGAISREQVARVVVEAIVEPAASRKIVEIVARESAPYVGFAAGFESVE 990
            I E  EG    KKI V GATG TGKR+V  L+ +G  V AGVR  +KA +        LQF+  DV  G  +LA A+    DAV+ ATGF PS+  D L P KVD  GT  +++AC    V + +++SS+L NG A GQ LNP Y+ LN FG  L+ K +AE Y+     +D+TI+RPGGLKN PP+GNIV    DTL++G+ISR+QVA V VEA++ P +S K+VEIVAR  AP   F   F +++
Sbjct:   45 IEEEKEGSSVRKKIFVAGATGSTGKRIVEQLLAKGFAVKAGVRDVDKAKSTFPGNNPHLQFVKADVTEGSTKLADAISDDSDAVICATGFRPSW--DLLAPWKVDNYGTVNLVEACRKKNVNRFILVSSILVNGAAMGQLLNPAYIFLNVFGLTLVAKLQAEQYIRKSG-IDYTIIRPGGLKNDPPMGNIVMEPEDTLYAGSISRDQVAEVAVEALLLPESSYKVVEIVARTEAPKRSFDELFGTIK 288          
BLAST of mRNA_P-wetherbeei_contig6945.1.1 vs. uniprot
Match: W1PPH5_AMBTC (NAD(P)-bd_dom domain-containing protein n=1 Tax=Amborella trichopoda TaxID=13333 RepID=W1PPH5_AMBTC)

HSP 1 Score: 194 bits (494), Expect = 2.140e-56
Identity = 113/239 (47.28%), Postives = 153/239 (64.02%), Query Frame = 1
Query:  277 RFDGKKILVFGATGKTGKRVVMALVGEGANVVAGVRSREKASAELGDAREGLQFLGVDVVCGKE-LAGAVRGCDAVVIATGFTPSFPPDPLGPLKVDYLGTRRVIDACVDAQVPKLVMISSLLTNGLAAGQGLNPNYLLLNAFGGVLLLKRKAEMYLENQAFLDWTIVRPGGLKNSPPVGNIVFASRDTLFSGAISREQVARVVVEAIVEPAASRKIVEIVARESAPYVGFAAGFESVE 990
            + +GKK+ V GATG TGK++V  L+ +G  V AGVR  E A + L  + + +Q +  DV  G E LA A+   +AV+ ATGF PS   D   P KVD  GT  ++DAC    V + +++SS+L NG A GQ LNP Y++LN FG  L+ K +AE Y+ +   +++TI+RPGGL+N PP G+I   S DTLF G+ISREQVA V VEA+  P AS K+VEIV+R  AP   FA  F  ++
Sbjct:   44 KLEGKKVFVAGATGMTGKKIVDQLLSKGFQVRAGVRDVESAKSSL-SSNQNIQIVKADVTEGSEKLAEAIGDAEAVICATGFRPSL--DLFAPWKVDNFGTVNLVDACRTVGVNRFILVSSILVNGAAMGQILNPAYIVLNIFGLTLIAKLQAEKYIRSSG-INFTIIRPGGLRNDPPSGSIAMESEDTLFEGSISREQVAEVAVEALRHPEASYKVVEIVSRTEAPKHSFAEMFGHIK 278          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6945.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A4D9CPF1_9STRA4.040e-6554.04NAD(P)-bd_dom domain-containing protein n=2 Tax=Mo... [more]
A0A251VQE7_HELAN9.280e-5950.61Putative NAD(P)-binding Rossmann-fold superfamily ... [more]
A0A2J6KT57_LACSA2.870e-5850.62NAD(P)-bd_dom domain-containing protein n=2 Tax=La... [more]
UPI001CB93C715.600e-5850.42uncharacterized protein At2g34460, chloroplastic i... [more]
A0A2U1NQA9_ARTAN1.510e-5750.42NAD(P)-binding Rossmann-fold superfamily protein n... [more]
A9NWJ7_PICSI2.240e-5748.98NAD(P)-bd_dom domain-containing protein n=2 Tax=Pi... [more]
UPI001FB0A0203.840e-5750.00uncharacterized protein At2g34460, chloroplastic n... [more]
A0A2R6Q6P7_ACTCC5.460e-5749.58NAD(P)-bd_dom domain-containing protein n=2 Tax=Ac... [more]
A0A022R0A2_ERYGU1.020e-5648.18NAD(P)-bd_dom domain-containing protein n=1 Tax=Er... [more]
W1PPH5_AMBTC2.140e-5647.28NAD(P)-bd_dom domain-containing protein n=1 Tax=Am... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6945contigP-wetherbeei_contig6945:816..2585 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog13333.ERN09095
