mRNA_P-wetherbeei_contig6902.2.6 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6902.2.6
Unique NamemRNA_P-wetherbeei_contig6902.2.6
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig6902.2.6 vs. uniprot
Match: A0A835YVI8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVI8_9STRA)

HSP 1 Score: 254 bits (648), Expect = 5.810e-81
Identity = 119/221 (53.85%), Postives = 159/221 (71.95%), Query Frame = 1
Query:  226 LPRGSYSFSTLAALIRLLNGGNQTVASEGLDKLYGEISMSRCAFRLFGTTDALEALKNDSWAGDWQDPKVKQIARIQALAMVVYHPMEHVGWAAYVTPKLVRADGDWWFSRADWTWILYIVIDMYACLLKRREIVRREAEARRKLVMLHADADDKEAKAALQTELDMLARACFVVRLQWWRDVFYLPNAVHWGFYKPPMNKGLVAVLGLAEALVGLRQTWP 888
            L  G Y+ S+LAA++R+LNGG  T  +EGLDKLYGE+ M+RC  R  GTTDALEA++NDSW GDW+D +++ + + QA  M++YHPMEHVG+ AY+ PKLV  +GDWWF++A + W+ Y+V D+Y  LLK +E+ R +A A    + L   ADD EA+AA Q  +        +VRLQ WR +FYLPNA+HW F KP + KG VA LGLAEA+VGL+QT+P
Sbjct:   28 LKTGGYTCSSLAAVLRVLNGGKSTTLTEGLDKLYGEVGMTRCLTRFIGTTDALEAIRNDSWVGDWKDRRIRNLVKFQAWTMLIYHPMEHVGYLAYIVPKLVPLNGDWWFAKACYWWVAYVVADLYISLLKFKELKRSDAAA---ALQLEQAADD-EARAAAQAAVAANQAKRRIVRLQVWRAIFYLPNAIHWSFVKPVLPKGAVAALGLAEAIVGLKQTFP 244          
BLAST of mRNA_P-wetherbeei_contig6902.2.6 vs. uniprot
Match: D8LAU5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LAU5_ECTSI)

HSP 1 Score: 194 bits (494), Expect = 1.110e-57
Identity = 104/216 (48.15%), Postives = 136/216 (62.96%), Query Frame = 1
Query:  241 YSFSTLAALIRLLNGGNQTVASEGLDKLYGEISMSRCAFRLFGTTDALEALKNDSWAGDWQDPKVKQIARIQALAMVVYHPMEHVGWAAYVTPKLVRADGDWWFSRADWTWILYIVIDMYACLLKRREIVRREAEARRKLVMLHADADDKEAKAALQTELDMLARACFVVRLQWWRDVFYLPNAVHWGFYKPPMNKGLVAVLGLAEALVGLRQTWP 888
            YS ST+A +IR  NGG  T  SEGL++LYG +S +R  FR+ GT +A+  LK+ S A  W D +++ +AR+QAL  V YHPME V  A  + PKL   D  WW++R+DW W+ + +IDMY  +LK RE+ RRE   RRKL     D  + E  A L+  L  +A +   V LQ  R VFYLPNAVHW F KPP++  +VA LGL EA VG  Q +P
Sbjct:   35 YSLSTIAQIIRYRNGGKDTRRSEGLNQLYGALSTARVIFRMQGTAEAVWELKHLSGADGWDDVRIRPLARLQALTNVFYHPMEEVALAGGIAPKLFPVDQAWWWARSDWAWLAFCIIDMYMNVLKGRELRRREEGVRRKL----RDCAESET-AGLRQALSQIAASKRQVALQQLRMVFYLPNAVHWAFIKPPVHPLVVAALGLGEAAVGAVQAFP 245          
BLAST of mRNA_P-wetherbeei_contig6902.2.6 vs. uniprot
Match: A0A067DAU4_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067DAU4_SAPPC)

