mRNA_P-wetherbeei_contig6863.1.2 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6863.1.2
Unique NamemRNA_P-wetherbeei_contig6863.1.2
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig6863.1.2 vs. uniprot
Match: A0A835Z8H2_9STRA (Disproportionate superoxide radical into hydrogen peroxide n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8H2_9STRA)

HSP 1 Score: 228 bits (581), Expect = 1.220e-73
Identity = 108/139 (77.70%), Postives = 120/139 (86.33%), Query Frame = 1
Query:  187 LATRMQATEDAPTILEGEIEGLRPGRHAFHVHAFADFSEGLVGGGGIFNPFGKNHGAPDDEERMAGDLGNIDVDEQGVCRVHIEDRVVKLIGPHSIIGRSLIVKAGEDDFGRGGHELSLTTGNSGARVAGGVVGIAPSK 603
            L T  QA EDA TI+EG+I GLRPGRH  HVH F DFSEGL   GGIFNPFGKNHGAPDDEERM GDLGN++ DE+GVC++ IED +VKLIGPHS+IGRS+IVKA EDD GRGGHELSL+TGNSGARVAGGV+GIAPSK
Sbjct:   17 LLTFSQAQEDASTIIEGQISGLRPGRHGLHVHIFGDFSEGLTSAGGIFNPFGKNHGAPDDEERMVGDLGNVEADEEGVCKIAIEDSLVKLIGPHSVIGRSIIVKANEDDLGRGGHELSLSTGNSGARVAGGVIGIAPSK 155          
BLAST of mRNA_P-wetherbeei_contig6863.1.2 vs. uniprot
Match: A0A7S2UTD5_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UTD5_9STRA)

HSP 1 Score: 218 bits (555), Expect = 1.100e-69
Identity = 101/134 (75.37%), Postives = 116/134 (86.57%), Query Frame = 1
Query:  202 QATEDAPTILEGEIEGLRPGRHAFHVHAFADFSEGLVGGGGIFNPFGKNHGAPDDEERMAGDLGNIDVDEQGVCRVHIEDRVVKLIGPHSIIGRSLIVKAGEDDFGRGGHELSLTTGNSGARVAGGVVGIAPSK 603
            QA EDAPTI+EGEI GL PGRH FHVH F DFS+G +  GGIFNPFGKNHGAPDDEERMAGDLGNI+V+++GV  V +EDRV+KLIGPHS+IGR +++ +GEDD GRGGHELSLT GNSG RVAGGV+GIA SK
Sbjct:   22 QAQEDAPTIIEGEIRGLTPGRHGFHVHVFGDFSQGFISAGGIFNPFGKNHGAPDDEERMAGDLGNIEVNDEGVAMVRMEDRVLKLIGPHSVIGRCIVITSGEDDLGRGGHELSLTNGNSGPRVAGGVIGIASSK 155          
BLAST of mRNA_P-wetherbeei_contig6863.1.2 vs. uniprot
Match: D7FW94_ECTSI (Disproportionate superoxide radical into hydrogen peroxide n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FW94_ECTSI)

HSP 1 Score: 216 bits (551), Expect = 4.620e-69
Identity = 102/134 (76.12%), Postives = 114/134 (85.07%), Query Frame = 1
Query:  202 QATEDAPTILEGEIEGLRPGRHAFHVHAFADFSEGLVGGGGIFNPFGKNHGAPDDEERMAGDLGNIDVDEQGVCRVHIEDRVVKLIGPHSIIGRSLIVKAGEDDFGRGGHELSLTTGNSGARVAGGVVGIAPSK 603
            QA E+APTI+ GEI G+RPGRH   VH F DFSEGLV  GGIFNPF KNHGAPDDE+RM GDLGNID D+ GVC+VH+EDR+V+LIGPHSIIGRS+I+ AGEDD GRGGHEL  TTGN+GARV GGVVGIA SK
Sbjct:   23 QAQEEAPTIISGEIAGMRPGRHGIRVHVFGDFSEGLVSAGGIFNPFSKNHGAPDDEDRMVGDLGNIDADDAGVCKVHLEDRMVRLIGPHSIIGRSIIITAGEDDLGRGGHELFFTTGNAGARVWGGVVGIAASK 156          
BLAST of mRNA_P-wetherbeei_contig6863.1.2 vs. uniprot
Match: A0A2Z5VKR9_CHAMQ (Cu Zn superoxide dismutase n=1 Tax=Chattonella marina var. antiqua TaxID=859642 RepID=A0A2Z5VKR9_CHAMQ)

