mRNA_P-wetherbeei_contig6887.1.2 (mRNA) Phaeothamnion wetherbeei SAG_119_79
|
Overview
Homology
BLAST of mRNA_P-wetherbeei_contig6887.1.2 vs. uniprot
Match: D8LJK6_ECTSI (CID domain-containing protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJK6_ECTSI) HSP 1 Score: 108 bits (271), Expect = 2.660e-23 Identity = 57/126 (45.24%), Postives = 80/126 (63.49%), Query Frame = 2
Query: 41 AKSLLRALNTCCASGPKPSASKVEGATKIALQMAKDYKRAVHVIESFIRKARPEHKLVGCYVVDAVVKNSWHKYGRKDVFAPRFAQRMATETLPALLTAQKSHMPSIHRVVREWRDKRVFGPLPAY 418
A S+ +AL S SAS+V+ A AL K+YKR VH IE +IRKA+P+H++ GC+V+D+V + + K+G KDVF PRFAQRM+ ET+ L P + RV+REW +K +F L A+
Sbjct: 9 AASMHKALKVLATSSRPISASRVKTAAARALDNVKEYKRVVHAIERYIRKAQPQHRIGGCFVIDSVCRQAQSKWGHKDVFTPRFAQRMS-ETVENLRNVPDGDKPPVFRVIREWHEKGMFKGLEAF 133
BLAST of mRNA_P-wetherbeei_contig6887.1.2 vs. uniprot
Match: A0A6H5JF85_9PHAE (CID domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF85_9PHAE) HSP 1 Score: 107 bits (267), Expect = 4.860e-21 Identity = 55/121 (45.45%), Postives = 77/121 (63.64%), Query Frame = 2
Query: 56 RALNTCCASGPKPSASKVEGATKIALQMAKDYKRAVHVIESFIRKARPEHKLVGCYVVDAVVKNSWHKYGRKDVFAPRFAQRMATETLPALLTAQKSHMPSIHRVVREWRDKRVFGPLPAY 418
+AL S SAS+V+ A AL K+YKR VH IE +IRKA+P+H++ GC+V+D+V + + K+G KDVF PRFAQRM+ ET+ L P + RV+REW +K +F L A+
Sbjct: 14 KALKVLATSSRPISASRVKTAAARALDNVKEYKRVVHAIERYIRKAQPQHRIGGCFVIDSVCRQAHSKWGHKDVFTPRFAQRMS-ETVENLRNVPDGDKPPVFRVIREWHEKGMFKGLEAF 133
BLAST of mRNA_P-wetherbeei_contig6887.1.2 vs. uniprot
Match: A0A7G3AYH6_LUTLO (Putative rna polymerase ii c-terminal domain-binding protein ra4 n=1 Tax=Lutzomyia longipalpis TaxID=7200 RepID=A0A7G3AYH6_LUTLO) HSP 1 Score: 80.1 bits (196), Expect = 3.520e-12 Identity = 45/108 (41.67%), Postives = 61/108 (56.48%), Query Frame = 2
Query: 86 PKPSASKVEGATKIALQMAKDYKRAVHVIESFIRKARPEHKLVGCYVVDAVVKNSWHKYG-RKDVFAPRFAQRMATETLPALLTAQKSHMPSIHRVVREWRDKRVFGP 406
P S +K+ T+ A++ K YK V +E FI K +PE+K+ G YV+DA+V+ S H++G KDVFAPRFAQ M +T L I RV+ W VF P
Sbjct: 19 PPISKAKMGAITRAAMKAIKFYKHVVQSVEKFILKCKPEYKVPGLYVIDAIVRQSRHQFGPEKDVFAPRFAQNMQ-QTFSNLFRCTPEDKSKIVRVLNLWLKNNVFSP 125
BLAST of mRNA_P-wetherbeei_contig6887.1.2 vs. uniprot
Match: A0A6B2EH07_9DIPT (Putative rna polymerase ii c-terminal domain-binding protein ra4 n=1 Tax=Phlebotomus kandelakii TaxID=1109342 RepID=A0A6B2EH07_9DIPT) HSP 1 Score: 79.0 bits (193), Expect = 8.020e-12 Identity = 45/108 (41.67%), Postives = 61/108 (56.48%), Query Frame = 2
Query: 86 PKPSASKVEGATKIALQMAKDYKRAVHVIESFIRKARPEHKLVGCYVVDAVVKNSWHKYG-RKDVFAPRFAQRMATETLPALLTAQKSHMPSIHRVVREWRDKRVFGP 406
P S +K+ T+ A++ K YK V +E FI K +PE+K+ G YV+DA+V+ S H++G KDVFAPRFAQ M +T L I RV+ W VF P
