mRNA_P-wetherbeei_contig6944.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6944.1.1
Unique NamemRNA_P-wetherbeei_contig6944.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig6944.1.1 vs. uniprot
Match: A0A4D9D447_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D447_9STRA)

HSP 1 Score: 103 bits (258), Expect = 1.830e-20
Identity = 90/242 (37.19%), Postives = 111/242 (45.87%), Query Frame = 1 
Query:  904 LAVPRTCAAAAVDRFGCGLIVGGWDGARPLAAVER-------CRRRXXXXXPLAAMD---AASAATGAPPALAALELVWEQLPPLREARCFPAAAFDTAGRAYALGGGGGPLVGASVMASIEVLARDDAHGLGSCSSSGRRACSSGGACCGSLAGDDASLAWRPGPPMLEPRCGLAAAVCPASGLIYAVGGFGGGRNYLSSAEVLNP-----ATERWTP--APSMAHRRTGFGLAWGPDGGL 1578
            L + R+    A D+     +VGGW G+  L +VER        +        +A  D     S+ +G P      E +W  L PL  ARCF A+  D  GR YALGGG     GA V+ S E++    A                             ++ WRPGP M++ RCGLAAA   A G IYAVGG+GGG  YLSS EVL       AT  W       M   RTGFGLA+GPDG L
Sbjct:   32 LQMERSAPGVARDQEDGLWVVGGWSGSEALKSVERLGVDSRTAQEGGMREHRVAKEDLVTGGSSWSGMP----RRERMWTSLQPLETARCFLASVTDLQGRLYALGGGESIWQGARVLKSTEIMEEPLAR---------------------------LTMPWRPGPCMVKARCGLAAAASIA-GDIYAVGGYGGGTTYLSSVEVLRAGDSEGATREWLVDVVRPMHVARTGFGLAFGPDGCL 241
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BLAST of mRNA_P-wetherbeei_contig6944.1.1 vs. uniprot
Match: W7T4D3_9STRA (Kelch-like protein diablo n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T4D3_9STRA)

HSP 1 Score: 102 bits (253), Expect = 3.690e-19
Identity = 88/242 (36.36%), Postives = 110/242 (45.45%), Query Frame = 1 
Query:  904 LAVPRTCAAAAVDRFGCGLIVGGWDGARPLAAVER-------CRRRXXXXXPLAAMD---AASAATGAPPALAALELVWEQLPPLREARCFPAAAFDTAGRAYALGGGGGPLVGASVMASIEVLARDDAHGLGSCSSSGRRACSSGGACCGSLAGDDASLAWRPGPPMLEPRCGLAAAVCPASGLIYAVGGFGGGRNYLSSAEVLNP-----ATERWTP--APSMAHRRTGFGLAWGPDGGL 1578
            L + R+    A D+     +VGGW G+  L +VER        +        +A  D     S+ +G P      E +W  L PL  ARCF A+  D  GR YALGGG     GA V+ S E++    A                             ++ WRPGP M++ RCGLAAA    +G IYA GG+GGG  YLSS EVL       AT  W       M   RTGFGLA+GPDG L
Sbjct:  169 LQMERSAPGVARDQEDGLWVVGGWSGSEALKSVERLGVDPRTAQEGGMREHRVAKEDLVTGGSSWSGMP----RRERMWTSLQPLETARCFLASVTDLQGRLYALGGGESIWQGARVLKSTEIMEEPLAR---------------------------LTMPWRPGPCMVKARCGLAAAAS-ITGDIYAAGGYGGGTTYLSSVEVLRAGDSEGATREWLVDVVRPMHVARTGFGLAFGPDGCL 378
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BLAST of mRNA_P-wetherbeei_contig6944.1.1 vs. uniprot
Match: A0A8J6CH67_DIALT (F-box domain-containing protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6CH67_DIALT)

HSP 1 Score: 77.8 bits (190), Expect = 2.130e-11
Identity = 69/225 (30.67%), Postives = 91/225 (40.44%), Query Frame = 1 
