mRNA_P-wetherbeei_contig6893.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6893.1.1
Unique NamemRNA_P-wetherbeei_contig6893.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6893.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6893contigP-wetherbeei_contig6893:1193..1843 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size177
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size177
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186943.941207-CDS-P-wetherbeei_contig6893:1192..12811683186943.941207-CDS-P-wetherbeei_contig6893:1192..1281Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6893 1193..1281 -
1683186943.9519498-CDS-P-wetherbeei_contig6893:1755..18431683186943.9519498-CDS-P-wetherbeei_contig6893:1755..1843Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6893 1756..1843 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6893.1.1prot_P-wetherbeei_contig6893.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6893 1193..1843 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6893.1.1

>prot_P-wetherbeei_contig6893.1.1 ID=prot_P-wetherbeei_contig6893.1.1|Name=mRNA_P-wetherbeei_contig6893.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=59bp
IFKSFRDLRREFSGRRDENADDDFEGCPSEHRLQGRSGRGDIVCARTARF
KSLRRHKR*
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mRNA from alignment at P-wetherbeei_contig6893:1193..1843-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6893.1.1 ID=mRNA_P-wetherbeei_contig6893.1.1|Name=mRNA_P-wetherbeei_contig6893.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=651bp|location=Sequence derived from alignment at P-wetherbeei_contig6893:1193..1843- (Phaeothamnion wetherbeei SAG_119_79)
ATTTTTAAGTCCTTCCGAGATCTTCGACGGGAATTTTCAGGAAGGCGAGA
CGAAAACGCGGACGACGATTTCGAAGGCTGTCCGTCCGGTGAGCACGCGG
GGTACGCCATTCCCATCGCAGGGCACCCAATAGTATTACCGTTAGGAATC
TCTGGCTGGGTTACGTGGGAGGGAGAAATAAGGACAACGCGTAACTGATG
TAGCCCAAGCTCTGACTTCTGGAGCAGTGCGGTACGATTGTTTGAGTCGT
GACAGGATGATTATCGAAAAGTGCAGGGTTTATGCACGGTTGTTTTTTTT
TGCTGTCACAAATGAGACACAGGGACGAATGCTACAGGTAATTCACTTTA
TTAGGGCCGGCGGCCTGTTAATTATTTGATCTATTTCCCCTTTCGAAATT
TTGTTCAATGAAAGTTCGGGGACACCAGGAGAGGAGGAGTGCTCTTTTCT
TCCTCAATCCATCACCCTAGGCTCCTTCTATTTAAGAGCTCTTTCCTCAG
GTTCCTGTTTTTACCCCACCTGCTCCCACACCAAAGAAACGCTTGCTTTT
CTCGTTCTTCAGAACATCGGCTGCAAGGACGGTCTGGGCGCGGCGACATC
GTATGTGCACGCACTGCGCGTTTCAAGTCACTTCGTCGGCACAAGAGGTA
A
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6893:1193..1843-

>mRNA_P-wetherbeei_contig6893.1.1 ID=mRNA_P-wetherbeei_contig6893.1.1|Name=mRNA_P-wetherbeei_contig6893.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=177bp|location=Sequence derived from alignment at P-wetherbeei_contig6893:1193..1843- (Phaeothamnion wetherbeei SAG_119_79)
ATTTTTAAGTCCTTCCGAGATCTTCGACGGGAATTTTCAGGAAGGCGAGA
CGAAAACGCGGACGACGATTTCGAAGGCTGTCCGTCCGAACATCGGCTGC
AAGGACGGTCTGGGCGCGGCGACATCGTATGTGCACGCACTGCGCGTTTC
AAGTCACTTCGTCGGCACAAGAGGTAA
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