mRNA_P-wetherbeei_contig6853.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6853.1.1
Unique NamemRNA_P-wetherbeei_contig6853.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig6853.1.1 vs. uniprot
Match: D7FXG2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXG2_ECTSI)

HSP 1 Score: 288 bits (738), Expect = 2.740e-84
Identity = 230/463 (49.68%), Postives = 273/463 (58.96%), Query Frame = 1
Query:   22 SVHRCLIFLGDLARYRELHSESQQKDKDWGEAERRYHEALAVVPGSGNPHNQLAVLATYADAECVAVYRYCRSLMVESPFMTARENLSLLFDKNRHKVDEDGGGWWPADDGPSPPAGGAPAGGTLGVATAGGXXVAXXXXXXXXXXXXKGKVKSTGGRGNTGALLKSFLRRFVRLHGILFSGLPEEVKEFAPIHDGAVHDFRTLLSNSAFGDALLLKMVVICIFSVTNAAAPGEISAPTARDMDGTGRGTVLANALALAFGVAAQIGRHVRTQEPTTPPAPHVXXXSGVGAGFAGGGXXXXXXXXXXXSAXAVXXXXXXXXXXXXXXXXXXXSMRDPAGGDAXXXXXXXXXGLGAPSRDSAARETLARADFVDMLCRLCNAMPDPPDGGGSLVDSDMAPLDALGRRRALREHLELRGFLPLAHVYEGRFVFDGPYADGGPDDRAGAVRIRGLKAFARALA-DP 1407
            S++RC IFLGDLARYRELH E+  KD  W  AER YH+ALAV+P SGNPHNQLAVLATY DAECV+VYRYCRSLM++SPF TA ENL+LLF+KN+ K     G   PA +G     GG         +T GG X          XXX KG      GRGNTGALLKSFLRRFVRLHG++FSG  E++++F  I + A+ DFRTLLSNSAFGDALLLKMVVICIFSVT+ A   E +                 +      G +   G                XXX G  A           XXXXXX  X  XXXXXXXXXXXXXXXXXXX+ R  A                      A +E   RA + +++ RL + +PD       +  +D  P D LGRRR L+EH+ELRGFLPLA +Y+ R+  DGP     PDD AG+VRIRGLKAF  A++ DP
Sbjct:  113 SINRCFIFLGDLARYRELHGENSVKD--WSSAERYYHQALAVLPTSGNPHNQLAVLATYTDAECVSVYRYCRSLMIDSPFQTAHENLTLLFEKNKQK-----GFGMPALEGGKESLGGGRE------STGGGGXX---------XXXSKGXXXXXXGRGNTGALLKSFLRRFVRLHGMIFSGKAEDLEDFPSIFETAIADFRTLLSNSAFGDALLLKMVVICIFSVTHVADETETAXXXXXXXXXXXXXXXXDDEAFSNSGGSVVDGXXXXXXXXXXXXXXXXXXXXGTEAAXX--------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARRGVA--------------------SVAVQEAEMRAQYWEVVQRLSSTLPDQDP----MNQADAFPGDPLGRRRPLKEHVELRGFLPLADLYKKRYAMDGPAVPAVPDDCAGSVRIRGLKAFCTAVSGDP 521          
BLAST of mRNA_P-wetherbeei_contig6853.1.1 vs. uniprot
Match: A0A6H5L3L2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3L2_9PHAE)

HSP 1 Score: 292 bits (748), Expect = 1.480e-83
Identity = 261/582 (44.85%), Postives = 306/582 (52.58%), Query Frame = 1