Query:  928 AAAVDRFGCGLIVGGWD------GARPLAAVERCRRRXXXXXPLAAMDAASAATGAPPALAALELVWEQL-PPLREARCFPAAAFDTAGRAYALGGGGGPLVGASVMASIEVLARDDAHGLGSCSSSGRRACSSGGACCGSLAGDDASLAWRPGPPMLEPRCGLAAAVCPASGLIYAVGGFGGGRNYLSSAEVL---NPATERWTPAPSMAHRRTGFGLAWGPDG 1572
            AA  D  G    +GGW        + P A++  C+           ++A +A  G           W  L   + E R FP AA       +A+GGG  P  GA   AS E+   D A                                WRPGPPML  RCGLA       G++YA+GG+GGGR Y SS E+L   +     W  +P M+  R+G   + GPDG
Sbjct:  135 AATTDCAGTVYALGGWVLRDHALNSLPSASLRSCQT----------LEATAAPAG-----------WRSLGAQMAEKRAFPGAACVDGFNIFAVGGGTSPWWGARCHASTELYVPDAA-------------------------------VWRPGPPMLAARCGLAVVHDAPRGVLYALGGYGGGREYNSSVEMLPLGSAGGRGWLASPPMSAPRSGLSASLGPDG 307
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6944.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A4D9D447_9STRA1.830e-2037.19Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
W7T4D3_9STRA3.690e-1936.36Kelch-like protein diablo n=1 Tax=Nannochloropsis ... [more]
A0A8J6CH67_DIALT2.130e-1130.67F-box domain-containing protein n=1 Tax=Diacronema... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6944contigP-wetherbeei_contig6944:883..2905 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2903.EOD24521
Preferred nameKLHL34
PFAMsBACK,BTB,F-box,Kelch_1
Model size2023
Max annot lvl2759|Eukaryota
KEGG koko:K10469,ko:K19720
KEGG Pathwayko04611,ko04926,ko04933,ko04974,ko05146,map04611,map04926,map04933,map04974,map05146
Hectar predicted targeting categorymitochondrion
Exons1
Evalue1.22e-11
EggNOG OGsKOG4441@1|root,KOG4441@2759|Eukaryota
Descriptionprotein ubiquitination
Cds size1692
COG categoryKLT
BRITEko00000,ko00001,ko00536,ko04121
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186947.62698-UTR-P-wetherbeei_contig6944:882..8951683186947.62698-UTR-P-wetherbeei_contig6944:882..895Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6944 883..895 -
1683186947.6445775-UTR-P-wetherbeei_contig6944:2587..29051683186947.6445775-UTR-P-wetherbeei_contig6944:2587..2905Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6944 2588..2905 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186947.6365402-CDS-P-wetherbeei_contig6944:895..25871683186947.6365402-CDS-P-wetherbeei_contig6944:895..2587Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6944 896..2587 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6944.1.1prot_P-wetherbeei_contig6944.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6944 896..2587 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6944.1.1

>prot_P-wetherbeei_contig6944.1.1 ID=prot_P-wetherbeei_contig6944.1.1|Name=mRNA_P-wetherbeei_contig6944.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=564bp
