mRNA_P-wetherbeei_contig6912.1.2 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6912.1.2
Unique NamemRNA_P-wetherbeei_contig6912.1.2
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig6912.1.2 vs. uniprot
Match: A0A6H5L6Y2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6Y2_9PHAE)

HSP 1 Score: 162 bits (409), Expect = 1.640e-39
Identity = 96/227 (42.29%), Postives = 137/227 (60.35%), Query Frame = 1 
Query:  496 GPPPSYDALLASGKIATPDAKRAAARAAISWLRRATNGNGL-----GVDGTSDTPEFRALWRAHAPTILSLVR--GAAPAGVTTGDAELHQMFTEGLMYTLSAKGIVKAVASGDAGAYLAANRVLLRDFPNHDGGVGYIFQGGFFLAAPWPLRNVDAAQAQFEKALAVSPGSRRNAFYVGIAQFTAGRFDDAAASFRRAL---ELQPASDTEADIADWLEREGRKGL 1146
            GPPP+        K +     R+AA A +SW+R +T GNGL     G   TSDT E R LW  HAP +L LV+  G  P+     D EL Q+FTE +MY+++ +G+V+A+ SG A A+ +A  VL++ +P  D GV +IFQG ++LAAPWPLR+   A+  +EKA+ V+  SRRN +Y G+ +   G    AA  FRRA+   + + AS TE D+A  L  + ++GL
Sbjct:  277 GPPPT--------KASVATLSRSAAGALLSWIRCSTAGNGLIVADGGKAATSDTVERRELWGKHAPRVLQLVKESGEEPSS----DPELQQIFTEAVMYSVATQGVVEAIVSGKALAFTSAMNVLVKKYPTQDNGVAFIFQGSYYLAAPWPLRSPTKARDSYEKAVNVNGRSRRNVYYAGLGRLACGDKRGAAEMFRRAVSDDQCENASPTERDVAVSLREQAQRGL 491
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BLAST of mRNA_P-wetherbeei_contig6912.1.2 vs. uniprot
Match: A0A836CID7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CID7_9STRA)

HSP 1 Score: 128 bits (322), Expect = 5.840e-30
Identity = 64/132 (48.48%), Postives = 89/132 (67.42%), Query Frame = 1 
Query:  580 ISWLRRATNGNGLGVD-GTSDTPEFRALWRAHAPTILSLVRGAAPAGVTTGDAELHQMFTEGLMYTLSAKGIVKAVASGDAGAYLAANRVLLRDFPNHDGGVGYIFQGGFFLAAPWPLRNVDAAQAQFEKAL 972
            +SWLR  T+GNGL  D  T D+P +RA+W  HAP IL L+  +A A V   D ++ Q +TE +MY  S+KGI+  +ASG+A A+L A  +L+  +P  D GV +IFQG ++LAAPWP+++   A A FEKAL
Sbjct:  112 LSWLRAKTDGNGLRHDCSTVDSPPYRAIWAEHAPKILELLPQSAAAAV---DGDMAQAYTEAIMYKTSSKGIISGIASGNAFAFLNAVEMLVSQYPQQDNGVAFIFQGAYYLAAPWPVKSAKKAVAAFEKAL 240
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BLAST of mRNA_P-wetherbeei_contig6912.1.2 vs. uniprot
Match: A0A1Q9DS85_SYMMI (Uncharacterized protein n=2 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A1Q9DS85_SYMMI)

HSP 1 Score: 89.4 bits (220), Expect = 5.660e-16
Identity = 54/186 (29.03%), Postives = 95/186 (51.08%), Query Frame = 1 
Query:  589 LRRATNGNGLGVDGTSDTPEFRALWRAHAPTILSLVRGAAPAGVTTGDAELHQMFTEGLMYTLSAKGIVKAVASGDAGAYLAANRVLLRDFPNHDGGVGYIFQGGFFLAAPWPLRNVDAAQAQFEKALAVSPGSRRNAFYVGIAQFTAGRFDDAAASFRRALELQPASDTEADIADWLEREGRKGL 1146