Query:   22 SVHRCLIFLGDLARYRELHSESQQKDKDWGEAERRYHEALAVVPGSGNPHNQLAVLATYADAECVAVYRYCRSLMVESPFMTARENLSLLFDKNRHKVDEDGGGWWPADDGPSPPAGGAPAGGTLGVATAGGXXVAXXXXXXXXXXXXKGKVKSTGGRGNTGALLKSFLRRFVRLHGILFSGLPEEVKEFAPIHDGAVHDFRTLLSNSAFGDALLLKMVVICIFSVTNAA----------------------------APGEI---------------------------SAPTARDMDGTGRGTVLANALALAFGVAAQIGRHVRTQEPTTPPAPHVXXXSGVGAGFAGGGXXXXXXXXXXXSAXAVXXXXXXXXXXXXXXXXXXXSMRD--------------------------------PAGGDAXXXXXXXXXGLGAPSR--------------------------------DSAARETLARADFVDMLCRLCNAMPDPPDGGGSLVDSDMAPLDALGRRRALREHLELRGFLPLAHVYEGRFVFDGPYADGGPDDRAGAVRIRGLKAFARALA-DP 1407
            S++RC IFLGDLARYREL  +S    KDW  AER YH+ALAV+P SGNPHNQLA+LATY DAECV+VYRYCRSLM+ESPF TA ENL+LLF+KN+       G   PA +G     GG       G  + GGXX         XXXX KGK K +GGRGNTGALLKSFL+RFVRLHG++FSG  E++++F  I + A+ DFRTLLSNSAFGDALLLKMVVICIFSVT+ A                            + G +                           +A  A   +   R   L+  LALAFGV AQIGRHVRTQEPT P         G   G     XXXXXXXXXXX  X  XXXXXXXXXXXXXXXXXXX                                    P G             L A S+                                  A +E   RA F  ++ RL + +PD       +  +D  P D LGRRR L+EH+ELRGFLPLA +Y+ R+  DGP     PDD AG+VRIRGLKAF  A++ DP
Sbjct:  257 SINRCFIFLGDLARYRELLRDSV---KDWSTAERYYHQALAVLPTSGNPHNQLALLATYTDAECVSVYRYCRSLMIESPFQTAHENLTLLFEKNKK------GFGMPALEGGKESRGG-------GRESTGGXXX--------XXXXSKGKGKGSGGRGNTGALLKSFLQRFVRLHGMIFSGKAEDLEDFPSIFETAIADFRTLLSNSAFGDALLLKMVVICIFSVTHVADEMDKAAXXXXXXXXXXXXXXDDEAFSNSGGSVVDGXXXXXXXXXXXXXXXXXXXXXXXAAAAVASKAEEVRRNARLSYPLALAFGVTAQIGRHVRTQEPTHP-------SQGAQQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTVVVYGVDSKSRPSGNQPQPRPLGSRLLGPVVLFCDWLTARSQFLCIAEEERSVGXXXXXXXXXXXXXXARRGVASVAVQEAEMRAQFWGVVQRLSSTLPDQDP----MNQADAFPGDPLGRRRPLKEHVELRGFLPLADLYKKRYAMDGPAVPAVPDDCAGSVRIRGLKAFCAAVSGDP 803          
BLAST of mRNA_P-wetherbeei_contig6853.1.1 vs. uniprot
Match: A0A835Z7T1_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7T1_9STRA)

HSP 1 Score: 233 bits (593), Expect = 1.010e-68
Identity = 130/228 (57.02%), Postives = 151/228 (66.23%), Query Frame = 1
Query:   13 LAQSVHRCLIFLGDLARYRELHSESQQKDKDWGEAERRYHEALAVVPGSGNPHNQLAVLATYADAECVAVYRYCRSLMVESPFMTARENLSLLFDKNRHKVDEDGGGWWPADDGPSPPAGGAPAGGTLGVATAGGXXVAXXXXXXXXXXXXKGKVKSTGGRGNTGALLKSFLRRFVRLHGILFSGLPEEVKEFAPIHDGAVHDFRTLLSNSAFGDALLLKMVVICIFS 696
            L+QS+HRCLIF+GDLARYRELHSE+Q  D  W  AE+ Y  ALA +P  GNPHNQ+AVLATY DAECVAVYRYCRSL++  PFMTARENL+LLF+KN+ K+ E+              A GA +G   G   +                      K  GGRGNTGALLKSFLRRFVRLHGILFS  PE + +F  +    + DFRTLL  SAFGDALLLKMVVIC F+
Sbjct:  155 LSQSIHRCLIFMGDLARYRELHSEAQTPD--WSHAEQYYQRALAAMPHGGNPHNQMAVLATYTDAECVAVYRYCRSLLIRHPFMTARENLALLFEKNKQKLAEE-------------EAAGAASGELRGRTLS--------------------NSKGAGGRGNTGALLKSFLRRFVRLHGILFSADPEGLAQFGGMFSAVICDFRTLLYYSAFGDALLLKMVVICTFT 347          