MASRPRTFPAAARRPLRRLDDLHAEVAERLFSFLNSEALASLETASAVWC
SRILEVRCWERFVAPRGGAFCLLQPQPDHASFGTPVCAQRYWKSFLAAMA
SGNSTAAAGKRTEVATTAAAIPRPASPSTAEATPDKPRPAMRNTSAGRIY
AFGGQDEPDEEDERATGAVRSLADVGGEGDSGIGSGGLSWRRETPLAVPR
TCAAAAVDRFGCGLIVGGWDGARPLAAVERCRRRRRRRHPLAAMDAASAA
TGAPPALAALELVWEQLPPLREARCFPAAAFDTAGRAYALGGGGGPLVGA
SVMASIEVLARDDAHGLGSCSSSGRRACSSGGACCGSLAGDDASLAWRPG
PPMLEPRCGLAAAVCPASGLIYAVGGFGGGRNYLSSAEVLNPATERWTPA
PSMAHRRTGFGLAWGPDGGLYAAGGSPNGSSALTALERLDPREGRWQGRA
PSLLARAYCAAAFATSGQLYLLGGGSLGTGLLKSIEVYCPRADRWRLLFN
GLPGVEAADEAQAADGGVAAATDILTTEEREAAPAAAGSPLGEANSQTGV
LGDMSVAFLWGCE*
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mRNA from alignment at P-wetherbeei_contig6944:883..2905-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6944.1.1 ID=mRNA_P-wetherbeei_contig6944.1.1|Name=mRNA_P-wetherbeei_contig6944.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2023bp|location=Sequence derived from alignment at P-wetherbeei_contig6944:883..2905- (Phaeothamnion wetherbeei SAG_119_79)
CTTGAACACCACGGCCATCCTCCACGACCTCTCGTACTAGATTGGCCAGT
AGCAGTGTCGCGAGCATCGACATGCGCAAGGTAGAAGGGTAAATCAGAGC
CCTAGAAGCCTGAGATCACGTCTCCTTTAACTTCTCGTAGATCGTTCGTG
TGCAACGTGTCTCATTTTCCGCTTCACCGCTCCCTGTCGGTTGCCTTTTG
GCAAAGTCGGTGGGACATTGGACTTCCTTTTCGCCGATTACCTTGCTCAG
TCCAACCTCTGCTCACCACTTTTCCCCCTTCTCAGCCGTTTGATGCCGAC
AGAGCGGGCACGAGAGCAATGGCTTCGCGGCCGCGCACGTTCCCGGCCGC
GGCGCGACGGCCGCTGCGTCGCCTGGACGATCTCCACGCGGAGGTCGCCG
AGCGCCTGTTCAGCTTCCTCAACTCGGAGGCGCTGGCGTCGCTGGAGACC
GCGTCGGCGGTGTGGTGCAGTAGAATTTTGGAGGTGCGCTGCTGGGAGCG
CTTCGTCGCACCGCGGGGGGGCGCATTCTGCCTGCTGCAGCCGCAGCCCG
ATCATGCATCGTTCGGTACGCCTGTGTGCGCCCAACGTTACTGGAAAAGT
TTCCTCGCAGCCATGGCGTCGGGAAATTCGACAGCGGCGGCAGGGAAACG
GACCGAAGTGGCAACGACAGCGGCGGCGATACCCAGGCCTGCCAGTCCTT
CAACTGCAGAAGCGACACCTGATAAGCCGCGGCCGGCGATGAGAAATACG
TCGGCCGGCAGGATCTACGCGTTCGGAGGGCAAGACGAACCAGACGAGGA
GGATGAGCGAGCCACCGGCGCCGTCCGGAGTCTTGCTGATGTTGGCGGCG
AAGGCGACAGTGGCATTGGCAGCGGCGGCCTCTCCTGGCGGCGGGAAACG
CCGCTCGCCGTGCCGAGAACGTGTGCGGCCGCTGCGGTTGACCGCTTTGG
CTGCGGCCTCATCGTCGGCGGCTGGGACGGCGCACGGCCACTGGCGGCGG
TCGAGCGCTGCCGCCGCCGCCGCCGCCGTCGCCACCCGCTGGCCGCTATG
GATGCGGCGTCGGCAGCAACGGGAGCGCCGCCGGCGCTGGCGGCGTTGGA
GCTCGTCTGGGAGCAGCTGCCGCCGCTGAGGGAGGCCCGGTGCTTTCCCG
CCGCAGCATTCGACACCGCCGGGCGGGCGTACGCGCTCGGAGGTGGCGGG
GGACCCCTCGTCGGAGCGTCCGTCATGGCATCTATCGAGGTTTTGGCGCG
CGACGACGCTCACGGCTTGGGCAGTTGCAGCAGTTCTGGCCGTCGTGCTT
GCAGCAGCGGCGGTGCGTGCTGCGGGAGCCTTGCTGGCGACGATGCAAGC
CTGGCCTGGCGGCCCGGCCCGCCGATGCTGGAGCCGCGGTGCGGGCTGGC
GGCCGCCGTCTGCCCCGCCAGCGGCCTCATTTACGCTGTTGGTGGCTTCG
GCGGTGGGCGCAATTACCTGTCCTCCGCGGAGGTGCTAAACCCGGCAACG
GAGCGGTGGACGCCGGCACCGTCCATGGCGCACCGCCGCACCGGGTTTGG