HSP 1 Score: 214 bits (545), Expect = 3.650e-68
Identity = 100/134 (74.63%), Postives = 114/134 (85.07%), Query Frame = 1
Query:  202 QATEDAPTILEGEIEGLRPGRHAFHVHAFADFSEGLVGGGGIFNPFGKNHGAPDDEERMAGDLGNIDVDEQGVCRVHIEDRVVKLIGPHSIIGRSLIVKAGEDDFGRGGHELSLTTGNSGARVAGGVVGIAPSK 603
            QA EDA TI++G + GL PG+H  H+H F DFS+GL   GGIFNPFGKNHGAPDDEERM GDLGNI+VDE+G  ++HIEDR+VKLIGPHSIIGRS+I+ +GEDD GRGGHELSLT GNSG RVAGGVVGIA SK
Sbjct:   22 QAQEDAATIIDGVVSGLTPGKHGIHIHVFGDFSQGLTSAGGIFNPFGKNHGAPDDEERMVGDLGNIEVDEEGQAQIHIEDRLVKLIGPHSIIGRSIIITSGEDDLGRGGHELSLTNGNSGPRVAGGVVGIASSK 155          
BLAST of mRNA_P-wetherbeei_contig6863.1.2 vs. uniprot
Match: A0A7S2HLY5_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HLY5_9STRA)

HSP 1 Score: 209 bits (533), Expect = 1.540e-66
Identity = 100/133 (75.19%), Postives = 111/133 (83.46%), Query Frame = 1
Query:  202 QATEDAPTILEGEIEGLRPGRHAFHVHAFADFSEGLVGGGGIFNPFGKNHGAPDDEERMAGDLGNIDVDEQGVCRVHIEDRVVKLIGPHSIIGRSLIVKAGEDDFGRGGHELSLTTGNSGARVAGGVVGIAPS 600
            QA ED PT +EG+IEGL PG H  H+H F DFS+GLV  GGIFNPFGKNHGAPDDEERM GDLGNI+VD QG C V +EDR+VKLIGPHS+IGRS+IVK GEDDFGRGGHELSL +GNSG R+AGG VGI  S
Sbjct:    9 QAAEDQPTRIEGKIEGLTPGLHGLHMHTFGDFSQGLVSAGGIFNPFGKNHGAPDDEERMVGDLGNIEVDAQGKCTVMLEDRLVKLIGPHSVIGRSIIVKQGEDDFGRGGHELSLVSGNSGQRLAGGFVGICQS 141          
BLAST of mRNA_P-wetherbeei_contig6863.1.2 vs. uniprot
Match: A0A7S2WW13_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WW13_9STRA)

HSP 1 Score: 207 bits (526), Expect = 5.600e-65
Identity = 97/133 (72.93%), Postives = 110/133 (82.71%), Query Frame = 1
Query:  202 QATEDAPTILEGEIEGLRPGRHAFHVHAFADFSEGLVGGGGIFNPFGKNHGAPDDEERMAGDLGNIDVDEQGVCRVHIEDRVVKLIGPHSIIGRSLIVKAGEDDFGRGGHELSLTTGNSGARVAGGVVGIAPS 600
            QA EDAPT ++G IEGL PG HA H+H F DF++GL   GGIFNPFGKNHGAPDDEERM GDLGNI+VD  G C VHIEDR+VKLIGPHS+IGRS+++K GEDD GRG H+LSL  GNSG R+AGGVVGIA S
Sbjct:   44 QAQEDAPTRIDGTIEGLTPGTHAIHIHTFGDFAQGLTSAGGIFNPFGKNHGAPDDEERMVGDLGNIEVDAAGRCTVHIEDRLVKLIGPHSVIGRSVLIKQGEDDLGRGQHDLSLVNGNSGQRIAGGVVGIASS 176          
BLAST of mRNA_P-wetherbeei_contig6863.1.2 vs. uniprot
Match: A0A8J2SRW2_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SRW2_9STRA)