BLAST of mRNA_P-wetherbeei_contig6853.1.1 vs. uniprot
Match: W7U237_9STRA (Telomerase activating protein est1 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U237_9STRA)

HSP 1 Score: 182 bits (462), Expect = 2.450e-46
Identity = 124/285 (43.51%), Postives = 155/285 (54.39%), Query Frame = 1
Query:   19 QSVHRCLIFLGDLARYRELHSESQQKDKDWGEAERRYHEALAVVPGSGNPHNQLAVLATYADAECVAVYRYCRSLMVESPFMTARENLSLLFDKNRHKVDEDGGGWWPADDGPSPPAGGAPAGGTLGVATAGGXXVAXXXXXXXXXXXXKGKVKSTGGRGNTGALLKSFLRRFVRLHGILFSGLPEEVKEFAPIHDGA--------------VH----DFRTLLSNSAFGDALLLKMVVICIFSVTNAAAPGEISAPTARDMDGTGRGTVLANALALAFGVAAQI 819
            +S+HRCLIFLGDLARYRELHSE+ +KD  W EAE+ YH A+  +P SGNPHNQLAVLATY +AECVAVYRYCR+++  SPF TA+ENL+LLF+KNR K+             P P             +T  G  +              G +           +LKSFL RFVRLHGILF     + KE +  +D                +H    D R LL  SAFGD LLL+MV IC+FSV  +   G+     A +        VL+  L+LA GV A+I
Sbjct:  137 RSIHRCLIFLGDLARYRELHSEATRKD--WTEAEKCYHRAIDTMPTSGNPHNQLAVLATYTEAECVAVYRYCRAVLCASPFPTAKENLALLFEKNRQKI-------------PDP-------------STKDGAQI-LEEEGRIRDGLAAGTITGQQAGIARATMLKSFLLRFVRLHGILFGC--HQRKEASSANDEGGDESMFPTDEALRLLHTTLVDLRQLLKMSAFGDGLLLQMVAICVFSVVTSWREGQDPETVAEESSAQ----VLS--LSLAVGVVAEI 384          
BLAST of mRNA_P-wetherbeei_contig6853.1.1 vs. uniprot
Match: A0A3R7NMQ1_9STRA (Uncharacterized protein n=2 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7NMQ1_9STRA)

HSP 1 Score: 155 bits (392), Expect = 6.380e-39
Identity = 105/254 (41.34%), Postives = 129/254 (50.79%), Query Frame = 1
Query:   19 QSVHRCLIFLGDLARYRELHSESQQKDKDWGEAERRYHEALAVVPGSGNPHNQLAVLATYADAECVAVYRYCRSLMVESPFMTARENLSLLFDKNRHKVDEDGGGWWPADDGPSPPAGGAPAGGTLGVATAGGXXVAXXXXXXXXXXXXKGKVKSTGGRGNTGALLKSFLRRFVRLHGILFS-----GLPEEVKEFAPIHDGAVH----------DFRTLLSNSAFGDALLLKMVVICIFSVTNAAAPGEISAP 735
            QS+HRC +FLGDLARYRELHS  Q+  K++  AE  YH ALAV+P +GNPHNQLAVLATY +AE VAVYRYCRSL+   PF+TA ENL+LLF+++R +                PP                                   K KST         LKS+L R  R+HGILF+     G P   +    I    V+          D R+LL     GDALLLK+VV  IF +  A+     SAP
Sbjct:  156 QSLHRCYVFLGDLARYRELHS--QKAKKNFAAAEALYHRALAVLPENGNPHNQLAVLATYIEAETVAVYRYCRSLLTAQPFVTAEENLALLFERSRQRP-------------LVPPV------------------------TFSSSASPTSKEKST--------FLKSYLHRLTRMHGILFALSSPRGSPTAGRSSTSIAAAPVYPRDMEAVLFKDMRSLLHAGVVGDALLLKVVVTNIFCIIRASTSSSPSAP 362          