HSP 1 Score: 136 bits (342), Expect = 4.120e-35
Identity = 73/217 (33.64%), Postives = 118/217 (54.38%), Query Frame = 1
Query:  241 YSFSTLAALIRLLNGGNQTVASEGLDKLYGEISMSRCAFRLFGTTDALEALKNDSWAGDWQDPKVKQIARIQALAMVVYHPMEHVGWAAYVTPKLVRADGDWWFSRADWTWILYIVIDMYACLLKRREIVRREAEARRKLVMLHADADDKEAKAALQTELDMLARACFVVRLQWWRDVFYLPNAVHWGFYKPPMNKGLVAVLGLAEALVGLRQTWPH 891
            +  +TLA +I        T  S GL  +  +IS +R   R  G  + +EAL+NDSW     DP+V+Q+ ++Q  +M++Y+P+EHV +  +V PK    D      ++   W +Y+V+DMYA  L+  ++ +RE     K++    D  D +A A   TEL  +      + +  WR+V +LPN +HW   +  + + LV  LG AE ++G+ QTWPH
Sbjct:   28 FGCATLARVIEFY-AAKPTRHSVGLGAVASQISYARYVTRFTGIFECIEALQNDSWTYADDDPRVRQLVKLQVYSMLLYYPLEHVSFVGFVAPKWFNVDAMRAMRQSCMAWTVYVVLDMYANHLRLNKLAKREKMLEAKII----DEADPDAVAERATELATIQSTRQYLIINQWRNVLFLPNCIHWSSERGIIPEVLVQFLGFAEGVLGIWQTWPH 239          
BLAST of mRNA_P-wetherbeei_contig6902.2.6 vs. uniprot
Match: A0A7S3USW6_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3USW6_HETAK)

HSP 1 Score: 112 bits (281), Expect = 2.490e-26
Identity = 77/188 (40.96%), Postives = 105/188 (55.85%), Query Frame = 1
Query:  241 YSFSTLAALIRLLNGGNQTVASEGLDKLYGEISMSRCAFRLF-GTTDALEALKNDSWAG-DWQDPKVKQIARIQALAMVVYHPMEHVGWAAYVTPKLVR--ADGDWWFSRADWTWILYIVIDMYACLLKRREIVRREAEARRKLVMLHADADDKEAKAALQT-ELDMLARACFVVRLQWWRDVFYLPN 789
            Y   TL+   RLL   N+ V S GLD L GEISM+R  +RL  G T +LEALKNDSWAG DWQD ++K+I +  A   + YH  E  GWAA   P+ V   A    +++   +TW+ Y+V++++AC LK RE+ R+ A   +    L A  DD + +AAL    L     A    RL     + +LPN
Sbjct:   44 YGLGTLSGCGRLLGYENERVLS-GLDALSGEISMARMVYRLTNGLTQSLEALKNDSWAGGDWQDKRIKKIYKAMAWCNLGYHVGEAWGWAAAYAPEAVPLPASSAKFWAVTCYTWLAYVVLELWACRLKLRELARKRAVLEK---CLEARPDDVKIRAALAAARLGQRGAAVQAARL-----LLFLPN 222          
BLAST of mRNA_P-wetherbeei_contig6902.2.6 vs. uniprot
Match: A0A7S2EGS5_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EGS5_TRICV)

HSP 1 Score: 98.2 bits (243), Expect = 1.910e-20
Identity = 44/107 (41.12%), Postives = 69/107 (64.49%), Query Frame = 1
Query:  304 SEGLDKLYGEISMSRCAFRLFGTTDALEALKNDSWAGDWQDPKVKQIARIQALAMVVYHPMEHVGWAAYVTPKLVRADGDWWFSRADWTWILYIVIDMYACLLKRRE 624
            S GL K+Y ++SM R A RL+G   +LEA++  SW   W DP++ ++ ++ A +M +Y+P+EHV +A +V P LV+AD + + + +   W  YIV D+  C LK RE
Sbjct:  158 SPGLRKMYLDMSMVRYALRLYGFPSSLEAIRTGSWWAGWTDPRIHKLGKVMAWSMAMYYPLEHVAYARWVAPVLVKADAERYTALSCRAWTTYIVADLLGCFLKIRE 264          
BLAST of mRNA_P-wetherbeei_contig6902.2.6 vs. uniprot
Match: K0TAT8_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TAT8_THAOC)