PFAMsNAD_binding_10
Model size1098
Max annot lvl35493|Streptophyta
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009526,GO:0009532,GO:0009534,GO:0009535,GO:0009536,GO:0009570,GO:0009579,GO:0009941,GO:0010287,GO:0016020,GO:0031967,GO:0031975,GO:0031976,GO:0031984,GO:0034357,GO:0042651,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0055035
Exons4
Evalue7.07e-49
EggNOG OGsCOG0702@1|root,KOG1203@2759|Eukaryota,37HE8@33090|Viridiplantae,3GAAU@35493|Streptophyta
Descriptionprotein At2g34460, chloroplastic-like
Cds size654
COG categoryG
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6945.1.1prot_P-wetherbeei_contig6945.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6945 1463..2480 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186947.6680803-UTR-P-wetherbeei_contig6945:815..8401683186947.6680803-UTR-P-wetherbeei_contig6945:815..840Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6945 816..840 +
1683186947.6774247-UTR-P-wetherbeei_contig6945:1148..14621683186947.6774247-UTR-P-wetherbeei_contig6945:1148..1462Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6945 1149..1462 +
1683186947.715529-UTR-P-wetherbeei_contig6945:2480..25851683186947.715529-UTR-P-wetherbeei_contig6945:2480..2585Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6945 2481..2585 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186947.6854-CDS-P-wetherbeei_contig6945:1462..17321683186947.6854-CDS-P-wetherbeei_contig6945:1462..1732Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6945 1463..1732 +
1683186947.6933951-CDS-P-wetherbeei_contig6945:1885..20291683186947.6933951-CDS-P-wetherbeei_contig6945:1885..2029Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6945 1886..2029 +
1683186947.7048328-CDS-P-wetherbeei_contig6945:2240..24801683186947.7048328-CDS-P-wetherbeei_contig6945:2240..2480Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6945 2241..2480 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6945.1.1

>prot_P-wetherbeei_contig6945.1.1 ID=prot_P-wetherbeei_contig6945.1.1|Name=mRNA_P-wetherbeei_contig6945.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=218bp
MALVGEGANVVAGVRSREKASAELGDAREGLQFLGVDVVCGKELAGAVRG
CDAVVIATGFTPSFPPDPLGPLKVDYLGTRRVIDACVDAQVPKLVMISSL
LTNGLAAGQGLNPNYLLLNAFGGVLLLKRKAEMYLENQAFLDWTIVRPGG
LKNSPPVGNIVFASRDTLFSGAISREQVARVVVEAIVEPAASRKIVEIVA
RESAPYVGFAAGFESVE*
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mRNA from alignment at P-wetherbeei_contig6945:816..2585+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6945.1.1 ID=mRNA_P-wetherbeei_contig6945.1.1|Name=mRNA_P-wetherbeei_contig6945.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1770bp|location=Sequence derived from alignment at P-wetherbeei_contig6945:816..2585+ (Phaeothamnion wetherbeei SAG_119_79)
