mRNA_P-wetherbeei_contig6900.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6900.1.1
Unique NamemRNA_P-wetherbeei_contig6900.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6900.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6900contigP-wetherbeei_contig6900:2..1299 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1147
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-02_005780.1
Cds size1122
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186944.6850445-UTR-P-wetherbeei_contig6900:1..261683186944.6850445-UTR-P-wetherbeei_contig6900:1..26Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6900 2..26 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186944.6986299-CDS-P-wetherbeei_contig6900:26..5121683186944.6986299-CDS-P-wetherbeei_contig6900:26..512Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6900 27..512 +
1683186944.7100976-CDS-P-wetherbeei_contig6900:663..12991683186944.7100976-CDS-P-wetherbeei_contig6900:663..1299Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6900 664..1299 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6900.1.1prot_P-wetherbeei_contig6900.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6900 27..1299 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6900.1.1

>prot_P-wetherbeei_contig6900.1.1 ID=prot_P-wetherbeei_contig6900.1.1|Name=mRNA_P-wetherbeei_contig6900.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=374bp
MRHTADSSRGDRSRSPSPAASDDWRRHGPVPRYPTPFYAQSTDHMPGRPP
PSGDGSDSWPPWQAPPPPRGVSGASGGGGGGYGHGGAYASYDKNSGFGGS
GSGGSGSGLPQLQSPSRWPRRPRTHMRSSLVGAAYNPCPFPTFFGQYSSL
PTISSFEESTRKVSWADVRGQRLAEVHVIEPTYRREDFVPGHVGLGLGLG
LGLASETGRRDLSKKEKKLLRGDEDDDDAGGGADDSDSGGSSAGGGGGSA
GGDGDDRSESVPSARGGGSGRGAGSGGSDGAGGGCSAGSGGGGGGNSSDA
RLEMDPDLEESGAMSDHSVDSESSSLGDALALPPPLDEARLRSAVRAAAA
AAAAAAAAAGAGAGGVIVGTAIGD
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mRNA from alignment at P-wetherbeei_contig6900:2..1299+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6900.1.1 ID=mRNA_P-wetherbeei_contig6900.1.1|Name=mRNA_P-wetherbeei_contig6900.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1298bp|location=Sequence derived from alignment at P-wetherbeei_contig6900:2..1299+ (Phaeothamnion wetherbeei SAG_119_79)
CGACCAGGAGAGTGCTTCGTCATACATGCGGCACACCGCTGATAGCAGTC
GCGGCGACCGCAGCCGCTCCCCTTCGCCGGCCGCATCCGACGACTGGCGC
CGCCATGGGCCGGTGCCGCGCTACCCGACGCCGTTCTACGCACAATCCAC
CGACCACATGCCCGGCCGGCCTCCGCCAAGCGGCGACGGCAGCGACAGCT
GGCCGCCATGGCAAGCGCCGCCGCCGCCACGCGGCGTCTCGGGCGCTTCG
GGCGGTGGCGGTGGTGGCTACGGGCACGGCGGCGCGTATGCTTCATATGA