            +R  TNGN L + GT D+     +W+   P        A  A     + +   ++ +   Y  SA GI++   +G    +L   + +    P+ +GG+G+IF+G F++AAPWPLR++  A     +ALA     +RN +YVG+A +    +++A   F ++ + +P   +E D A  L +E + G+
Sbjct:   87 MRIKTNGNMLLISGTQDSQSNIKVWKEVGPEAWDNANRALAA--LPKNPQAASVYADAFQYMSSAHGILRQALTGGGREFLRNAQRMQAVGPDEEGGLGFIFEGCFYIAAPWPLRDLKRALGLMRRALAQKK-CKRNYYYVGLANYHLQNYEEAIDYFAKSADAKPEFLSEFDFAAGLTQEAQHGI 269
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BLAST of mRNA_P-wetherbeei_contig6912.1.2 vs. uniprot
Match: A0A534Q7I9_9DELT (Uncharacterized protein n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A534Q7I9_9DELT)

HSP 1 Score: 89.0 bits (219), Expect = 6.010e-16
Identity = 68/199 (34.17%), Postives = 98/199 (49.25%), Query Frame = 1 
Query:  565 AARAAISWLRRATNGNGLGVDGTSDTPEFRALWRAHAPTILSLVRGAAPAGVTTGDAELHQMFTEGLMYTLSAKGIVKAVASGDAGAYLAANRVLLRDFPNHDGGVGYIFQGGFFLAAPWPLRNVDAAQAQFEKALAVSPGSRRNAFYVGIAQFTAGRFDDAAAS--FRRALELQ-PASDTEADIADWLEREGRKGLAE 1152
            AA+A    +   TNGN   VDG  DT   RALW       L   R A    ++   A    +     M+  S+ GI++++  G    Y A  + L+   PN+D  +G      F+L APWP+ + DAA AQFE+A  ++PGS RN +  G+A F A   D A A   F RA+ +   A  TE  + DW++   +  LA+
Sbjct:   72 AAQALTQLMAVRTNGNLPLVDGLQDTDANRALWADLGQRALEHARAAEK--LSPQHAGAAALVASSYMFYASSLGIIRSILQGAGNEYKAHAQRLIDLDPNYDDALGASLLANFYLVAPWPVHDRDAALAQFERAAKLAPGSVRNQY--GLAVFWARDGDAARARSYFERAVSMPCNARTTERLLCDWIKATAKGELAK 266
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BLAST of mRNA_P-wetherbeei_contig6912.1.2 vs. uniprot
Match: A0A7S2HMX9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HMX9_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 6.510e-12
Identity = 45/119 (37.82%), Postives = 70/119 (58.82%), Query Frame = 1 
Query:  814 DAGAYLAANRVLLRDFPNHDGGVGYIFQGGFFLAAPWPLRNVDAAQAQFEKALAVSPGSRRNAFYVGIAQFTAGRFDDAAASFRRALELQ-PASD---TEADIADWLEREGRKGLAEAL 1158
            +A A+  A R +++ FP  D GV ++F+G F+ AAPWP+RN   A   F+KALA  P S RN +  G+A + +  +  A   F  A+E + P S    T+ D+A ++ RE + GLA ++
Sbjct:    1 EAIAFKRAVRDMMQ-FPEWDDGVAFVFEGAFYAAAPWPVRNNKYACECFDKALAQQPLSSRNQYLRGVAAYDSNDYGTAKLKFEAAMEYKAPCSSSELTQVDVAAFVLREAKCGLAASI 118
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BLAST of mRNA_P-wetherbeei_contig6912.1.2 vs. uniprot
Match: A0A812PFR3_9DINO (Hypothetical protein n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812PFR3_9DINO)

HSP 1 Score: 70.5 bits (171), Expect = 9.970e-11
Identity = 43/135 (31.85%), Postives = 73/135 (54.07%), Query Frame = 1 
Query:  778 SAKGIVKAVASGDAGAYLAANRVLLRDFPNHDGGVGYIFQGGFFLAAPWPLRNVDAAQAQFEKALAVSPGSRRNAFYVGIAQFTAGRFDDAAASFRRALELQPASDTEADIADWLEREGRKGL---AEALACSGD 1173