BLAST of mRNA_P-wetherbeei_contig6853.1.1 vs. uniprot
Match: A0A3F2S1P4_9STRA (Uncharacterized protein n=1 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2S1P4_9STRA)

HSP 1 Score: 156 bits (394), Expect = 4.110e-37
Identity = 106/254 (41.73%), Postives = 134/254 (52.76%), Query Frame = 1
Query:   19 QSVHRCLIFLGDLARYRELHSESQQKDKDWGEAERRYHEALAVVPGSGNPHNQLAVLATYADAECVAVYRYCRSLMVESPFMTARENLSLLFDKNRHKVDEDGGGWWPADDGPSPPAGGAPAGGTLGVATAGGXXVAXXXXXXXXXXXXKGKVKSTGGRGNTGALLKSFLRRFVRLHGILFS-----GLPEEVKEFAPIHDGAVH----------DFRTLLSNSAFGDALLLKMVVICIFSVTNAAAPGEISAP 735
            QS+HRC +FLGDLARYRELHS  Q+  K++  AE  YH ALAV+P +GNPHNQLAVLATY +AE VAVYRYCRSL+   PF+TA ENL+LLF+++R +               +PP        T   +++                    K KS        A LKS+L R  R+HGILF+     G P   +    I    V+          D R+LL     GDALLLK+VV  IF +  A+     SAP
Sbjct:  156 QSLHRCYVFLGDLARYRELHS--QKAKKNFAAAEALYHRALAVLPENGNPHNQLAVLATYIEAETVAVYRYCRSLLTAQPFVTAEENLALLFERSRQRP-------------LAPPV-------TFSSSSS-----------------PTSKEKS--------AFLKSYLHRLTRMHGILFALSSPRGSPTAGRSSTSIAVAPVYPRDMEAVLFKDMRSLLHAGVVGDALLLKVVVTNIFCIIRASTSSSSSAP 362          
BLAST of mRNA_P-wetherbeei_contig6853.1.1 vs. uniprot
Match: A0A6G0X8V0_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X8V0_9STRA)

HSP 1 Score: 154 bits (389), Expect = 4.770e-37
Identity = 99/234 (42.31%), Postives = 128/234 (54.70%), Query Frame = 1
Query:   13 LAQSVHRCLIFLGDLARYRELHSESQQKDKDWGEAERRYHEALAVVPGSGNPHNQLAVLATYADAECVAVYRYCRSLMVESPFMTARENLSLLFDKNRHKVDEDGGGWWPADDGPSPPAGGAPAGGTLGVATAGGXXVAXXXXXXXXXXXXKGKVKSTGGRGNTGALLKSFLRRFVRLHGILFSGLPEEVKEFAPIHDGAVHDFRTLLSNSAFGDALLLKMVVICIFSVTNAAA 714
            L  S+ RCLIFLGD+ARYRELHS  Q+  K++  AE  YH AL ++P +GNPHNQLAVLATY +AE +AVYRYCRSL++  PF TA ENLSLLF+++RH+          +    SPP                                   K KS        A LK+FL R  RLHGIL++   +E      +      DF+ LL+    GDAL+LK+ VI IF +T ++A
Sbjct:  132 LRHSMFRCLIFLGDIARYRELHS--QKAKKNFIAAEGYYHRALQIMPENGNPHNQLAVLATYIEAETIAVYRYCRSLLLPQPFATAEENLSLLFERSRHRALSPTSST--SISAQSPP-----------------------------------KEKS--------AFLKAFLHRLTRLHGILYAPTVDETYPLE-LEASICSDFQALLAAGVLGDALVLKLFVINIFCITRSSA 317          
BLAST of mRNA_P-wetherbeei_contig6853.1.1 vs. uniprot
Match: A0A485KJD0_9STRA (Aste57867_8107 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KJD0_9STRA)

HSP 1 Score: 154 bits (389), Expect = 5.840e-37
