mRNA_P-wetherbeei_contig6895.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6895.1.1
Unique NamemRNA_P-wetherbeei_contig6895.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6895.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6895contigP-wetherbeei_contig6895:646..1394 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size749
Hectar predicted targeting categorymitochondrion
Exons1
Cds size729
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186944.1090782-CDS-P-wetherbeei_contig6895:645..13741683186944.1090782-CDS-P-wetherbeei_contig6895:645..1374Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6895 646..1374 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186944.1254363-UTR-P-wetherbeei_contig6895:1374..13941683186944.1254363-UTR-P-wetherbeei_contig6895:1374..1394Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6895 1375..1394 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6895.1.1prot_P-wetherbeei_contig6895.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6895 646..1374 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6895.1.1

>prot_P-wetherbeei_contig6895.1.1 ID=prot_P-wetherbeei_contig6895.1.1|Name=mRNA_P-wetherbeei_contig6895.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=243bp
MGRRSSAADCALASVIRIYAPTAKQKGRRHRRPHSVPAKPMATTEEIDRR
YALLCATEARNAAEMEAAGDAKYDVDRAIVCPINYLDHVVPLPWNRNIAV
ETTAQPIRRRQEATTEKGADCDREAPRAWFWGGPSEGSASTPGTHRTKGA
LIDHGSLSSVCENQTSEGGAPAPLGALWQSAAGGGRHETSLFVAQPSPLH
RCDESDPARPLTPARLAAQAALEARAALLAAFNGADALDALLA
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mRNA from alignment at P-wetherbeei_contig6895:646..1394-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6895.1.1 ID=mRNA_P-wetherbeei_contig6895.1.1|Name=mRNA_P-wetherbeei_contig6895.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=749bp|location=Sequence derived from alignment at P-wetherbeei_contig6895:646..1394- (Phaeothamnion wetherbeei SAG_119_79)
CGGCTGGACCTCTGCTGAAAATGGGCAGGCGTTCATCAGCAGCGGATTGC
GCGCTAGCTTCAGTGATTCGAATCTATGCACCCACTGCAAAGCAGAAAGG
CCGGCGGCATCGCCGCCCTCATTCGGTTCCCGCCAAACCGATGGCAACGA
CAGAGGAGATTGATCGACGATATGCGCTTCTCTGTGCTACGGAGGCACGG
AATGCTGCAGAAATGGAGGCGGCCGGCGATGCCAAGTATGATGTTGACCG
AGCGATCGTCTGTCCTATAAATTACCTTGACCATGTGGTCCCCTTGCCTT
GGAATCGGAATATTGCCGTCGAAACAACGGCCCAACCGATTCGACGTCGC
CAGGAAGCCACCACTGAAAAGGGCGCTGACTGTGACCGCGAAGCTCCGCG
TGCGTGGTTTTGGGGCGGCCCATCAGAGGGTAGTGCCAGTACACCAGGTA
CACACAGAACTAAGGGCGCCTTGATCGATCATGGCTCCCTTAGTTCCGTG
TGTGAGAACCAAACGAGCGAAGGAGGAGCGCCTGCTCCCTTGGGCGCCCT
TTGGCAAAGCGCAGCCGGCGGCGGCAGACATGAGACCTCCCTCTTTGTCG
CGCAGCCGTCGCCCCTCCACCGCTGCGACGAAAGCGATCCCGCGCGGCCG
TTGACTCCCGCGCGGCTCGCCGCCCAAGCCGCGCTCGAAGCACGGGCGGC
CCTCCTCGCGGCGTTCAACGGCGCCGACGCGCTCGACGCGCTATTGGCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6895:646..1394-

>mRNA_P-wetherbeei_contig6895.1.1 ID=mRNA_P-wetherbeei_contig6895.1.1|Name=mRNA_P-wetherbeei_contig6895.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=729bp|location=Sequence derived from alignment at P-wetherbeei_contig6895:646..1394- (Phaeothamnion wetherbeei SAG_119_79)
ATGGGCAGGCGTTCATCAGCAGCGGATTGCGCGCTAGCTTCAGTGATTCG
AATCTATGCACCCACTGCAAAGCAGAAAGGCCGGCGGCATCGCCGCCCTC
ATTCGGTTCCCGCCAAACCGATGGCAACGACAGAGGAGATTGATCGACGA
TATGCGCTTCTCTGTGCTACGGAGGCACGGAATGCTGCAGAAATGGAGGC
GGCCGGCGATGCCAAGTATGATGTTGACCGAGCGATCGTCTGTCCTATAA
ATTACCTTGACCATGTGGTCCCCTTGCCTTGGAATCGGAATATTGCCGTC
GAAACAACGGCCCAACCGATTCGACGTCGCCAGGAAGCCACCACTGAAAA
GGGCGCTGACTGTGACCGCGAAGCTCCGCGTGCGTGGTTTTGGGGCGGCC
CATCAGAGGGTAGTGCCAGTACACCAGGTACACACAGAACTAAGGGCGCC
TTGATCGATCATGGCTCCCTTAGTTCCGTGTGTGAGAACCAAACGAGCGA
AGGAGGAGCGCCTGCTCCCTTGGGCGCCCTTTGGCAAAGCGCAGCCGGCG
GCGGCAGACATGAGACCTCCCTCTTTGTCGCGCAGCCGTCGCCCCTCCAC
CGCTGCGACGAAAGCGATCCCGCGCGGCCGTTGACTCCCGCGCGGCTCGC
CGCCCAAGCCGCGCTCGAAGCACGGGCGGCCCTCCTCGCGGCGTTCAACG
GCGCCGACGCGCTCGACGCGCTATTGGCG
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