mRNA_P-wetherbeei_contig6894.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig6894.1.1 vs. uniprot
Match: A0A399X9M1_9BACT (HTH araC/xylS-type domain-containing protein n=6 Tax=Armatimonadetes TaxID=67819 RepID=A0A399X9M1_9BACT) HSP 1 Score: 88.6 bits (218), Expect = 1.990e-18 Identity = 47/107 (43.93%), Postives = 68/107 (63.55%), Query Frame = 1
Query: 1 RPEARRVELALTWAETNLGSARNLRAIARRADLSESHFRALFRKLRKQPAGAWLRARRLWEARRLLVATGLTLKEIAAQLGYSDVVSFNRAFGQHHGTPPGRFRKTR 321
RP R++ AL + + N G + +A R LS SHFR LFR+ +P +L ARRL +ARRLL+ T + +++I A+LG+S + SF+RAF +H+GTPP R R
Sbjct: 280 RPTDRQIRAALGFVDQNFGKDLSDDEVAHRVGLSTSHFRYLFRQATGRPFQQYLLARRLEQARRLLIETDIPVQDIGAELGFSSLASFSRAFARHYGTPPSALRDER 386
BLAST of mRNA_P-wetherbeei_contig6894.1.1 vs. uniprot
Match: A0A0P1FCR6_9RHOB (L-rhamnose operon transcriptional activator RhaR n=2 Tax=Thalassobius autumnalis TaxID=2072972 RepID=A0A0P1FCR6_9RHOB) HSP 1 Score: 75.1 bits (183), Expect = 5.190e-14 Identity = 44/100 (44.00%), Postives = 60/100 (60.00%), Query Frame = 1
Query: 16 RVELALTWAETNLGSARNLRAIARRADLSESHFRALFRKLRKQPAGAWLRARRLWEARRLLVATGLTLKEIAAQLGYSDVVSFNRAFGQHHGTPPGRFRK 315
RV+ A A L R+L+ +A A LSES FRA R PAG L+ +L A RLL TGLTL ++AAQ+G++ S + AF +H+G PGR+R+
Sbjct: 150 RVDRAWQEATEKLAEIRSLQDVAALAGLSESSFRAEHRTQHGAPAGRHLQRLKLRHAARLLTTTGLTLSDVAAQVGFAHAESLSAAFSRHYGQSPGRYRR 249
BLAST of mRNA_P-wetherbeei_contig6894.1.1 vs. uniprot
Match: A0A238LGN4_9RHOB (Transcriptional activator FtrA n=2 Tax=Flavimaricola marinus TaxID=1819565 RepID=A0A238LGN4_9RHOB) HSP 1 Score: 73.9 bits (180), Expect = 1.340e-13 Identity = 45/105 (42.86%), Postives = 58/105 (55.24%), Query Frame = 1
Query: 25 LALTWA--ETNLGSARNLRAIARRADLSESHFRALFRKLRKQPAGAWLRARRLWEARRLLVATGLTLKEIAAQLGYSDVVSFNRAFGQHHGTPPGRFRKTRTPVV 333
LA WA NLG+ R+L +A +L ES FR L R + AGA+LR R+ +A LL TGL++ EIA Q+GY + N AF Q G PG FR+ P
Sbjct: 147 LARAWALAAQNLGAMRSLVDVAALINLRESAFRTLHRNVHGTSAGAYLRGLRMSQAESLLATTGLSMTEIARQVGYGHAETLNGAFRQSRGMTPGTFRRHAQPFA 251
BLAST of mRNA_P-wetherbeei_contig6894.1.1 vs. uniprot
Match: UPI000FDAA5E1 (helix-turn-helix transcriptional regulator n=1 Tax=Rhodobacterales TaxID=204455 RepID=UPI000FDAA5E1) HSP 1 Score: 73.6 bits (179), Expect = 2.020e-13 Identity = 48/111 (43.24%), Postives = 57/111 (51.35%), Query Frame = 1
Query: 7 EARRVELALTW--AETNLGSARNLRAIARRADLSESHFRALFRKLRKQPAGAWLRARRLWEARRLLVATGLTLKEIAAQLGYSDVVSFNRAFGQHHGTPPGRFRKTRTPVV 333
+ R LA W A NLG R+L +A L ES R L R++ PAGA LR RL A LL TGLTL EIA Q+GY + + AF Q G PG FR+ P