Identity = 97/232 (41.81%), Postives = 124/232 (53.45%), Query Frame = 1
Query:   13 LAQSVHRCLIFLGDLARYRELHSESQQKDKDWGEAERRYHEALAVVPGSGNPHNQLAVLATYADAECVAVYRYCRSLMVESPFMTARENLSLLFDKNRHKVDEDGGGWWPADDGPSPPAGGAPAGGTLGVATAGGXXVAXXXXXXXXXXXXKGKVKSTGGRGNTGALLKSFLRRFVRLHGILFSGLPEEVKEFAPIHDGAVHDFRTLLSNSAFGDALLLKMVVICIFSVTNA 708
            L  S+ RCLIFLGD+ARYRELHS  Q+  K++  AE  YH AL ++P +GNPHNQLAVLATY +AE +AVYRYCRSL++  PF TA ENL LLF+++RH+                                     +A              K KS        A LKSFL R  RLHGIL++   +EV   + +      DF  LL+    GDAL+LK+ VI IF ++ A
Sbjct:  130 LRHSMFRCLIFLGDIARYRELHS--QKAKKNFVAAEGYYHRALQIMPENGNPHNQLAVLATYIEAETIAVYRYCRSLLLPQPFSTAEENLVLLFERSRHRP------------------------------------LASSSSTASISASSPPKEKS--------AFLKSFLNRLTRLHGILYAPTADEVYP-SDLETAVCADFAALLAAGVLGDALVLKLFVINIFCISRA 314          
BLAST of mRNA_P-wetherbeei_contig6853.1.1 vs. uniprot
Match: D0NT29_PHYIT (Uncharacterized protein n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0NT29_PHYIT)

HSP 1 Score: 155 bits (392), Expect = 6.510e-37
Identity = 108/255 (42.35%), Postives = 136/255 (53.33%), Query Frame = 1
Query:   22 SVHRCLIFLGDLARYRELHSESQQKDKDWGEAERRYHEALAVVPGSGNPHNQLAVLATYADAECVAVYRYCRSLMVESPFMTARENLSLLFDKNRHKVDEDGGGWWPADDGPSPPAGGAPAGGTLGVATAGGXXVAXXXXXXXXXXXXKGKVKSTGGRGNTGALLKSFLRRFVRLHGILF------------SGLPEEVKEFAPIHDGAVH-----DFRTLLSNSAFGDALLLKMVVICIFSVTNAAAPGEISAP 735
            S+HRC +FLGDLARYRELHS  Q+  K++  AE  YH ALAV+P +GNPHNQLAVLATY +AE VAVYRYCRSL+   PF TA ENL+LLF+++R +                P A  AP   T  V+++                    K KS        A LKS+L R  R+HGILF            SG     +   P++   +      D RTLL     GDALLLK++VI IF ++ A+     SAP
Sbjct:  122 SLHRCYVFLGDLARYRELHS--QKAKKNFAAAEALYHRALAVLPENGNPHNQLAVLATYVEAETVAVYRYCRSLLTSQPFTTAEENLALLFERSRQR----------------PLA--API--TFTVSSS-----------------PSSKEKS--------AFLKSYLHRLTRMHGILFALSSPRGSPTASSGTRSNSETATPVYPRDMEAVLFKDMRTLLQAGVVGDALLLKIMVINIFCISRASDSRSPSAP 329          
BLAST of mRNA_P-wetherbeei_contig6853.1.1 vs. uniprot
Match: A0A5D6Y8T7_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y8T7_9STRA)

HSP 1 Score: 155 bits (392), Expect = 6.910e-37
Identity = 111/252 (44.05%), Postives = 134/252 (53.17%), Query Frame = 1
Query:   19 QSVHRCLIFLGDLARYRELHSESQQKDKDWGEAERRYHEALAVVPGSGNPHNQLAVLATYADAECVAVYRYCRSLMVESPFMTARENLSLLFDKNRHKVDEDGGGWWPADDGPSPPAGGAPAGGTLGVATAGGXXVAXXXXXXXXXXXXKGKVKSTGGRGNTGALLKSFLRRFVRLHGILF-------SGLPEEV--KEFAPIHDGAVHDFRTLLSNSAFGDALLLKMVVICIFSVTNAAAPGEISAPTARD 747
