mRNA_P-wetherbeei_contig690.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig690.3.1
Unique NamemRNA_P-wetherbeei_contig690.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig690.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig690contigP-wetherbeei_contig690:6397..8733 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1852
Hectar predicted targeting categoryother localisation
Exons3
Cds size1530
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186944.5726967-UTR-P-wetherbeei_contig690:6396..64491683186944.5726967-UTR-P-wetherbeei_contig690:6396..6449Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig690 6397..6449 +
1683186944.608944-UTR-P-wetherbeei_contig690:8464..87331683186944.608944-UTR-P-wetherbeei_contig690:8464..8733Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig690 8465..8733 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186944.5819812-CDS-P-wetherbeei_contig690:6449..70701683186944.5819812-CDS-P-wetherbeei_contig690:6449..7070Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig690 6450..7070 +
1683186944.5905745-CDS-P-wetherbeei_contig690:7375..81341683186944.5905745-CDS-P-wetherbeei_contig690:7375..8134Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig690 7376..8134 +
1683186944.6012719-CDS-P-wetherbeei_contig690:8314..84641683186944.6012719-CDS-P-wetherbeei_contig690:8314..8464Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig690 8315..8464 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig690.3.1prot_P-wetherbeei_contig690.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig690 6450..8464 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig690.3.1

>prot_P-wetherbeei_contig690.3.1 ID=prot_P-wetherbeei_contig690.3.1|Name=mRNA_P-wetherbeei_contig690.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=510bp
MATAAAAAGGGDSFSRPLLQVQASAGRRREPTNADGLYNGHGAPNSHSNL
NGHCIGCGSGNGFSSGGGGYGGFGADDDDPWDTCGAPRPFAAGFTKESPA
RAARANEEVMPPLSLRRRELGATDGAEGADDSDGVDGFADVNKRDEDRAD
GGGAATIDNDDHDSSGGEKEGGGDDGVDLSAETIPAQAYKAAKRLMVRQG
RRQAELQEYIDALQARHSAAALSPGVSASQADERPFDSSPPVMGRGYGSG
GGGGHGDGSGRSGDGGGGGTGFGVEVSVGVGGGQLTAEAAMAVAASNPDA
GPSLGASYSQRAAEAGVGWRPPAPPVDASHQAASPSIGARGGASTGGGGS
SGGRGGAGGGVGGGGSSSSARFSAIFTEIPEGNNQRWLSASDQWEFGTLT
GAGGDGPAVAALGKSGRSWNYDASVALDAALPPPLPPPATHRLWESVYAS
SAAALERPEQISVSTSRRRGDGGVSENESFLLRHLSAASSQPAKKCGLLR
FATSSKARL*