Sbjct: 147 DRRAQRLAQAWDQAAANLGGMRSLVDVAALIGLRESALRTLHREVHGTPAGAHLRELRLTRAEALLATTGLTLAEIARQVGYGHAETLSAAFQQSRGMTPGGFRRHARPFA 257
BLAST of mRNA_P-wetherbeei_contig6894.1.1 vs. uniprot
Match: A0A399WRK5_9BACT (AraC family transcriptional regulator n=1 Tax=Armatimonadetes bacterium TaxID=2033014 RepID=A0A399WRK5_9BACT) HSP 1 Score: 69.3 bits (168), Expect = 5.680e-12 Identity = 46/105 (43.81%), Postives = 59/105 (56.19%), Query Frame = 1
Query: 1 RPEARR-----VELALTWAETNLGSARNLRAIARRADLSESHFRALFRKLRKQPAGAWLRARRLWEARRLLVATGLTLKEIAAQLGYSDVVSFNRAFGQHHGTPP 300
RPEA R VE A + + N +A R LS SHFR LF+ L P +L RL AR+LL + L++KE+AA++GYSD SF RA+ HHG PP
Sbjct: 120 RPEANRFAARTVETAKLLIQKHFAEEINDEWVAGRVHLSRSHFRYLFKALTGVPFKRYLSEIRLNHARQLLENSPLSVKEVAAKVGYSDSSSFYRAYRAHHGVPP 224
BLAST of mRNA_P-wetherbeei_contig6894.1.1 vs. uniprot
Match: UPI001E3AC9C8 (AraC family transcriptional regulator n=1 Tax=Microbacterium sp. W2R TaxID=2898586 RepID=UPI001E3AC9C8) HSP 1 Score: 68.9 bits (167), Expect = 1.490e-11 Identity = 44/104 (42.31%), Postives = 59/104 (56.73%), Query Frame = 1
Query: 1 RPEARRVELALTWAETNLGSARNLRAIARRADLSESHFRALFRKLRKQPAGAWLRARRLWEARRLLVATGLTLKEIAAQLGYSDVVSFNRAFGQHHGTPPGRFR 312
R A R+ + + NL SA + +AR A+LS SHF ALF+ +L+ R AR LLV T L++ EIAAQ+GYSD F+R F +GT P +FR
Sbjct: 181 RHTADRIHVVQEYLRDNLASAVPVSELARLAELSTSHFSALFKASTGYSVVDYLKRLRSARARELLVTTDLSVAEIAAQVGYSDAFYFSRQFRAINGTSPTQFR 284
BLAST of mRNA_P-wetherbeei_contig6894.1.1 vs. uniprot
Match: A0A653TPI4_9PSED (AraC family transcriptional regulator n=5 Tax=unclassified Pseudomonas TaxID=196821 RepID=A0A653TPI4_9PSED) HSP 1 Score: 67.0 bits (162), Expect = 6.600e-11 Identity = 42/103 (40.78%), Postives = 56/103 (54.37%), Query Frame = 1
Query: 7 EARRVELALTWAETNLGSARNLRAIARRADLSESHFRALFRKLRKQPAGAWLRARRLWEARRLLVATGLTLKEIAAQLGYSDVVSFNRAFGQHHGTPPGRFRK 315
E R V LA T LG +L +A +LS HF +FR+ P AWLR RRL +AR LL +G ++A QLG+SD +R F Q +G PG +R+
Sbjct: 169 EPRAVALAKELLATRLGEPPSLEELAALVNLSPFHFARVFRRATGLPPHAWLRQRRLEQARALL-RSGCAPLQVAVQLGFSDQSHLSRQFKQSYGVSPGEYRR 270
BLAST of mRNA_P-wetherbeei_contig6894.1.1 vs. uniprot
Match: UPI001C578A54 (AraC family transcriptional regulator n=1 Tax=Variovorax boronicumulans TaxID=436515 RepID=UPI001C578A54) HSP 1 Score: 66.6 bits (161), Expect = 1.080e-10 Identity = 36/81 (44.44%), Postives = 49/81 (60.49%), Query Frame = 1
Query: 79 IARRADLSESHFRALFRKLRKQPAGAWLRARRLWEARRLLVATGLTLKEIAAQLGYSDVVSFNRAFGQHHGTPPGRFRKTR 321