            QS+HRC IFLGDLARYRELHS   +K+  +  AE  YH+ALA+VP +GNPHNQLAVLATY +AE VAVYRYCRSL+   PF TA ENL+LLF++ R +                 P  G  AG  L  A++                    + KS        ALLKSFL R  RLHGILF       SG P  +  +E   +      D   LL   A GDALLLK+V+  +F V  A   G +   TA D
Sbjct:  147 QSLHRCFIFLGDLARYRELHSHKAKKN--FAAAEGFYHKALALVPANGNPHNQLAVLATYVEAETVAVYRYCRSLLTAQPFATAEENLALLFERTRQR-----------------PLVGPAAGLALTSASS-------------------ARDKS--------ALLKSFLHRLARLHGILFAAASLSSSGPPSPLYPREMEAL---LFQDLDALLRAGAVGDALLLKVVITNVFCVERARQRGPVG-DTAED 348          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6853.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FXG2_ECTSI2.740e-8449.68Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L3L2_9PHAE1.480e-8344.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835Z7T1_9STRA1.010e-6857.02Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
W7U237_9STRA2.450e-4643.51Telomerase activating protein est1 n=2 Tax=Monodop... [more]
A0A3R7NMQ1_9STRA6.380e-3941.34Uncharacterized protein n=2 Tax=Phytophthora kerno... [more]
A0A3F2S1P4_9STRA4.110e-3741.73Uncharacterized protein n=1 Tax=Phytophthora kerno... [more]
A0A6G0X8V0_9STRA4.770e-3742.31Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A485KJD0_9STRA5.840e-3741.81Aste57867_8107 protein n=1 Tax=Aphanomyces stellat... [more]
D0NT29_PHYIT6.510e-3742.35Uncharacterized protein n=2 Tax=Phytophthora infes... [more]
A0A5D6Y8T7_9STRA6.910e-3744.05Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6853contigP-wetherbeei_contig6853:302..1999 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FXG2
PFAMsEST1,EST1_DNA_bind,PIN_4
Model size1485
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue4.5e-85
EggNOG OGsKOG2162@1|root,KOG2162@2759|Eukaryota
Descriptiontelomerase RNA binding
Cds size1485
COG categoryE
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186941.6373444-CDS-P-wetherbeei_contig6853:301..13241683186941.6373444-CDS-P-wetherbeei_contig6853:301..1324Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6853 302..1324 +
1683186941.6508977-CDS-P-wetherbeei_contig6853:1537..19991683186941.6508977-CDS-P-wetherbeei_contig6853:1537..1999Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6853 1538..1999 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6853.1.1prot_P-wetherbeei_contig6853.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6853 302..1999 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6853.1.1