HSP 1 Score: 93.6 bits (231), Expect = 1.920e-18
Identity = 63/199 (31.66%), Postives = 107/199 (53.77%), Query Frame = 1
Query:  304 SEGLDKLYGEISMSRCAFRLFGTTDALEALKNDSWAG-DWQDPKVKQIARI-QALAMVVYHPMEHVGWAAYVTPKLVRADGDWWFSRADWTWILYIVIDMYACLLKRREIVRREAEARRKLVMLHADADDKEAKAALQTELDMLARACFVVRLQWWRDVFYLPNAVHWGFYK----PPMNKGLVAVLGLAEALVGLRQT 882
            S GL KLYGEISM+R   R +G   +LE  ++ SWAG  W D ++ ++A+   A +M+ Y+P+EH+ +A +  P+LVR D + + + +   W  YI  D     LK +E+ ++ A A R  +M     DDK+A   +  + + L      V+LQ  R + ++  +++W        P +++  +  L L EA V + Q+
Sbjct:  103 SPGLRKLYGEISMTRYVLRFYGFLQSLEGYRSGSWAGGQWNDGRIAKLAKYAMAGSMLAYYPLEHIAYAGWKCPELVRVDANKFSAISCVFWTTYIAGDFAVSFLKWKELGKK-ARAMRDDLMRAKRTDDKQAVIDILEKENELRGKLRHVKLQMLRCMLFILPSINWSLPNWATDPLLDELHLNGLMLGEAYVSVYQS 300          
BLAST of mRNA_P-wetherbeei_contig6902.2.6 vs. uniprot
Match: M4BUC1_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BUC1_HYAAE)

HSP 1 Score: 82.8 bits (203), Expect = 1.400e-15
Identity = 40/108 (37.04%), Postives = 64/108 (59.26%), Query Frame = 1
Query:  292 QTVASEGLDKLYGEISMSRCAFRLFGTTDALEALKNDSWAGDWQDPKVKQIARIQALAMVVYHPMEHVGWAAYVTPKLVRADGDWWFSRADWTWILYIVIDMYACLLK 615
            Q   ++ +  L   ISM+R   R  G  +A  ALK  SW+    D  V+++ R+QAL+MVVYHP+EHV +  +V PKL++ D   +   +   W +Y+++D+YA  L+
Sbjct:   43 QQETAQNIHALASNISMARYVLRFTGGLEAYTALKKGSWSCKDDDEHVQRLVRLQALSMVVYHPLEHVSYVGFVAPKLLKVDAMHFSRLSCRAWGVYVLLDIYASALR 150          
BLAST of mRNA_P-wetherbeei_contig6902.2.6 vs. uniprot
Match: K0SNF8_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SNF8_THAOC)

HSP 1 Score: 75.9 bits (185), Expect = 7.520e-13
Identity = 53/187 (28.34%), Postives = 96/187 (51.34%), Query Frame = 1
Query:  340 MSRCAFRLFGTTDALEALKNDSWAG-DWQDPKVKQIARI-QALAMVVYHPMEHVGWAAYVTPKLVRADGDWWFSRADWTWILYIVIDMYACLLKRREIVRREAEARRKLVMLHADADDKEAKAALQTELDMLARACFVVRLQWWRDVFYLPNAVHWGFYK----PPMNKGLVAVLGLAEALVGLRQT 882
            M+R   R +G   +LE  ++ SWAG  W D ++ ++A+   A +M+ Y+P+EH+ +A +  P+LVR D + + + +   W  YI  D     LK +E+ ++  E R  L M     DDK+A   +  + + L      V+LQ  R + ++  +++W        P +++  +  L L EA V + Q+
Sbjct:    1 MTRYVLRFYGFLQSLEGYRSGSWAGGQWNDGRIAKLAKYAMAGSMLAYYPLEHIAYAGWKCPELVRVDANKFSAISCVFWTTYIAGDFAVSFLKWKELGKKAREMRDDL-MRAKRTDDKQAVIDILEKENELRGKLRHVKLQMLRCMLFILPSINWSLPNWATDPLLDELHLNGLMLGEAYVSVYQS 186          
BLAST of mRNA_P-wetherbeei_contig6902.2.6 vs. uniprot
Match: B8BW24_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BW24_THAPS)