CTTGGCATGGGGTCCGGATGGTGGCCTTTACGCAGCCGGGGGGTCCCCGA
ACGGCTCCAGTGCGCTGACGGCGCTGGAACGCCTCGACCCGCGCGAGGGC
CGCTGGCAGGGCCGCGCGCCATCGCTTCTCGCGCGCGCGTACTGCGCCGC
CGCGTTCGCTACCTCGGGGCAGCTCTATTTGCTCGGCGGCGGCAGCCTCG
GAACGGGCCTGCTCAAGTCCATCGAGGTCTACTGCCCGCGCGCGGACCGC
TGGCGGCTGCTCTTCAACGGTCTTCCCGGCGTCGAGGCGGCAGACGAGGC
GCAGGCAGCCGATGGCGGCGTCGCTGCTGCTACTGACATTTTGACGACCG
AGGAACGTGAGGCTGCACCAGCCGCCGCCGGCTCCCCGCTCGGGGAAGCG
AACTCGCAGACTGGCGTGCTCGGCGACATGAGCGTCGCTTTTCTGTGGGG
CTGTGAGTAAATAAAAAAGGAAC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6944:883..2905-

>mRNA_P-wetherbeei_contig6944.1.1 ID=mRNA_P-wetherbeei_contig6944.1.1|Name=mRNA_P-wetherbeei_contig6944.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1692bp|location=Sequence derived from alignment at P-wetherbeei_contig6944:883..2905- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCTTCGCGGCCGCGCACGTTCCCGGCCGCGGCGCGACGGCCGCTGCG
TCGCCTGGACGATCTCCACGCGGAGGTCGCCGAGCGCCTGTTCAGCTTCC
TCAACTCGGAGGCGCTGGCGTCGCTGGAGACCGCGTCGGCGGTGTGGTGC
AGTAGAATTTTGGAGGTGCGCTGCTGGGAGCGCTTCGTCGCACCGCGGGG
GGGCGCATTCTGCCTGCTGCAGCCGCAGCCCGATCATGCATCGTTCGGTA
CGCCTGTGTGCGCCCAACGTTACTGGAAAAGTTTCCTCGCAGCCATGGCG
TCGGGAAATTCGACAGCGGCGGCAGGGAAACGGACCGAAGTGGCAACGAC
AGCGGCGGCGATACCCAGGCCTGCCAGTCCTTCAACTGCAGAAGCGACAC
CTGATAAGCCGCGGCCGGCGATGAGAAATACGTCGGCCGGCAGGATCTAC
GCGTTCGGAGGGCAAGACGAACCAGACGAGGAGGATGAGCGAGCCACCGG
CGCCGTCCGGAGTCTTGCTGATGTTGGCGGCGAAGGCGACAGTGGCATTG
GCAGCGGCGGCCTCTCCTGGCGGCGGGAAACGCCGCTCGCCGTGCCGAGA
ACGTGTGCGGCCGCTGCGGTTGACCGCTTTGGCTGCGGCCTCATCGTCGG
CGGCTGGGACGGCGCACGGCCACTGGCGGCGGTCGAGCGCTGCCGCCGCC
GCCGCCGCCGTCGCCACCCGCTGGCCGCTATGGATGCGGCGTCGGCAGCA
ACGGGAGCGCCGCCGGCGCTGGCGGCGTTGGAGCTCGTCTGGGAGCAGCT
GCCGCCGCTGAGGGAGGCCCGGTGCTTTCCCGCCGCAGCATTCGACACCG
CCGGGCGGGCGTACGCGCTCGGAGGTGGCGGGGGACCCCTCGTCGGAGCG
TCCGTCATGGCATCTATCGAGGTTTTGGCGCGCGACGACGCTCACGGCTT
GGGCAGTTGCAGCAGTTCTGGCCGTCGTGCTTGCAGCAGCGGCGGTGCGT
GCTGCGGGAGCCTTGCTGGCGACGATGCAAGCCTGGCCTGGCGGCCCGGC
CCGCCGATGCTGGAGCCGCGGTGCGGGCTGGCGGCCGCCGTCTGCCCCGC
CAGCGGCCTCATTTACGCTGTTGGTGGCTTCGGCGGTGGGCGCAATTACC
TGTCCTCCGCGGAGGTGCTAAACCCGGCAACGGAGCGGTGGACGCCGGCA
CCGTCCATGGCGCACCGCCGCACCGGGTTTGGCTTGGCATGGGGTCCGGA
TGGTGGCCTTTACGCAGCCGGGGGGTCCCCGAACGGCTCCAGTGCGCTGA
CGGCGCTGGAACGCCTCGACCCGCGCGAGGGCCGCTGGCAGGGCCGCGCG
CCATCGCTTCTCGCGCGCGCGTACTGCGCCGCCGCGTTCGCTACCTCGGG
GCAGCTCTATTTGCTCGGCGGCGGCAGCCTCGGAACGGGCCTGCTCAAGT
CCATCGAGGTCTACTGCCCGCGCGCGGACCGCTGGCGGCTGCTCTTCAAC
GGTCTTCCCGGCGTCGAGGCGGCAGACGAGGCGCAGGCAGCCGATGGCGG
CGTCGCTGCTGCTACTGACATTTTGACGACCGAGGAACGTGAGGCTGCAC
CAGCCGCCGCCGGCTCCCCGCTCGGGGAAGCGAACTCGCAGACTGGCGTG
CTCGGCGACATGAGCGTCGCTTTTCTGTGGGGCTGTGAGTAA
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