Sbjct: 19 PPISKAKMGSITRGAMKAIKFYKHVVQSVEKFILKCKPEYKVPGLYVIDAIVRQSRHQFGPEKDVFAPRFAQNMQ-QTFANLFRCAPEDKSKIIRVLNLWLKNNVFSP 125
BLAST of mRNA_P-wetherbeei_contig6887.1.2 vs. uniprot
Match: A0A671M7F3_9TELE (Splicing factor, arginine/serine-rich 15-like n=3 Tax=Cyprininae TaxID=2743694 RepID=A0A671M7F3_9TELE) HSP 1 Score: 70.5 bits (171), Expect = 3.100e-9 Identity = 38/106 (35.85%), Postives = 58/106 (54.72%), Query Frame = 2
Query: 86 PKPSASKVEGATKIALQMAKDYKRAVHVIESFIRKARPEHKLVGCYVVDAVVKNSWHKYGR-KDVFAPRFAQRMATETLPALLTAQKSHMPSIHRVVREWRDKRVF 400
P S +K+ TK ++ K YK V ++E FI++ +P+ K+ G YVVD++++ S H++G+ KDVF PRF + T T L I RV+ W VF
Sbjct: 21 PPISRAKMMSVTKAGIKAIKLYKHVVQIVEKFIKRCKPDLKVAGLYVVDSIIRQSRHQFGKDKDVFGPRFLKNF-TVTFQNLFQCPADDKGKILRVLNLWEKNDVF 125
BLAST of mRNA_P-wetherbeei_contig6887.1.2 vs. uniprot
Match: A0A671M7Q4_9TELE (Splicing factor, arginine/serine-rich 15-like n=10 Tax=Cyprininae TaxID=2743694 RepID=A0A671M7Q4_9TELE) HSP 1 Score: 70.5 bits (171), Expect = 3.430e-9 Identity = 38/106 (35.85%), Postives = 58/106 (54.72%), Query Frame = 2
Query: 86 PKPSASKVEGATKIALQMAKDYKRAVHVIESFIRKARPEHKLVGCYVVDAVVKNSWHKYGR-KDVFAPRFAQRMATETLPALLTAQKSHMPSIHRVVREWRDKRVF 400
P S +K+ TK ++ K YK V ++E FI++ +P+ K+ G YVVD++++ S H++G+ KDVF PRF + T T L I RV+ W VF
Sbjct: 21 PPISRAKMMSVTKAGIKAIKLYKHVVQIVEKFIKRCKPDLKVAGLYVVDSIIRQSRHQFGKDKDVFGPRFLKNF-TVTFQNLFQCPADDKGKILRVLNLWEKNDVF 125
BLAST of mRNA_P-wetherbeei_contig6887.1.2 vs. uniprot
Match: A0A177B9V9_9BILA (CID domain-containing protein n=1 Tax=Intoshia linei TaxID=1819745 RepID=A0A177B9V9_9BILA) HSP 1 Score: 69.3 bits (168), Expect = 7.720e-9 Identity = 42/111 (37.84%), Postives = 64/111 (57.66%), Query Frame = 2
Query: 53 LRALNTCCASGPKPSASKVEGATKIALQMAKDYKRAVHVIESFIRKARPEHKLVGCYVVDAVVKNSWHKYGR-KDVFAPRFAQRMATETLPALLTAQKSHMPSIHRVVREW 382
LR+L++ K S +K+ TK+ + K YK AV +E FI KAR + KL G Y++D++V+ S H+YG+ KDVF PRF++ + +T +L I RV+ W
Sbjct: 11 LRSLHSAKTPISKASMTKI---TKLCFRAIKLYKHAVQCVEKFIEKARTDMKLTGLYLIDSIVRQSIHQYGKDKDVFGPRFSKNIF-KTFNHILNCPVETRSKIERVLTLW 117
BLAST of mRNA_P-wetherbeei_contig6887.1.2 vs. uniprot
Match: A0A090L3M5_STRRB (RNA recognition motif domain and CID domain and RNA polymerase II-binding domain and ENTH/VHS domain and Nucleotide-binding, alpha-beta plait domain-containing protein n=4 Tax=Strongyloides TaxID=6247 RepID=A0A090L3M5_STRRB) HSP 1 Score: 64.3 bits (155), Expect = 2.090e-7 Identity = 43/129 (33.33%), Postives = 67/129 (51.94%), Query Frame = 2
Query: 62 LNTCCASGPKPSASKVEGATKIALQMAKDYKRAVHVIESFIRKARPEHKLVGCYVVDAVVKNSWHKYGRKDVFAPRFAQRMATETLPALLTAQKSHMPSIHRVVREWRDKRVFGP---LPAYRHPDDDG 439