            SA GI++   +G    +L   + +    P+ +GG+G+IF+G F++AAPWPLR++  A     +AL      +RN +YVG+A +    + +A   F ++   +P   +E D A  L +E   G+    +AL  +GD
Sbjct:    3 SAYGILRQALTGGGREFLRNAQRMQAVGPDEEGGLGFIFEGCFYIAAPWPLRDLPRALGLMRRALE-RKACKRNYYYVGLANYHLQNYAEARDFFAKSASAKPEFLSEFDFAAGLTQEAEHGVKLATDALKAAGD 136
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6912.1.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5L6Y2_9PHAE1.640e-3942.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CID7_9STRA5.840e-3048.48Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A1Q9DS85_SYMMI5.660e-1629.03Uncharacterized protein n=2 Tax=Symbiodinium micro... [more]
A0A534Q7I9_9DELT6.010e-1634.17Uncharacterized protein n=1 Tax=Deltaproteobacteri... [more]
A0A7S2HMX9_9STRA6.510e-1237.82Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A812PFR3_9DINO9.970e-1131.85Hypothetical protein n=1 Tax=Symbiodinium natans T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6912contigP-wetherbeei_contig6912:8..2563 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2903.EOD10966
Model size1949
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorysignal peptide
Exons4
Evalue1.12e-24
EggNOG OGs2D6NE@1|root,2T2FT@2759|Eukaryota
Cds size1179
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186945.5345466-CDS-P-wetherbeei_contig6912:7..3741683186945.5345466-CDS-P-wetherbeei_contig6912:7..374Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6912 8..374 +
1683186945.545912-CDS-P-wetherbeei_contig6912:452..8201683186945.545912-CDS-P-wetherbeei_contig6912:452..820Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6912 453..820 +
1683186945.5553415-CDS-P-wetherbeei_contig6912:970..9941683186945.5553415-CDS-P-wetherbeei_contig6912:970..994Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6912 971..994 +
1683186945.564878-CDS-P-wetherbeei_contig6912:1373..17931683186945.564878-CDS-P-wetherbeei_contig6912:1373..1793Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6912 1374..1793 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186945.575607-UTR-P-wetherbeei_contig6912:1793..25631683186945.575607-UTR-P-wetherbeei_contig6912:1793..2563Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6912 1794..2563 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6912.1.2prot_P-wetherbeei_contig6912.1.2Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6912 8..1793 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6912.1.2

>prot_P-wetherbeei_contig6912.1.2 ID=prot_P-wetherbeei_contig6912.1.2|Name=mRNA_P-wetherbeei_contig6912.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=393bp
