mRNA_P-wetherbeei_contig686.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig686.3.1
Unique NamemRNA_P-wetherbeei_contig686.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig686.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig686contigP-wetherbeei_contig686:8058..8219 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FQ58
Preferred nameCHDC2
PFAMsCH,PapD-like
Model size162
Max annot lvl2759|Eukaryota
KEGG rclassRC00299
KEGG koko:K01593
KEGG ReactionR00685,R00699,R00736,R02080,R02701,R04909
KEGG Pathwayko00350,ko00360,ko00380,ko00901,ko00950,ko00965,ko01100,ko01110,ko04726,ko04728,ko05030,ko05031,ko05034,map00350,map00360,map00380,map00901,map00950,map00965,map01100,map01110,map04726,map04728,map05030,map05031,map05034
KEGG ModuleM00037,M00042
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue1.05e-07
EggNOG OGs2CBV6@1|root,2QQ4Q@2759|Eukaryota
EC4.1.1.105,4.1.1.28
Cds size153
BRITEko00000,ko00001,ko00002,ko01000,ko04147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186942.0203943-CDS-P-wetherbeei_contig686:8057..82101683186942.0203943-CDS-P-wetherbeei_contig686:8057..8210Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig686 8058..8210 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186942.037807-UTR-P-wetherbeei_contig686:8210..82191683186942.037807-UTR-P-wetherbeei_contig686:8210..8219Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig686 8211..8219 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig686.3.1prot_P-wetherbeei_contig686.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig686 8058..8210 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig686.3.1

>prot_P-wetherbeei_contig686.3.1 ID=prot_P-wetherbeei_contig686.3.1|Name=mRNA_P-wetherbeei_contig686.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=51bp
MELKNAGELPARFAIRCPTHFTAAPPRGILQPSQTIGLIISFSPAQLGPF
R
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mRNA from alignment at P-wetherbeei_contig686:8058..8219-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig686.3.1 ID=mRNA_P-wetherbeei_contig686.3.1|Name=mRNA_P-wetherbeei_contig686.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=162bp|location=Sequence derived from alignment at P-wetherbeei_contig686:8058..8219- (Phaeothamnion wetherbeei SAG_119_79)
GACATCTTAATGGAGCTCAAGAACGCCGGGGAGCTGCCGGCGCGCTTCGC
CATCCGCTGCCCTACCCACTTCACGGCGGCGCCGCCGCGCGGCATCCTCC
AGCCGTCGCAGACCATTGGCCTCATCATCTCGTTCTCCCCCGCCCAGCTC
GGCCCGTTCCGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig686:8058..8219-

>mRNA_P-wetherbeei_contig686.3.1 ID=mRNA_P-wetherbeei_contig686.3.1|Name=mRNA_P-wetherbeei_contig686.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=153bp|location=Sequence derived from alignment at P-wetherbeei_contig686:8058..8219- (Phaeothamnion wetherbeei SAG_119_79)
ATGGAGCTCAAGAACGCCGGGGAGCTGCCGGCGCGCTTCGCCATCCGCTG
CCCTACCCACTTCACGGCGGCGCCGCCGCGCGGCATCCTCCAGCCGTCGC
AGACCATTGGCCTCATCATCTCGTTCTCCCCCGCCCAGCTCGGCCCGTTC
CGG
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