LN +S P ++E K+ L +YK V +E FI K ++KL+G Y++DA++ S HKY KD F RFA + +T+ +L S + RVV+ W K++F P Y++ +D G
Sbjct: 18 LNALTSSKPSFGKQRIEEIAKLGLAAVSNYKHVVMHLEKFIWKTTSKYKLIGIYILDALLCASKHKYKGKDKFRVRFAVNLF-KTIKNVLN-NVSDKKKVIRVVKLWEAKKIFEKSVLTPIYKYCEDIG 144
BLAST of mRNA_P-wetherbeei_contig6887.1.2 vs. uniprot
Match: A0A0N4ZZ94_PARTI (Uncharacterized protein n=1 Tax=Parastrongyloides trichosuri TaxID=131310 RepID=A0A0N4ZZ94_PARTI) HSP 1 Score: 60.8 bits (146), Expect = 2.600e-6 Identity = 37/113 (32.74%), Postives = 60/113 (53.10%), Query Frame = 2
Query: 62 LNTCCASGPKPSASKVEGATKIALQMAKDYKRAVHVIESFIRKARPEHKLVGCYVVDAVVKNSWHKYGRKDVFAPRFAQRMATETLPALLTAQKSHMPSIHRVVREWRDKRVF 400
LN + P ++E K+ L +YK V +E FI K+ ++KL+G Y++DA++ S HKY KD F RFA + +T+ +L S + RV++ W K++F
Sbjct: 13 LNALTSGKPSFGKQRIEEIAKLGLAAVSNYKHVVMHLEKFIWKSTSKYKLIGIYILDALLCASKHKYKGKDKFRVRFAVNLH-KTIKNVLN-NVSDKGKVVRVLKLWEAKKIF 123
BLAST of mRNA_P-wetherbeei_contig6887.1.2 vs. uniprot
Match: A0A1L8DHK0_9DIPT (Putative rna polymerase ii c-terminal domain-binding protein ra4 (Fragment) n=2 Tax=Nyssomyia neivai TaxID=330878 RepID=A0A1L8DHK0_9DIPT) HSP 1 Score: 60.1 bits (144), Expect = 7.110e-6 Identity = 32/72 (44.44%), Postives = 42/72 (58.33%), Query Frame = 2
Query: 194 RPEHKLVGCYVVDAVVKNSWHKYG-RKDVFAPRFAQRMATETLPALLTAQKSHMPSIHRVVREWRDKRVFGP 406
+PE+K+ G YV+DA+V+ S H++G KDVFAPRFAQ M +T L I RV+ W VF P
Sbjct: 2 KPEYKVPGLYVIDAIVRQSRHQFGPEKDVFAPRFAQNMQ-QTFANLFRCTPEDKSKIVRVLNLWLKNNVFSP 72 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6887.1.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 10
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig6887.1.2 >prot_P-wetherbeei_contig6887.1.2 ID=prot_P-wetherbeei_contig6887.1.2|Name=mRNA_P-wetherbeei_contig6887.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=450bp MEEEAKSLLRALNTCCASGPKPSASKVEGATKIALQMAKDYKRAVHVIESback to top mRNA from alignment at P-wetherbeei_contig6887:64..1661- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig6887.1.2 ID=mRNA_P-wetherbeei_contig6887.1.2|Name=mRNA_P-wetherbeei_contig6887.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1598bp|location=Sequence derived from alignment at P-wetherbeei_contig6887:64..1661- (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig6887:64..1661- >mRNA_P-wetherbeei_contig6887.1.2 ID=mRNA_P-wetherbeei_contig6887.1.2|Name=mRNA_P-wetherbeei_contig6887.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1350bp|location=Sequence derived from alignment at P-wetherbeei_contig6887:64..1661- (Phaeothamnion wetherbeei SAG_119_79)back to top |