MRSSVAALVVLTMASPASSFLGPFPGSLVTSFVEPALLASSRASNTCMSV
KDGAAESSFQAWRKAWLAGGHGDPTKASKTPTKKGESTPPIWLAAPPDLT
PVRSHGGAKEASLPSTAQAATATAAAAAAAAATAAGPSSVAVLSPQTPPP
PPPQVAPASEPYDTSGPPPSYDALLASGKIATPDAKRAAARAAISWLRRA
TNGNGLGVDGTSDTPEFRALWRAHAPTILSLVRGAAPAGVTTGDAELHQM
FTEGLMYTLSAKGIVKAVASGDAGAYLAANRVLLRDFPNHDGGVGYIFQG
GFFLAAPWPLRNVDAAQAQFEKALAVSPGSRRNAFYVGIAQFTAGRFDDA
AASFRRALELQPASDTEADIADWLEREGRKGLAEALACSGDD*
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mRNA from alignment at P-wetherbeei_contig6912:8..2563+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6912.1.2 ID=mRNA_P-wetherbeei_contig6912.1.2|Name=mRNA_P-wetherbeei_contig6912.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2556bp|location=Sequence derived from alignment at P-wetherbeei_contig6912:8..2563+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAGGTCCTCCGTCGCCGCCCTCGTGGTGCTGACCATGGCGTCACCGGC
TTCGTCGTTCCTCGGACCTTTCCCTGGCAGCCTCGTGACGAGTTTCGTTG
AGCCTGCGTTGTTGGCTTCATCTCGTGCATCGAATACGTGTATGTCCGTG
AAGGACGGAGCAGCGGAATCGTCGTTTCAGGCGTGGCGGAAGGCGTGGCT
GGCTGGGGGCCACGGAGACCCAACAAAGGCTTCGAAGACACCGACAAAGA
AGGGAGAAAGCACGCCACCCATCTGGCTTGCCGCTCCACCAGACCTGACT
CCAGTTCGCAGCCACGGAGGAGCGAAAGAGGCTTCTCTTCCCTCAACAGC
ACAAGCAGCTACGGCAAGTGGAGGAGCAACAACAGCAGCAACAGCGTCAG
CGACAGCAACACCAGCACCACCAGCACCAGCACCAGCAGCAGCAGCAGCA
GCAGCAGCAGCAGCAGCAGCAGCGACAGCAGCAGGTCCGTCTTCTGTCGC
CGTGCTTTCTCCCCAAACACCACCGCCGCCACCACCGCAAGTCGCACCAG
CATCAGAGCCCTACGACACCTCGGGGCCGCCTCCGAGCTACGACGCGCTG
CTCGCCTCCGGCAAAATCGCGACGCCCGACGCGAAGCGCGCCGCCGCCCG
CGCCGCCATCTCGTGGCTCCGCCGCGCCACCAACGGCAACGGCCTCGGCG
TCGACGGCACCAGCGACACGCCCGAGTTCCGGGCGCTGTGGCGGGCGCAC
GCGCCGACGATTCTGTCGCTCGTCCGTGGCGCGGCGCCCGCCGGGGTTAC
GACCGGCGACGCGGTAAGTGGTCTCTTTCCACGGATGGAGAAGCCGTCTT
GTTCAGTTTAAAATCTCTCTCCCAAGTTTTACGAGCTACGGGAGCCAGAT
ATTACGCTTTTATTCTCCACGCCGAGTCTCATTGCGCGAGCAAGCCTCTC
TCCATCTTGCCAGGAATTGCATCAAATGTTTACCGAGGTGAGCCTATGGT
GTGGTTTTGGTGTTTTCTTCCTCCTCTCTTCAGTTGATTACTTCGTCAGA
GCGAAGGCTCTACTGCTCCCTCTTTTCTTCCTTAGATATGCTTTTTGCGG
TAGGAGGGGTTGTGGGCGGACTGTGGTTTCTGTTTGTGAAGGTACCTCTG
AGTGCGGGCAGAATATTTGGAGGAAGACCTGGTTCTCCCGTCTTCTTGTT
TCCTCTTTTTCTTCGCAAAATTTCAACCTCCGAGACAGATCGCTGGGGGA
GATCGCAGCGTTGCAAAGACGGATTGGCCCACCTTCGCTTTTCCTTTTTA
CTGACCCCTTTCCCTTTGCGTGCTGCTTCTTGGCTTCTTCCACCCTTCTG
CTCTGTATCATCGCAGGGGCTCATGTACACGCTCAGCGCCAAGGGCATCG
TCAAAGCCGTCGCCAGCGGCGACGCCGGCGCCTATCTCGCAGCCAACCGC
GTCCTTTTGCGCGATTTCCCGAACCATGATGGTGGTGTCGGTTACATTTT
TCAGGGAGGTTTCTTCCTGGCGGCGCCGTGGCCGCTGCGGAACGTCGACG
CGGCGCAAGCGCAGTTCGAAAAGGCGCTGGCGGTGTCGCCCGGCAGCCGC
CGCAATGCATTTTACGTCGGAATTGCTCAGTTCACAGCCGGACGATTCGA