+A D+S HF F++ G ++R RR+ EA RLLV TGL +++I A +GY D +F RAF Q HG P RFR+ R
Sbjct: 215 LAALCDMSPFHFSRQFKRETGFSPGRFIRMRRMKEASRLLVGTGLGIEDITAAVGYQDPSAFRRAFIQEHGMTPSRFRRGR 295
BLAST of mRNA_P-wetherbeei_contig6894.1.1 vs. uniprot
Match: UPI000D3DA15E (helix-turn-helix domain-containing protein n=1 Tax=Planctomonas deserti TaxID=2144185 RepID=UPI000D3DA15E) HSP 1 Score: 64.7 bits (156), Expect = 5.920e-10 Identity = 37/104 (35.58%), Postives = 52/104 (50.00%), Query Frame = 1
Query: 4 PEARRVELALTWAETNLGSARNLRAIARRADLSESHFRALFRKLRKQPAGAWLRARRLWEARRLLVATGLTLKEIAAQLGYSDVVSFNRAFGQHHGTPPGRFRK 315
P + L WA+ NL + +A RA S F FR AW+R+RRL EARRLL T ++ IAA G+ V+ + F +GTPP ++R+
Sbjct: 206 PSDHAIAAVLDWAQANLREPLTIDDLAARARQSRRTFIRAFRASTGTTPAAWIRSRRLDEARRLLETTDSSIDRIAADCGFGSAVTLRQRFEAEYGTPPSQYRR 309
BLAST of mRNA_P-wetherbeei_contig6894.1.1 vs. uniprot
Match: U2ZR26_PSEA4 (Putative AraC family transcriptional regulator n=5 Tax=Pseudomonas TaxID=286 RepID=U2ZR26_PSEA4) HSP 1 Score: 64.3 bits (155), Expect = 6.500e-10 Identity = 40/103 (38.83%), Postives = 55/103 (53.40%), Query Frame = 1
Query: 7 EARRVELALTWAETNLGSARNLRAIARRADLSESHFRALFRKLRKQPAGAWLRARRLWEARRLLVATGLTLKEIAAQLGYSDVVSFNRAFGQHHGTPPGRFRK 315
E R V LA LG +L +A +LS HF +FR+ P AWL+ RRL +AR LL +G ++A QLG++D NR F Q +G PG +R+
Sbjct: 170 EPRAVALAKELLAARLGEPPSLEELATLVNLSPFHFARVFRRATGLPPHAWLKQRRLEQARALL-RSGCAPLQVALQLGFADQSHLNRQFKQSYGVSPGEYRR 271 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6894.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig6894.1.1 >prot_P-wetherbeei_contig6894.1.1 ID=prot_P-wetherbeei_contig6894.1.1|Name=mRNA_P-wetherbeei_contig6894.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=112bp RPEARRVELALTWAETNLGSARNLRAIARRADLSESHFRALFRKLRKQPAback to top mRNA from alignment at P-wetherbeei_contig6894:320..655+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig6894.1.1 ID=mRNA_P-wetherbeei_contig6894.1.1|Name=mRNA_P-wetherbeei_contig6894.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=336bp|location=Sequence derived from alignment at P-wetherbeei_contig6894:320..655+ (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig6894:320..655+ >mRNA_P-wetherbeei_contig6894.1.1 ID=mRNA_P-wetherbeei_contig6894.1.1|Name=mRNA_P-wetherbeei_contig6894.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=336bp|location=Sequence derived from alignment at P-wetherbeei_contig6894:320..655+ (Phaeothamnion wetherbeei SAG_119_79)back to top |