HSP 1 Score: 202 bits (513), Expect = 2.500e-63
Identity = 95/133 (71.43%), Postives = 108/133 (81.20%), Query Frame = 1
Query:  202 QATEDAPTILEGEIEGLRPGRHAFHVHAFADFSEGLVGGGGIFNPFGKNHGAPDDEERMAGDLGNIDVDEQGVCRVHIEDRVVKLIGPHSIIGRSLIVKAGEDDFGRGGHELSLTTGNSGARVAGGVVGIAPS 600
            Q +E  PT+++G I GL PG H  HVH F DFS+GL   GGIFNPF +NHG P+DEERMAGDLGN++V E G C VHIEDR VKLIGPHSIIGRS++V  GEDDFG+GGHELSL+TGN G RVAGGVVGIAPS
Sbjct:   21 QPSESQPTVIDGSISGLAPGLHGIHVHIFGDFSQGLTSAGGIFNPFARNHGGPNDEERMAGDLGNLEVAEDGSCSVHIEDRHVKLIGPHSIIGRSIVVFGGEDDFGKGGHELSLSTGNPGPRVAGGVVGIAPS 153          
BLAST of mRNA_P-wetherbeei_contig6863.1.2 vs. uniprot
Match: A0A7S2MFL1_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2MFL1_9STRA)

HSP 1 Score: 200 bits (508), Expect = 2.120e-62
Identity = 93/132 (70.45%), Postives = 110/132 (83.33%), Query Frame = 1
Query:  202 QATEDAPTILEGEIEGLRPGRHAFHVHAFADFSEGLVGGGGIFNPFGKNHGAPDDEERMAGDLGNIDVDEQGVCRVHIEDRVVKLIGPHSIIGRSLIVKAGEDDFGRGGHELSLTTGNSGARVAGGVVGIAP 597
            Q +EDAPTI++GEI+GL PG+HA  VH + D ++G   GG IFNPFGKNHGAP+DEERM GDLGN+   + G   VHIED+VVKLIGPHS+IGRS++V AGEDD GRGGHELSLTTGNSGARVA GV+GI+P
Sbjct:   34 QLSEDAPTIIQGEIKGLSPGKHAISVHVYGDLTDGATSGGAIFNPFGKNHGAPEDEERMVGDLGNVITTDDGKTAVHIEDKVVKLIGPHSVIGRSIVVHAGEDDCGRGGHELSLTTGNSGARVAAGVIGISP 165          
BLAST of mRNA_P-wetherbeei_contig6863.1.2 vs. uniprot
Match: A0A7R9ZBH9_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9ZBH9_9STRA)

HSP 1 Score: 201 bits (510), Expect = 2.440e-62
Identity = 95/132 (71.97%), Postives = 113/132 (85.61%), Query Frame = 1
Query:  202 QATEDAPTILEGEIEGLRPGRHAFHVHAFADFSEGLVGGGGIFNPFGKNHGAPDDEERMAGDLGNIDVDEQGVCRVHIEDRVVKLIGPHSIIGRSLIVKAGEDDFGRGGHELSLTTGNSGARVAGGVVGIAP 597
            Q +EDA TI++GE++GL PG+HA  V+ FAD ++G  G G IFNPFGKNHGAP+DEERMAGDLGN+ V E G C VHIED+V+KLIGPHS+IGRS++V +GEDD GRGGHELSLTTGNSGARVA GV+GIAP
Sbjct:   60 QLSEDAATIIDGELKGLTPGKHAISVNTFADITQGAAGCGNIFNPFGKNHGAPEDEERMAGDLGNVLVGEDGKCLVHIEDKVLKLIGPHSVIGRSIVVYSGEDDCGRGGHELSLTTGNSGARVASGVIGIAP 191          
BLAST of mRNA_P-wetherbeei_contig6863.1.2 vs. uniprot
Match: A0A7S3JNV1_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JNV1_9STRA)