CGACGCGGCGGCGTCGTTTCGGAGGGCGCTGGAATTGCAGCCGGCATCCG
ACACGGAAGCGGACATCGCGGATTGGCTCGAGCGGGAAGGGCGGAAGGGG
TTGGCCGAGGCACTGGCGTGCAGCGGCGACGACTGAGCGCATTCATTGAC
GGCGGCGGGCGGTGACGGCAGCAGGCGGCAGCGGCCGAGGCCGCTGCGGC
GGCGGCAGCTCGCGGCGGCGGCGGCGGGAGCAGCGGCTGCGACTGCGGCC
TTAGCGTGATACTGCCGGTGGCCACGGAGGCGTTGGCACTGCTGCGGCAG
CGGCGGCCGCGGCCACGGAGGGGTTGGCATTGCTGCGGCAGCGGCGGCCG
AGCCTAAGCGGCAGATGAGCCGAAGCGACGGCAGAGGCAGGGACAGATTA
GCGGCGGCGGCGGTTGTGGTGGCGTCGACAGCCTTGTGGTGACCCGCCTT
TTTGAAATTCAGGTCCAGTTGACAGAGAGAGACGGGAAAAGTCTCAGTAG
ACGTAGCTAGACGCCAGTGTGAAGGCCGAGCAGTCCCTGTCCCGTCTTGT
AGGTGGGGCGGCTAAGGGAAGGGTACGGCTCTTGTCCGCGTCGGCAGTGA
CTTGTGAAACGGTCAATACTGAGCCGAAGAATTTGCGAAAGGAAGAAAAG
TGCTATCGGCGGCGAAAATTTAAGCGGGCAGACGATTCAATTTTCTCCAG
CGGACCGCGCTGAAACGGCCGCAGAGGCAGCGGCGGCCGTCTTTTAAGTG
GCAACGCGACCAAAAGAGGAAAAATCAAAAGAGGAGCTCAGAAGCAGGCA
GAAGACAAAACCCACATCTCTTGACTCACAGCTGCTAACGAATCTTCGGA
AAAGATCGCTTGCGGTGTATATCAAGCAGCAGATTGCGTAACGCACAATA
AAATGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6912:8..2563+

>mRNA_P-wetherbeei_contig6912.1.2 ID=mRNA_P-wetherbeei_contig6912.1.2|Name=mRNA_P-wetherbeei_contig6912.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1179bp|location=Sequence derived from alignment at P-wetherbeei_contig6912:8..2563+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAGGTCCTCCGTCGCCGCCCTCGTGGTGCTGACCATGGCGTCACCGGC
TTCGTCGTTCCTCGGACCTTTCCCTGGCAGCCTCGTGACGAGTTTCGTTG
AGCCTGCGTTGTTGGCTTCATCTCGTGCATCGAATACGTGTATGTCCGTG
AAGGACGGAGCAGCGGAATCGTCGTTTCAGGCGTGGCGGAAGGCGTGGCT
GGCTGGGGGCCACGGAGACCCAACAAAGGCTTCGAAGACACCGACAAAGA
AGGGAGAAAGCACGCCACCCATCTGGCTTGCCGCTCCACCAGACCTGACT
CCAGTTCGCAGCCACGGAGGAGCGAAAGAGGCTTCTCTTCCCTCAACAGC
ACAAGCAGCTACGGCAACAGCAGCAGCAGCAGCAGCAGCAGCAGCGACAG
CAGCAGGTCCGTCTTCTGTCGCCGTGCTTTCTCCCCAAACACCACCGCCG
CCACCACCGCAAGTCGCACCAGCATCAGAGCCCTACGACACCTCGGGGCC
GCCTCCGAGCTACGACGCGCTGCTCGCCTCCGGCAAAATCGCGACGCCCG
ACGCGAAGCGCGCCGCCGCCCGCGCCGCCATCTCGTGGCTCCGCCGCGCC
ACCAACGGCAACGGCCTCGGCGTCGACGGCACCAGCGACACGCCCGAGTT
CCGGGCGCTGTGGCGGGCGCACGCGCCGACGATTCTGTCGCTCGTCCGTG
GCGCGGCGCCCGCCGGGGTTACGACCGGCGACGCGGAATTGCATCAAATG
TTTACCGAGGGGCTCATGTACACGCTCAGCGCCAAGGGCATCGTCAAAGC
CGTCGCCAGCGGCGACGCCGGCGCCTATCTCGCAGCCAACCGCGTCCTTT
TGCGCGATTTCCCGAACCATGATGGTGGTGTCGGTTACATTTTTCAGGGA
GGTTTCTTCCTGGCGGCGCCGTGGCCGCTGCGGAACGTCGACGCGGCGCA
AGCGCAGTTCGAAAAGGCGCTGGCGGTGTCGCCCGGCAGCCGCCGCAATG
CATTTTACGTCGGAATTGCTCAGTTCACAGCCGGACGATTCGACGACGCG
GCGGCGTCGTTTCGGAGGGCGCTGGAATTGCAGCCGGCATCCGACACGGA
AGCGGACATCGCGGATTGGCTCGAGCGGGAAGGGCGGAAGGGGTTGGCCG
AGGCACTGGCGTGCAGCGGCGACGACTGA
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