HSP 1 Score: 70.9 bits (172), Expect = 6.910e-11
Identity = 34/90 (37.78%), Postives = 56/90 (62.22%), Query Frame = 1
Query:  280 NGGNQTVASEGLDKLYGEISMSRCAFRLFGTTDALEALKNDSWAGD-WQDPKVKQIAR-IQALAMVVYHPMEHVGWAAYVTPKLVRADGD 543
            +     V S  + KLY ++SM+R A R +G   +LE  ++ SWAG  W +P + +IA+ + A +M+VY+P+EHV +A +  P LV+ D +
Sbjct:  100 SNNKNNVLSPSMRKLYLDLSMTRYALRFYGFLQSLEGFRSGSWAGGTWDNPMIAKIAKYLMAGSMLVYYPLEHVAYAGWQMPNLVKVDAN 189          
BLAST of mRNA_P-wetherbeei_contig6902.2.6 vs. uniprot
Match: A0A0C3QYG4_9AGAM (Uncharacterized protein n=1 Tax=Tulasnella calospora MUT 4182 TaxID=1051891 RepID=A0A0C3QYG4_9AGAM)

HSP 1 Score: 58.9 bits (141), Expect = 2.180e-6
Identity = 66/238 (27.73%), Postives = 100/238 (42.02%), Query Frame = 1
Query:  250 STLAALIRLLNGGNQTVASEGL------------DKLYGEISMSRCAFRLFGTTDALEALKNDSWAGDWQDPKVKQ---IARIQALAMVVYHPMEHVGW----AAYVTPKLVRADGDWWFSRADWTWILYIVIDMYACLLKRREIVRREAE-ARRKLVMLHADADD--KEAKAALQTELDMLARACFVVRLQWWRDVFYLPNAVHWGFYKPPM-NKGLVAVLGLAEALVGLRQTWPHT 894
            +TL  L+ LLN   +   S GL             K+ G IS SR  +RLFG    ++ L     A +   P  ++   I R+QALAM+VY+P+EH+ +      Y  P    +    W  RA   W +Y+V+         + +  +E E AR  +     +A D      AA + E   L R    ++L  + ++  LP  +HW   K    NK LV + G    +      W  T
Sbjct:   53 TTLKILVPLLNWRARFRHSAGLRKTPNSPVADRFSKMAGLISDSRMLWRLFGLVPIIKWLS----AMERTPPSNRRLLTIERLQALAMLVYYPLEHLYYFGSHEVYKVPVKKLSTLAVWSCRA---WAVYVVLHFLHLREDFKLLQEKETELARNAVAEKKVEAGDLVPADHAATRAEYKTLQRKRRALKLDLFVNLVNLPQCLHWSLEKGYFQNKHLVDLFGWLAGIASFTSGWEAT 283          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6902.2.6 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A835YVI8_9STRA5.810e-8153.85Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D8LAU5_ECTSI1.110e-5748.15Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A067DAU4_SAPPC4.120e-3533.64Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]
A0A7S3USW6_HETAK2.490e-2640.96Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S2EGS5_TRICV1.910e-2041.12Hypothetical protein (Fragment) n=1 Tax=Trieres ch... [more]
K0TAT8_THAOC1.920e-1831.66Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
M4BUC1_HYAAE1.400e-1537.04Uncharacterized protein n=1 Tax=Hyaloperonospora a... [more]
K0SNF8_THAOC7.520e-1328.34Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
B8BW24_THAPS6.910e-1137.78Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]
A0A0C3QYG4_9AGAM2.180e-627.73Uncharacterized protein n=1 Tax=Tulasnella calospo... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6902contigP-wetherbeei_contig6902:1466..3236 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog112098.XP_008607189.1
PFAMsPEX11
Model size897
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons3
Evalue5.2e-35
EggNOG OGs2CXQZ@1|root,2RZ56@2759|Eukaryota
Ec32 ortholog descriptionPeroxisomal biogenesis factor 11
Ec32 orthologEc-27_006350.1
DescriptionPeroxisomal biogenesis factor 11 (PEX11)
Cds size897
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186944.876092-CDS-P-wetherbeei_contig6902:1465..16831683186944.876092-CDS-P-wetherbeei_contig6902:1465..1683Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6902 1466..1683 -
1683186944.888095-CDS-P-wetherbeei_contig6902:2034..22641683186944.888095-CDS-P-wetherbeei_contig6902:2034..2264Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6902 2035..2264 -
1683186944.8985224-CDS-P-wetherbeei_contig6902:2787..32361683186944.8985224-CDS-P-wetherbeei_contig6902:2787..3236Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6902 2788..3236 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6902.2.6prot_P-wetherbeei_contig6902.2.6Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6902 1466..3236 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6902.2.6