>prot_P-wetherbeei_contig6853.1.1 ID=prot_P-wetherbeei_contig6853.1.1|Name=mRNA_P-wetherbeei_contig6853.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=495bp
LLPCLAQSVHRCLIFLGDLARYRELHSESQQKDKDWGEAERRYHEALAVV
PGSGNPHNQLAVLATYADAECVAVYRYCRSLMVESPFMTARENLSLLFDK
NRHKVDEDGGGWWPADDGPSPPAGGAPAGGTLGVATAGGGGVAGAAAAGA
GAGAAKGKVKSTGGRGNTGALLKSFLRRFVRLHGILFSGLPEEVKEFAPI
HDGAVHDFRTLLSNSAFGDALLLKMVVICIFSVTNAAAPGEISAPTARDM
DGTGRGTVLANALALAFGVAAQIGRHVRTQEPTTPPAPHVGPHSGVGAGF
AGGGGFGGGGFGGGGSAGAVGGGGGVGGASGGGGMSGGTSMRDPAGGDAG
RGGGDADGGLGAPSRDSAARETLARADFVDMLCRLCNAMPDPPDGGGSLV
DSDMAPLDALGRRRALREHLELRGFLPLAHVYEGRFVFDGPYADGGPDDR
AGAVRIRGLKAFARALADPADARLHGPAGPLVAVDGIGVLYPAGA
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mRNA from alignment at P-wetherbeei_contig6853:302..1999+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6853.1.1 ID=mRNA_P-wetherbeei_contig6853.1.1|Name=mRNA_P-wetherbeei_contig6853.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1698bp|location=Sequence derived from alignment at P-wetherbeei_contig6853:302..1999+ (Phaeothamnion wetherbeei SAG_119_79)
CTGCTGCCGTGCTTGGCGCAGAGCGTCCACCGCTGCCTGATCTTCCTGGG GGACCTGGCTCGCTACCGGGAGCTGCACAGCGAAAGCCAGCAAAAGGACA AGGACTGGGGGGAGGCGGAGCGACGCTATCACGAGGCGCTGGCAGTGGTG CCGGGCAGCGGCAACCCGCACAACCAGCTGGCAGTGCTGGCGACCTACGC CGATGCCGAGTGCGTCGCCGTCTACCGCTACTGCCGCAGCCTGATGGTCG AGTCGCCGTTCATGACGGCCCGCGAAAACCTCTCGCTGCTCTTCGACAAG AACCGCCACAAGGTCGACGAAGACGGCGGTGGCTGGTGGCCCGCCGACGA CGGGCCCAGCCCGCCCGCCGGCGGCGCGCCCGCCGGCGGAACTCTGGGCG TTGCAACGGCAGGCGGCGGCGGCGTGGCTGGAGCTGCGGCTGCTGGGGCG GGCGCGGGCGCGGCGAAGGGCAAGGTGAAGTCGACGGGTGGGCGCGGCAA CACGGGCGCCCTGCTGAAGTCGTTTCTGCGGCGGTTCGTGCGACTGCACG GCATCCTCTTTTCGGGCTTGCCGGAGGAAGTTAAGGAGTTTGCGCCCATC CACGACGGCGCCGTCCACGACTTCCGGACGCTGCTGAGCAATTCGGCGTT CGGCGACGCGTTGCTGCTGAAAATGGTGGTCATTTGCATCTTCTCGGTGA CCAACGCCGCTGCACCGGGGGAAATCTCGGCGCCGACGGCGCGCGACATG GACGGCACAGGCCGCGGGACTGTTCTAGCCAATGCCCTGGCGCTGGCGTT CGGCGTGGCAGCACAGATCGGGAGGCACGTGCGCACACAGGAGCCGACGA CGCCTCCAGCGCCGCATGTAGGGCCGCACAGCGGCGTCGGCGCAGGTTTT GCTGGCGGCGGCGGCTTTGGCGGCGGCGGCTTTGGCGGCGGCGGGAGCGC TGGTGCTGTGGGCGGAGGCGGCGGCGTTGGCGGCGCTTCTGGTGGCGGCG GCATGAGCGGCGGCACGTCCATGGTGCGGGAGGCGCGGGCGAGTTCAGGC ATCGGCGGCGGCCCATACGCGGGCAGCAGCGTTGCTACTGCTGCAACTGG CCCCGGTGGCGGCGGCGGCGGAGGCGGCGGGAAGGTGGGTCACCAGCCGC AGCCCCGTCCGCTCGGTTCTCGCCTCTTGGGCCCGGTGGTCCTTTTCTGC