HSP 1 Score: 198 bits (504), Expect = 5.820e-62
Identity = 96/140 (68.57%), Postives = 110/140 (78.57%), Query Frame = 1
Query:  181 SFLATRMQATEDAPTILEGEIEGLRPGRHAFHVHAFADFSEGLVGGGGIFNPFGKNHGAPDDEERMAGDLGNIDVDEQGVCRVHIEDRVVKLIGPHSIIGRSLIVKAGEDDFGRGGHELSLTTGNSGARVAGGVVGIAPS 600
            S + T  Q +E++ T ++G I GL PG H  HVH F DFS+GL   GGIFNPF KNHGAPD ++RM GDLGNI+V E G C +HIED +VKLIGPHSIIGRS+I+ AGEDD GRGGHELSLTTGN G RVAGGVVGIAPS
Sbjct:   14 SGVLTLSQPSEESATRIDGTINGLTPGLHGIHVHIFGDFSQGLTSAGGIFNPFAKNHGAPDADDRMVGDLGNIEVAEDGSCTIHIEDSLVKLIGPHSIIGRSIIIFAGEDDLGRGGHELSLTTGNPGPRVAGGVVGIAPS 153          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6863.1.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z8H2_9STRA1.220e-7377.70Disproportionate superoxide radical into hydrogen ... [more]
A0A7S2UTD5_9STRA1.100e-6975.37Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
D7FW94_ECTSI4.620e-6976.12Disproportionate superoxide radical into hydrogen ... [more]
A0A2Z5VKR9_CHAMQ3.650e-6874.63Cu Zn superoxide dismutase n=1 Tax=Chattonella mar... [more]
A0A7S2HLY5_9STRA1.540e-6675.19Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S2WW13_9STRA5.600e-6572.93Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A8J2SRW2_9STRA2.500e-6371.43Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S2MFL1_9STRA2.120e-6270.45Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A7R9ZBH9_9STRA2.440e-6271.97Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
A0A7S3JNV1_9STRA5.820e-6268.57Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6863contigP-wetherbeei_contig6863:2022..3024 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog44056.XP_009038172.1
PFAMsSod_Cu
Model size606
Max annot lvl2759|Eukaryota
KEGG koko:K04565
KEGG Pathwayko04146,ko04213,ko05014,ko05016,ko05020,map04146,map04213,map05014,map05016,map05020
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.55e-61
EggNOG OGsCOG2032@1|root,KOG0441@2759|Eukaryota
Ec32 ortholog descriptioncopper/zinc superoxide dismutase
Ec32 orthologEc-00_002760.1
EC1.15.1.1
Descriptionoxidoreductase activity, acting on superoxide radicals as acceptor
Cds size606
COG categoryP
BRITEko00000,ko00001,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186942.199302-CDS-P-wetherbeei_contig6863:2021..21051683186942.199302-CDS-P-wetherbeei_contig6863:2021..2105Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6863 2022..2105 -
1683186942.2128024-CDS-P-wetherbeei_contig6863:2502..30241683186942.2128024-CDS-P-wetherbeei_contig6863:2502..3024Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6863 2503..3024 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6863.1.2prot_P-wetherbeei_contig6863.1.2Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6863 2022..3024 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6863.1.2