>prot_P-wetherbeei_contig6902.2.6 ID=prot_P-wetherbeei_contig6902.2.6|Name=mRNA_P-wetherbeei_contig6902.2.6|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=299bp
RQKLNERCWRDTLATPLASSTATRWSRPSGACETVALALCWHRRIPSTGI
FHSIPPLLASLAFDWETHENRFRFSLPRGSYSFSTLAALIRLLNGGNQTV
ASEGLDKLYGEISMSRCAFRLFGTTDALEALKNDSWAGDWQDPKVKQIAR
IQALAMVVYHPMEHVGWAAYVTPKLVRADGDWWFSRADWTWILYIVIDMY
ACLLKRREIVRREAEARRKLVMLHADADDKEAKAALQTELDMLARACFVV
RLQWWRDVFYLPNAVHWGFYKPPMNKGLVAVLGLAEALVGLRQTWPHT*
back to top

mRNA from alignment at P-wetherbeei_contig6902:1466..3236-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6902.2.6 ID=mRNA_P-wetherbeei_contig6902.2.6|Name=mRNA_P-wetherbeei_contig6902.2.6|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1771bp|location=Sequence derived from alignment at P-wetherbeei_contig6902:1466..3236- (Phaeothamnion wetherbeei SAG_119_79)
CGGCAAAAGCTGAACGAACGATGCTGGAGAGATACGTTGGCTACACCTCT GGCCTCTTCTACGGCGACAAGGTGGTCAAGACCGTCGGGTGCGTGCGAAA CCGTGGCGCTGGCGCTGTGTTGGCATCGACGCATACCTTCAACCGGCATT TTTCACTCCATTCCTCCTTTGCTTGCATCGCTGGCATTTGACTGGGAGAC CCACGAAAACCGCTTCCGATTTTCCCTTCCGCGGGGCAGCTACTCCTTCT CTACCTTGGCGGCGCTGATACGCCTCTTAAATGGTGGTAATCAGACAGTG GCATCGGAAGGGCTGGACAAGCTGTATGGCGAAATCAGCATGTCCCGCTG CGCCTTCAGACTCTTTGGCACCACCGACGCGCTCGAGGCGCTGAAGAACG ACTCCTGGGCTGGAGACTGGCAAGACCCAAAGGTCAAGCAGATTGCGAGG TGAGTGTGCCACACGTGGTTATTGGATATGCTTGGTTGTATTGCCTGAAC TCAAGCGCAATGGAATTTGATGGATCGTCTACTGCGGTGTATTGGATAGC TGCCTGCTCTGCTCTTCAAAACCTTTTCAACTTACGGCCTTTTTGCGATT TGATGCGCCGGCTATGTCTTGATGCTTTCTGTGAAATCCCATGATGTCTT GGCTGAAGCTCCGCTTAATCTCATGTGGCGTGTTGTTGCAACAAAGAGCA ACCCATCCGATGTTGCCTACAGGTAGAGGCGGCTTAGAGGAAAATGGCTT TCAGCAATAGCTCTCTTTCTGTTATTTGGAAGGGACGTTCCGCCATTCCC ACGTGCTTTTTTTGGCCTGGGTTCACCCTGATCCAAACCGTCCCCGCCTT ATCCGTTTGCCCTAAGTAGGCATTTATTCGCAAGCTTGCTTCATTCAATT CCACCTTCCACTCTTCTCTTCCTTTTCCTCGTAAATCCTACCTCTTTTCC CTCGCCTCCCTCCCGACTGCAGGATTCAGGCGCTGGCGATGGTCGTCTAC CACCCGATGGAGCACGTCGGCTGGGCGGCCTACGTGACCCCTAAGTTGGT GCGGGCTGACGGTGACTGGTGGTTCTCGCGCGCCGATTGGACATGGATCC TCTACATCGTCATCGACATGTACGCCTGCCTCCTCAAGCGGCGGGAGATC GTGCGGCGGGAGGCCGAGGCGCGCCGGAAGCTGGTCATGTTGCATGCCGA CGGTGAGCATGAGAGGGCGAGCTGGCGGTGTAAAGGGTGTTCCATCTATG TCAGGAGGTGTTTTGCGTCCTGTGCATCGGAAGAGAGGAATCGGGGCCTC GTGTTGGACGGATGTTTCGTCCATTTTTACCTCCATTCGAGCTTCCGTTG TCTGTTTTGGAGTGGTCCGCAGATCTGAAGGGAAGGTGGAGCGCGCGCAT GTTCCCAGTGATTCCGGGCCATGTGTCATGTAATGTTCGCCAGGAGGACG AGGAGATGTGCCTTTCTTTGCTGCCGCATGCCCCAAAGAAAAGCGAAACT TATCTGCTCCTCCTGTTCTGAATGACTCGCGGTCTTTTGTTGCACGAGCC CAGCAGATGACAAGGAGGCCAAGGCGGCGCTCCAAACGGAGCTGGACATG CTGGCGCGGGCCTGCTTCGTTGTGCGGCTGCAGTGGTGGCGGGACGTCTT TTACCTGCCCAACGCCGTGCACTGGGGCTTCTATAAGCCGCCCATGAACA AGGGCCTCGTGGCGGTCCTCGGGCTGGCGGAGGCGCTCGTCGGGCTCCGG CAAACGTGGCCCCACACATGA
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig6902:1466..3236-