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mRNA from alignment at P-wetherbeei_contig690:6397..8733+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig690.3.1 ID=mRNA_P-wetherbeei_contig690.3.1|Name=mRNA_P-wetherbeei_contig690.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2337bp|location=Sequence derived from alignment at P-wetherbeei_contig690:6397..8733+ (Phaeothamnion wetherbeei SAG_119_79)
CGGCCGTCGGCACCATTCCCGCGGCGGCGGCGGCCACGGCGGCTGCGGCG
GCGATGGCCACGGCCGCTGCAGCGGCGGGAGGCGGCGACAGCTTTTCTCG
TCCGCTGCTGCAGGTTCAGGCGAGCGCGGGCCGACGCAGAGAGCCGACGA
ACGCCGACGGCCTCTACAACGGCCACGGCGCTCCCAACAGTCACAGCAAC
CTCAACGGCCACTGCATCGGCTGTGGCAGCGGCAACGGCTTCAGCAGCGG
CGGCGGCGGCTACGGCGGCTTCGGTGCGGACGATGATGACCCGTGGGACA
CATGTGGCGCGCCGCGGCCGTTCGCGGCCGGCTTCACGAAGGAATCACCG
GCTCGTGCAGCTAGGGCGAACGAGGAGGTGATGCCGCCGCTGTCGCTGCG
GCGGCGCGAGCTCGGCGCGACGGACGGTGCGGAGGGTGCGGATGATTCGG
ACGGCGTCGACGGCTTCGCCGATGTAAACAAGAGGGATGAGGACAGGGCG
GATGGCGGCGGCGCCGCGACCATTGACAATGACGATCACGACAGCAGCGG
CGGCGAGAAGGAGGGCGGGGGCGACGACGGTGTCGATCTGTCGGCAGAGA
CGATTCCGGCGCAGGCGTACAAGGCAGCGAAGCGGCTCATGGTGCGGCAG
GGTCGCCGGCAGGCAGAGCTGCAGGTATGTCTTGAATTGCACCGGTTGCT
ACTGCTGTCGCCGCTGCAGTCTCATGTCTTCGGAAACTGTGATAGTCGCT
GCGTCGCGCGTTACCGCGGTTCTCTGTTGGCATCGCTGCCTTTAATGCCT
ATTAGTAGACTCAGTAACTGCATTGCTAATCTGGCTGCAAACCGCCTGCG
CTGTTGCGTGGGCTGCCGGTCCAGCTACGTTTTGCCATTCGACGATTCTT
CCTCTCTGTTATCGTCTTTTTCAAATTTCCGGAGTGCCTCACATGGAGCC
AGCCGCACCCTCCTATAAATCCTTTACAGGAGTACATTGACGCGTTGCAG
GCACGCCATTCGGCAGCTGCCCTCTCGCCGGGCGTGTCGGCGTCGCAGGC
GGACGAAAGACCATTCGACAGCTCGCCGCCTGTTATGGGAAGAGGCTATG
GTAGCGGCGGCGGCGGCGGCCACGGCGATGGCAGCGGCAGGAGTGGCGAC
GGTGGCGGCGGCGGCACTGGCTTTGGCGTTGAAGTGAGCGTTGGCGTCGG
AGGTGGTCAATTGACTGCCGAAGCGGCGATGGCGGTGGCTGCTTCGAATC
CAGATGCTGGTCCGTCGCTGGGAGCGTCATATTCGCAACGTGCGGCGGAG
GCAGGCGTAGGATGGAGACCACCTGCGCCGCCGGTGGATGCATCGCATCA
GGCTGCGTCCCCTTCCATCGGCGCACGTGGCGGTGCCAGTACAGGCGGCG
GCGGCAGCAGCGGCGGCCGCGGCGGTGCAGGCGGCGGTGTCGGCGGCGGC
GGCAGCAGCAGCAGCGCGCGCTTCTCGGCGATTTTCACGGAGATACCGGA
GGGCAACAACCAGAGGTGGCTTTCTGCCAGCGACCAGTGGGAATTTGGCA
CCTTAACGGGCGCCGGCGGCGATGGACCCGCCGTGGCGGCGCTGGGCAAA
AGCGGCCGGAGCTGGAACTACGATGCGAGCGTGGCGCTGGACGCGGCGCT
GCCGCCCCCGCTGCCGCCGCCGGCGACGCATCGCCTGTGGGAATCCGTGT
ATGCGTCTTCGGCGGCGGCGCTCGAGCGGCCGGAGCAGGTGAGCAGCCGC
GCCTTTTCATCTGCCTTGACATCAGCTGGAGAGGCCGCTTACATTCGTGG
TGATGGTCGAGTCTAACGAGTGTCTTATCGCACGCTACCACCGGGCGTTT
GAGCGGAATCTGCTCTCGTTCTCTGCTGTGGTGCTTTCCTCGCCGGCTTG
TTCCCTGTTGCGTGACAGATCTCCGTGTCAACCAGCCGCCGACGTGGCGA