CAAAAATAGCGGATTCGGCGGCAGCGGCAGCGGCGGAAGCGGCTCCGGAC
TGCCGCAGCTGCAATCGCCATCGCGGTGGCCTCGGCGGCCGCGCACGCAC
ATGCGGTCATCGCTGGTGGGTGCTGCGTACAATCCGTGCCCATTCCCAAC
ATTTTTCGGGCAGTACAGCAGCCTCCCCACCATCAGCTCCTTTGAGGAAA
GCACCCGAAAGGTGAGCCGTAGCAGCGAAACTCTTATTTAACCTGGTTGA
TTATAATATGTCGATTCTCATTAAGGCTTCAATAGTTTGGTTGCTAACAC
TATTACTACACTTTGCATTTTCTCTCTGCATCCCGGTTCCCCTGCCTCTT
CCCCCCCGGCAGGTGAGCTGGGCGGACGTTCGCGGGCAGCGGCTGGCGGA
AGTCCACGTCATCGAGCCGACGTACCGCCGGGAGGACTTTGTGCCCGGCC
ACGTCGGGCTCGGCCTCGGGCTTGGACTCGGACTGGCATCGGAGACGGGC
CGACGTGACTTGTCCAAGAAGGAGAAGAAGCTGCTGCGCGGCGACGAGGA
CGACGACGACGCTGGCGGCGGCGCGGACGACTCGGACAGCGGCGGCAGCA
GCGCCGGCGGGGGCGGCGGCAGCGCTGGCGGCGACGGCGATGACCGGTCG
GAGTCGGTGCCATCCGCCCGTGGAGGCGGCAGCGGTCGCGGCGCCGGCAG
TGGTGGAAGCGACGGGGCTGGTGGGGGGTGCAGCGCCGGCAGCGGCGGCG
GCGGTGGCGGCAATTCATCGGACGCCAGACTCGAGATGGACCCGGACCTG
GAGGAGAGCGGAGCCATGTCGGACCATTCGGTGGATTCGGAGAGTAGCAG
CCTCGGTGATGCACTAGCCCTGCCACCCCCGCTGGATGAGGCGCGCCTAC
GATCTGCCGTTCGGGCGGCAGCGGCCGCTGCTGCGGCGGCGGCGGCGGCG
GCGGGGGCGGGGGCGGGCGGTGTCATCGTTGGCACGGCCATTGGCGAC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6900:2..1299+

>mRNA_P-wetherbeei_contig6900.1.1 ID=mRNA_P-wetherbeei_contig6900.1.1|Name=mRNA_P-wetherbeei_contig6900.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1122bp|location=Sequence derived from alignment at P-wetherbeei_contig6900:2..1299+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCGGCACACCGCTGATAGCAGTCGCGGCGACCGCAGCCGCTCCCCTTC
GCCGGCCGCATCCGACGACTGGCGCCGCCATGGGCCGGTGCCGCGCTACC
CGACGCCGTTCTACGCACAATCCACCGACCACATGCCCGGCCGGCCTCCG
CCAAGCGGCGACGGCAGCGACAGCTGGCCGCCATGGCAAGCGCCGCCGCC
GCCACGCGGCGTCTCGGGCGCTTCGGGCGGTGGCGGTGGTGGCTACGGGC
ACGGCGGCGCGTATGCTTCATATGACAAAAATAGCGGATTCGGCGGCAGC
GGCAGCGGCGGAAGCGGCTCCGGACTGCCGCAGCTGCAATCGCCATCGCG
GTGGCCTCGGCGGCCGCGCACGCACATGCGGTCATCGCTGGTGGGTGCTG
CGTACAATCCGTGCCCATTCCCAACATTTTTCGGGCAGTACAGCAGCCTC
CCCACCATCAGCTCCTTTGAGGAAAGCACCCGAAAGGTGAGCTGGGCGGA
CGTTCGCGGGCAGCGGCTGGCGGAAGTCCACGTCATCGAGCCGACGTACC
GCCGGGAGGACTTTGTGCCCGGCCACGTCGGGCTCGGCCTCGGGCTTGGA
CTCGGACTGGCATCGGAGACGGGCCGACGTGACTTGTCCAAGAAGGAGAA
GAAGCTGCTGCGCGGCGACGAGGACGACGACGACGCTGGCGGCGGCGCGG
ACGACTCGGACAGCGGCGGCAGCAGCGCCGGCGGGGGCGGCGGCAGCGCT
GGCGGCGACGGCGATGACCGGTCGGAGTCGGTGCCATCCGCCCGTGGAGG
CGGCAGCGGTCGCGGCGCCGGCAGTGGTGGAAGCGACGGGGCTGGTGGGG
GGTGCAGCGCCGGCAGCGGCGGCGGCGGTGGCGGCAATTCATCGGACGCC
AGACTCGAGATGGACCCGGACCTGGAGGAGAGCGGAGCCATGTCGGACCA
TTCGGTGGATTCGGAGAGTAGCAGCCTCGGTGATGCACTAGCCCTGCCAC
CCCCGCTGGATGAGGCGCGCCTACGATCTGCCGTTCGGGCGGCAGCGGCC
GCTGCTGCGGCGGCGGCGGCGGCGGCGGGGGCGGGGGCGGGCGGTGTCAT
CGTTGGCACGGCCATTGGCGAC
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