>mRNA_P-wetherbeei_contig6902.2.6 ID=mRNA_P-wetherbeei_contig6902.2.6|Name=mRNA_P-wetherbeei_contig6902.2.6|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=897bp|location=Sequence derived from alignment at P-wetherbeei_contig6902:1466..3236- (Phaeothamnion wetherbeei SAG_119_79)
CGGCAAAAGCTGAACGAACGATGCTGGAGAGATACGTTGGCTACACCTCT
GGCCTCTTCTACGGCGACAAGGTGGTCAAGACCGTCGGGTGCGTGCGAAA
CCGTGGCGCTGGCGCTGTGTTGGCATCGACGCATACCTTCAACCGGCATT
TTTCACTCCATTCCTCCTTTGCTTGCATCGCTGGCATTTGACTGGGAGAC
CCACGAAAACCGCTTCCGATTTTCCCTTCCGCGGGGCAGCTACTCCTTCT
CTACCTTGGCGGCGCTGATACGCCTCTTAAATGGTGGTAATCAGACAGTG
GCATCGGAAGGGCTGGACAAGCTGTATGGCGAAATCAGCATGTCCCGCTG
CGCCTTCAGACTCTTTGGCACCACCGACGCGCTCGAGGCGCTGAAGAACG
ACTCCTGGGCTGGAGACTGGCAAGACCCAAAGGTCAAGCAGATTGCGAGG
ATTCAGGCGCTGGCGATGGTCGTCTACCACCCGATGGAGCACGTCGGCTG
GGCGGCCTACGTGACCCCTAAGTTGGTGCGGGCTGACGGTGACTGGTGGT
TCTCGCGCGCCGATTGGACATGGATCCTCTACATCGTCATCGACATGTAC
GCCTGCCTCCTCAAGCGGCGGGAGATCGTGCGGCGGGAGGCCGAGGCGCG
CCGGAAGCTGGTCATGTTGCATGCCGACGCAGATGACAAGGAGGCCAAGG
CGGCGCTCCAAACGGAGCTGGACATGCTGGCGCGGGCCTGCTTCGTTGTG
CGGCTGCAGTGGTGGCGGGACGTCTTTTACCTGCCCAACGCCGTGCACTG
GGGCTTCTATAAGCCGCCCATGAACAAGGGCCTCGTGGCGGTCCTCGGGC
TGGCGGAGGCGCTCGTCGGGCTCCGGCAAACGTGGCCCCACACATGA
back to top