AAGCTCCAGGATGCCGCCCCACACGGTACGTTGTGCTTGAATGTAGCCAC GCAATTTCTGAGGTTTTCGAGAAAACGGGAGGCTGTAGGGACCCGAGAAA AGAAAGCAAGAAGCCTTTCTCCCGTGTTTAAGATTGGTGATCGATGGTTG GTAAGAAGTGTAATCCGCAGACAACCAGGTTGCTCTTCCAAGTCACATTA CGACGACTAGAAGGAAACCGGCCTCCATTCGAAGCCTTTTCAAAGTTTCA AAGACTTTCTCCACGTTACCCACGATAAGGAGCATGCTACTGAAAGCTGA ACAGAAAGTTTCAATCCTTGCTGTGCTATGCAGGTGGAGCTGTTCAACAA AGGCCTCTGTATTCGTCGTCTGACGACTATTTGAACAACTTGCCACCGGC CTCAACGGGCGCGACCGGAGACTATCTCGACGAAATCGGCCGGCAGTCTG GCGAAGGAACTCCCCCGCCGGGCGCGGCGGAGAGCTACCTGACTGACCTT GACCGCAAGACGGCCGAAGCTGCCGAAGATGCGAAGGAGGTCGCAACGCC GGCAACAGAGCCAATCGGAGAGCCGTCGGAAGGACGTTTCGACGGGAAGA AGATATTGGTGTTCGGCGCAACCGGCAAGACCGGGAAGCGCGTCGTCATG GCCCTTGTCGGCGAAGGTGCCAACGTTGTCGCCGGAGTTCGGAGTCGTGA AAAGGCATCTGCGGAGCTTGGCGACGCCCGGGAGGGGCTCCAGTTCCTGG GAGTCGACGTGGTGTGCGGGAAGGAACTGGCGGGCGCGGTGCGGGGCTGC GATGCCGTCGTGATCGCCACGGGCTTCACGCCCAGCTTCCCGCCGGACCC GCTCGGGCCGCTCAAGGTGGACTACCTGGGGACGCGAAGAGTCATCGATG CCTGCGTCGATGCGCAGGTCCGTGGCGGTCGTGTTTGTGATCCAGTCCTG GTTTTTATTACTTAGTTGCTCTGTTGATTGGAGTCTGTTCGCATTGCTTT CGGTCGGATTTGATTCGAGTAACTTGTCGTCTTACGCACCTTCACCATTC TGCGGTCTTCCCACCTTCAGGTGCCGAAGCTCGTGATGATTTCGAGCCTG CTCACCAACGGGCTTGCGGCGGGCCAGGGCCTGAACCCAAACTACCTTCT CCTCAACGCTTTCGGCGGGGTGCTGCTGCTTAAGCGGAAGGCAGAAATGT ATTTGGAGAACCAGGTGAGAACACAGCTCATGAGCCGCAATCGCTTTCAA ATCTTTCCCGCTTCCTCACAGTGTGTTGTTTACTCAGTGTCGGATCGTGC GTTTTGGCTCTGTACCTTCTGCGGAAAAGGCGGTTGTATGCCATGATGTG GTGGCTGTCGCCTCTCCAGTCAAATGGTTTGTACTCTCTTTGCTTCATTT TCTCCGGACCCTTTTCCAACGCCAGGCCTTTTTGGACTGGACGATCGTCC GACCCGGCGGGCTAAAAAATAGTCCGCCGGTGGGCAACATTGTGTTTGCG TCGCGGGATACGCTCTTCTCTGGAGCGATTTCGCGGGAGCAAGTGGCACG GGTGGTGGTGGAGGCCATCGTGGAGCCTGCGGCGTCGCGAAAGATTGTCG AAATCGTTGCTCGAGAGTCGGCGCCGTACGTCGGCTTTGCGGCAGGGTTC GAATCAGTCGAATGAAGGAGGAGAGCACACAGGCACACAGAAAGGTGAAG AGAGGCAGATAGCTGGACAACACAAAATGAGGGCGTTACGCTCTCGGTAG TAAACAAACTGTATTTCTTC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6945:816..2585+

>mRNA_P-wetherbeei_contig6945.1.1 ID=mRNA_P-wetherbeei_contig6945.1.1|Name=mRNA_P-wetherbeei_contig6945.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=654bp|location=Sequence derived from alignment at P-wetherbeei_contig6945:816..2585+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCCCTTGTCGGCGAAGGTGCCAACGTTGTCGCCGGAGTTCGGAGTCG
TGAAAAGGCATCTGCGGAGCTTGGCGACGCCCGGGAGGGGCTCCAGTTCC
TGGGAGTCGACGTGGTGTGCGGGAAGGAACTGGCGGGCGCGGTGCGGGGC
TGCGATGCCGTCGTGATCGCCACGGGCTTCACGCCCAGCTTCCCGCCGGA
CCCGCTCGGGCCGCTCAAGGTGGACTACCTGGGGACGCGAAGAGTCATCG
ATGCCTGCGTCGATGCGCAGGTGCCGAAGCTCGTGATGATTTCGAGCCTG
CTCACCAACGGGCTTGCGGCGGGCCAGGGCCTGAACCCAAACTACCTTCT
CCTCAACGCTTTCGGCGGGGTGCTGCTGCTTAAGCGGAAGGCAGAAATGT
ATTTGGAGAACCAGGCCTTTTTGGACTGGACGATCGTCCGACCCGGCGGG
CTAAAAAATAGTCCGCCGGTGGGCAACATTGTGTTTGCGTCGCGGGATAC
GCTCTTCTCTGGAGCGATTTCGCGGGAGCAAGTGGCACGGGTGGTGGTGG
AGGCCATCGTGGAGCCTGCGGCGTCGCGAAAGATTGTCGAAATCGTTGCT
CGAGAGTCGGCGCCGTACGTCGGCTTTGCGGCAGGGTTCGAATCAGTCGA
ATGA
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