GACTGGCTGCTGGCCCACAATTCCTTTTTGCGGCAGCGCGACCCGGCTGG AGGCGACGCTGGCCGCGGCGGCGGCGACGCTGACGGCGGCCTCGGCGCTC CGTCGCGCGACTCGGCGGCCCGCGAGACGCTGGCGCGGGCCGATTTTGTC GACATGCTCTGTCGGCTGTGCAACGCCATGCCGGACCCGCCGGATGGTGG TGGCTCCCTCGTGGACTCGGACATGGCGCCACTGGACGCACTCGGACGCC GCCGTGCCCTCCGGGAGCACCTGGAGCTGCGCGGCTTTTTGCCGCTTGCG CATGTCTATGAGGGGCGCTTCGTCTTCGACGGTCCGTATGCGGACGGCGG GCCGGATGACCGCGCTGGAGCCGTGCGGATCCGCGGTTTGAAGGCGTTTG CGCGGGCGCTGGCGGACCCGGCGGACGCGCGGCTGCACGGTCCGGCGGGG CCGCTCGTGGCGGTGGACGGGATTGGGGTGCTCTACCCGGCGGGCGCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6853:302..1999+

>mRNA_P-wetherbeei_contig6853.1.1 ID=mRNA_P-wetherbeei_contig6853.1.1|Name=mRNA_P-wetherbeei_contig6853.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1485bp|location=Sequence derived from alignment at P-wetherbeei_contig6853:302..1999+ (Phaeothamnion wetherbeei SAG_119_79)
CTGCTGCCGTGCTTGGCGCAGAGCGTCCACCGCTGCCTGATCTTCCTGGG
GGACCTGGCTCGCTACCGGGAGCTGCACAGCGAAAGCCAGCAAAAGGACA
AGGACTGGGGGGAGGCGGAGCGACGCTATCACGAGGCGCTGGCAGTGGTG
CCGGGCAGCGGCAACCCGCACAACCAGCTGGCAGTGCTGGCGACCTACGC
CGATGCCGAGTGCGTCGCCGTCTACCGCTACTGCCGCAGCCTGATGGTCG
AGTCGCCGTTCATGACGGCCCGCGAAAACCTCTCGCTGCTCTTCGACAAG
AACCGCCACAAGGTCGACGAAGACGGCGGTGGCTGGTGGCCCGCCGACGA
CGGGCCCAGCCCGCCCGCCGGCGGCGCGCCCGCCGGCGGAACTCTGGGCG
TTGCAACGGCAGGCGGCGGCGGCGTGGCTGGAGCTGCGGCTGCTGGGGCG
GGCGCGGGCGCGGCGAAGGGCAAGGTGAAGTCGACGGGTGGGCGCGGCAA
CACGGGCGCCCTGCTGAAGTCGTTTCTGCGGCGGTTCGTGCGACTGCACG
GCATCCTCTTTTCGGGCTTGCCGGAGGAAGTTAAGGAGTTTGCGCCCATC
CACGACGGCGCCGTCCACGACTTCCGGACGCTGCTGAGCAATTCGGCGTT
CGGCGACGCGTTGCTGCTGAAAATGGTGGTCATTTGCATCTTCTCGGTGA
CCAACGCCGCTGCACCGGGGGAAATCTCGGCGCCGACGGCGCGCGACATG
GACGGCACAGGCCGCGGGACTGTTCTAGCCAATGCCCTGGCGCTGGCGTT
CGGCGTGGCAGCACAGATCGGGAGGCACGTGCGCACACAGGAGCCGACGA
CGCCTCCAGCGCCGCATGTAGGGCCGCACAGCGGCGTCGGCGCAGGTTTT
GCTGGCGGCGGCGGCTTTGGCGGCGGCGGCTTTGGCGGCGGCGGGAGCGC
TGGTGCTGTGGGCGGAGGCGGCGGCGTTGGCGGCGCTTCTGGTGGCGGCG
GCATGAGCGGCGGCACGTCCATGCGCGACCCGGCTGGAGGCGACGCTGGC
CGCGGCGGCGGCGACGCTGACGGCGGCCTCGGCGCTCCGTCGCGCGACTC
GGCGGCCCGCGAGACGCTGGCGCGGGCCGATTTTGTCGACATGCTCTGTC
GGCTGTGCAACGCCATGCCGGACCCGCCGGATGGTGGTGGCTCCCTCGTG
GACTCGGACATGGCGCCACTGGACGCACTCGGACGCCGCCGTGCCCTCCG
GGAGCACCTGGAGCTGCGCGGCTTTTTGCCGCTTGCGCATGTCTATGAGG
GGCGCTTCGTCTTCGACGGTCCGTATGCGGACGGCGGGCCGGATGACCGC
GCTGGAGCCGTGCGGATCCGCGGTTTGAAGGCGTTTGCGCGGGCGCTGGC
GGACCCGGCGGACGCGCGGCTGCACGGTCCGGCGGGGCCGCTCGTGGCGG
TGGACGGGATTGGGGTGCTCTACCCGGCGGGCGCG
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