>prot_P-wetherbeei_contig6863.1.2 ID=prot_P-wetherbeei_contig6863.1.2|Name=mRNA_P-wetherbeei_contig6863.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=202bp
RGGGASRSDTPVAGACEACKRHIRPSICVVSGQTSFKARLIASKSHKTSS
TDGCACCACPSFLATRMQATEDAPTILEGEIEGLRPGRHAFHVHAFADFS
EGLVGGGGIFNPFGKNHGAPDDEERMAGDLGNIDVDEQGVCRVHIEDRVV
KLIGPHSIIGRSLIVKAGEDDFGRGGHELSLTTGNSGARVAGGVVGIAPS
K*
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mRNA from alignment at P-wetherbeei_contig6863:2022..3024-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6863.1.2 ID=mRNA_P-wetherbeei_contig6863.1.2|Name=mRNA_P-wetherbeei_contig6863.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1003bp|location=Sequence derived from alignment at P-wetherbeei_contig6863:2022..3024- (Phaeothamnion wetherbeei SAG_119_79)
AGGGGAGGAGGGGCTTCGAGGAGCGATACGCCTGTCGCAGGTGCGTGCGA AGCCTGCAAAAGGCACATTCGTCCTTCAATATGCGTTGTGAGTGGCCAAA CGTCCTTTAAAGCCCGTTTGATTGCTTCAAAGTCGCACAAGACATCGTCC ACCGACGGCTGCGCTTGCTGCGCTTGTCCCTCCTTTTTGGCGACACGCAT GCAGGCAACAGAGGACGCGCCAACGATCCTGGAGGGAGAGATCGAAGGCC TCCGGCCGGGTCGGCACGCCTTCCACGTCCACGCCTTCGCCGACTTCAGC GAGGGCCTGGTTGGCGGCGGTGGCATCTTTAACCCGTTCGGAAAGAACCA CGGCGCGCCGGACGACGAAGAGCGGATGGCGGGAGACCTGGGGAACATTG ACGTCGATGAGCAGGGCGTCTGCCGCGTCCACATTGAGGATCGCGTGGTG AAGCTCATCGGGCCGCACTCCATCATTGGCCGGTCGCTCATTGTCAAGGC CGGGGAGGATGACTTCGGAAGGGTGAGTGAGGGGGGCCGCGAGAGGGGGA GAGAGAAGTTTTGCTGGGACGTGGTCGGTGGAAGAACTGCCGCCTTCATT GCATTTTGTGTAAAGAGGGCGTGCCGCCGCCTCCTCAACTGCTGCATTCT TTAGCAGCGTCTGCTCAGTACATTCTTCGCTTCCTAACCGTCGCTTGTAA GGGAAGGACGGCGTGACTTTCCCTTGTAGAATTTTGACCATTTTGGGGTG ACAGCTCGTGAAAATTGCTATTCGTCTTCTCAGCGTTGGATGCATGCTCT CCCATGCCCGTTCATACCCGCTCTTTTGAGCCTGACGCCCCTCTTTCCAA TCCCAACGTGGCGGCGGCGGCGGCGGGGGTGGCGGCTACGGCAACAACGG CGGCGGCGCCTTCGGGCAGGGCGGACACGAGCTTTCGTTGACAACGGGAA ATTCGGGAGCGCGCGTGGCGGGAGGAGTAGTCGGCATTGCGCCGTCAAAG TGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6863:2022..3024-

>mRNA_P-wetherbeei_contig6863.1.2 ID=mRNA_P-wetherbeei_contig6863.1.2|Name=mRNA_P-wetherbeei_contig6863.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=606bp|location=Sequence derived from alignment at P-wetherbeei_contig6863:2022..3024- (Phaeothamnion wetherbeei SAG_119_79)
AGGGGAGGAGGGGCTTCGAGGAGCGATACGCCTGTCGCAGGTGCGTGCGA
AGCCTGCAAAAGGCACATTCGTCCTTCAATATGCGTTGTGAGTGGCCAAA
CGTCCTTTAAAGCCCGTTTGATTGCTTCAAAGTCGCACAAGACATCGTCC
ACCGACGGCTGCGCTTGCTGCGCTTGTCCCTCCTTTTTGGCGACACGCAT
GCAGGCAACAGAGGACGCGCCAACGATCCTGGAGGGAGAGATCGAAGGCC
TCCGGCCGGGTCGGCACGCCTTCCACGTCCACGCCTTCGCCGACTTCAGC
GAGGGCCTGGTTGGCGGCGGTGGCATCTTTAACCCGTTCGGAAAGAACCA
CGGCGCGCCGGACGACGAAGAGCGGATGGCGGGAGACCTGGGGAACATTG
ACGTCGATGAGCAGGGCGTCTGCCGCGTCCACATTGAGGATCGCGTGGTG
AAGCTCATCGGGCCGCACTCCATCATTGGCCGGTCGCTCATTGTCAAGGC
CGGGGAGGATGACTTCGGAAGGGGCGGACACGAGCTTTCGTTGACAACGG
GAAATTCGGGAGCGCGCGTGGCGGGAGGAGTAGTCGGCATTGCGCCGTCA
AAGTGA
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