CGGCGGCGTGTCGGAGAACGAGTCCTTCCTTCTCCGGCATCTCAGCGCGG
CGAGCTCGCAGCCTGCAAAGAAGTGCGGGCTCTTACGTTTCGCCACTTCT
TCCAAAGCGCGGCTATGAGTATTTGGGGGAATCCGGGAACTGTACATTGT
GTCTTTTCAGATTTGTCTATCTACGCATCACCAAGCCGTCCATGTTGCCT
GTCCTGCGCACACGACTGTACGTATCGCATGCTTCAGCTTCGGTTCTTGG
TTTCTTGCATGCTCTGTTTCCGGCCCCTTCGCCATGCCGTTCCTTTCAGG
ACCACGGCCGGTGCGGCGAGGCGGCTAAAAACAGCCCAGCCGCCGCCGCC
GCCATGTCCCATCTATGGATCGGTGCCCAAGCGACGT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig690:6397..8733+

>mRNA_P-wetherbeei_contig690.3.1 ID=mRNA_P-wetherbeei_contig690.3.1|Name=mRNA_P-wetherbeei_contig690.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1530bp|location=Sequence derived from alignment at P-wetherbeei_contig690:6397..8733+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCCACGGCCGCTGCAGCGGCGGGAGGCGGCGACAGCTTTTCTCGTCC
GCTGCTGCAGGTTCAGGCGAGCGCGGGCCGACGCAGAGAGCCGACGAACG
CCGACGGCCTCTACAACGGCCACGGCGCTCCCAACAGTCACAGCAACCTC
AACGGCCACTGCATCGGCTGTGGCAGCGGCAACGGCTTCAGCAGCGGCGG
CGGCGGCTACGGCGGCTTCGGTGCGGACGATGATGACCCGTGGGACACAT
GTGGCGCGCCGCGGCCGTTCGCGGCCGGCTTCACGAAGGAATCACCGGCT
CGTGCAGCTAGGGCGAACGAGGAGGTGATGCCGCCGCTGTCGCTGCGGCG
GCGCGAGCTCGGCGCGACGGACGGTGCGGAGGGTGCGGATGATTCGGACG
GCGTCGACGGCTTCGCCGATGTAAACAAGAGGGATGAGGACAGGGCGGAT
GGCGGCGGCGCCGCGACCATTGACAATGACGATCACGACAGCAGCGGCGG
CGAGAAGGAGGGCGGGGGCGACGACGGTGTCGATCTGTCGGCAGAGACGA
TTCCGGCGCAGGCGTACAAGGCAGCGAAGCGGCTCATGGTGCGGCAGGGT
CGCCGGCAGGCAGAGCTGCAGGAGTACATTGACGCGTTGCAGGCACGCCA
TTCGGCAGCTGCCCTCTCGCCGGGCGTGTCGGCGTCGCAGGCGGACGAAA
GACCATTCGACAGCTCGCCGCCTGTTATGGGAAGAGGCTATGGTAGCGGC
GGCGGCGGCGGCCACGGCGATGGCAGCGGCAGGAGTGGCGACGGTGGCGG
CGGCGGCACTGGCTTTGGCGTTGAAGTGAGCGTTGGCGTCGGAGGTGGTC
AATTGACTGCCGAAGCGGCGATGGCGGTGGCTGCTTCGAATCCAGATGCT
GGTCCGTCGCTGGGAGCGTCATATTCGCAACGTGCGGCGGAGGCAGGCGT
AGGATGGAGACCACCTGCGCCGCCGGTGGATGCATCGCATCAGGCTGCGT
CCCCTTCCATCGGCGCACGTGGCGGTGCCAGTACAGGCGGCGGCGGCAGC
AGCGGCGGCCGCGGCGGTGCAGGCGGCGGTGTCGGCGGCGGCGGCAGCAG
CAGCAGCGCGCGCTTCTCGGCGATTTTCACGGAGATACCGGAGGGCAACA
ACCAGAGGTGGCTTTCTGCCAGCGACCAGTGGGAATTTGGCACCTTAACG
GGCGCCGGCGGCGATGGACCCGCCGTGGCGGCGCTGGGCAAAAGCGGCCG
GAGCTGGAACTACGATGCGAGCGTGGCGCTGGACGCGGCGCTGCCGCCCC
CGCTGCCGCCGCCGGCGACGCATCGCCTGTGGGAATCCGTGTATGCGTCT
TCGGCGGCGGCGCTCGAGCGGCCGGAGCAGATCTCCGTGTCAACCAGCCG
CCGACGTGGCGACGGCGGCGTGTCGGAGAACGAGTCCTTCCTTCTCCGGC
ATCTCAGCGCGGCGAGCTCGCAGCCTGCAAAGAAGTGCGGGCTCTTACGT
TTCGCCACTTCTTCCAAAGCGCGGCTATGA
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