mRNA_P-wetherbeei_contig684.2.3 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig684.2.3
Unique NamemRNA_P-wetherbeei_contig684.2.3
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig684.2.3 vs. uniprot
Match: D8LK57_ECTSI (PWI domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK57_ECTSI)

HSP 1 Score: 178 bits (452), Expect = 3.940e-50
Identity = 86/131 (65.65%), Postives = 112/131 (85.50%), Query Frame = 1
Query:    1 MSSNFYRGTQVGQDSKYGEADKKVMKKMKFARCLQTKVEISKVNMDVMGKWISERITALLGVEDEIVVGTCINFLTAESTPDPKKLQLQMTVFLEKATGSFMEELWTLLLDAQASRGGIPSAFLEQKKREL 393
            MSSNF+RGT   QDS++G+A+KK++++ KF++ L+ KV + KVNMDVM +WI++RIT+LLG ED+IVVGTCIN+L+ E   DPKKLQLQ+T FLEK+TG FMEELW LL+DAQ+S GGIPSAFL+ KK+EL
Sbjct:    1 MSSNFFRGTTAEQDSRWGDAEKKLLRRTKFSKVLEQKVNMKKVNMDVMQRWIAQRITSLLGFEDDIVVGTCINYLSEEGKLDPKKLQLQLTGFLEKSTGMFMEELWGLLVDAQSSLGGIPSAFLQDKKQEL 131          
BLAST of mRNA_P-wetherbeei_contig684.2.3 vs. uniprot
Match: A0A6H5KM37_9PHAE (PWI domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KM37_9PHAE)

HSP 1 Score: 178 bits (451), Expect = 1.740e-49
Identity = 85/131 (64.89%), Postives = 112/131 (85.50%), Query Frame = 1
Query:    1 MSSNFYRGTQVGQDSKYGEADKKVMKKMKFARCLQTKVEISKVNMDVMGKWISERITALLGVEDEIVVGTCINFLTAESTPDPKKLQLQMTVFLEKATGSFMEELWTLLLDAQASRGGIPSAFLEQKKREL 393
            MSSNF+RGT   QDS++G+A+KK++++ KF++ L+ KV + KVNMDVM +WI++RIT+LLG ED+IVVGTC+N+L+ E   DPKKLQLQ+T FLEK+TG FMEELW LL+DAQ+S GGIPSAFL+ KK+EL
Sbjct:    1 MSSNFFRGTTAEQDSRWGDAEKKLLRRTKFSKVLEQKVNMKKVNMDVMQRWIAQRITSLLGFEDDIVVGTCVNYLSEEGKLDPKKLQLQLTGFLEKSTGMFMEELWGLLVDAQSSLGGIPSAFLQDKKQEL 131          
BLAST of mRNA_P-wetherbeei_contig684.2.3 vs. uniprot
Match: A0A7S2SU80_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SU80_9STRA)

HSP 1 Score: 159 bits (402), Expect = 1.840e-42
Identity = 80/132 (60.61%), Postives = 99/132 (75.00%), Query Frame = 1
Query:    1 MSSNFYRGTQVGQDSKYGEADKKVMKKMKFARCLQTKVEISKVNMDVMGKWISERITALLGVEDEIVVGTCINFLTAESTPDPKKLQLQMTVFLEKATGSFMEELWTLLLDAQASRGGIPSAFLEQKKRELA 396
            MSS F+RGT V QDS++G  +K++MKKMKFA  L TKV+  KVN+ VM +WI+ER+T LLG EDEIV+G  INFL A   P PK+LQL +T FLEK  G F+EELWTLL  AQ ++ GIP  F+E+KK ELA
Sbjct:    1 MSSGFFRGTSVDQDSRWGNTNKRLMKKMKFAAVLGTKVDTGKVNLPVMNRWITERLTQLLGFEDEIVIGLVINFLEANKHPAPKQLQLDVTGFLEKKAGQFVEELWTLLAAAQENKNGIPPQFIEKKKEELA 132          
BLAST of mRNA_P-wetherbeei_contig684.2.3 vs. uniprot
Match: A0A7S1U0L0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U0L0_9STRA)

HSP 1 Score: 145 bits (366), Expect = 3.440e-37
Identity = 74/141 (52.48%), Postives = 98/141 (69.50%), Query Frame = 1
Query:    1 MSSNFYRGTQVGQDSKYGEADKKVMKKMKF-ARCLQTKVEISKVNMDVMGKWISERITALLGVEDEIVVGTCINFLTAESTPDPKKLQLQMTVFLEKATGSFMEELWTLLLDAQASRGGIPSAFLEQKKRELAALREAEQK 420
            M+SNFYRG    QDS++G  DK++MKKM F A   + KV++ KVN++VM +W+ E +  +LG ED+IV G     L A   PDPK +QLQ+T FLEK    FM+ELWTLL+DAQ S GGIPSAF+ QKK ++    EA++K
Sbjct:   46 MASNFYRGLSADQDSRWGSTDKRLMKKMNFDAALFKQKVDLKKVNIEVMKQWVKESVNDILGFEDDIVTGLVDAMLEAGDRPDPKNMQLQLTGFLEKKAAPFMQELWTLLVDAQTSPGGIPSAFIAQKKEQMREAEEAKKK 186          
BLAST of mRNA_P-wetherbeei_contig684.2.3 vs. uniprot
Match: K8Z0N4_NANGC (Serine/arginine repetitive matrix protein 1 n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8Z0N4_NANGC)

HSP 1 Score: 136 bits (342), Expect = 2.080e-35
Identity = 70/133 (52.63%), Postives = 97/133 (72.93%), Query Frame = 1
Query:    1 MSSNFYRGTQVGQDSKYGEADKKVMKKMKFARCLQTKVEISKVNMDVMGKWISERITALLGVEDEIVVGTCINFLTAESTPDPKKLQLQMTVFLEKATGS-FMEELWTLLLDAQASRGGIPSAFLEQKKRELA 396
            M+S F+RGT   QD+++G A+K++MKKMKFA  L  KV++ KVNMDV+ +WI++++   LG E+E+ +G  IN+L  ES  D KKLQLQ T F+ K   S F+ ELW LL+DAQ +  GIP+AF+E KK+ELA
Sbjct:    1 MASGFFRGTTADQDARFGNAEKRLMKKMKFASILSEKVDLRKVNMDVIKRWITDQLVEFLGFEEEVTIGLVINYL--ESDTDAKKLQLQCTEFIGKNKASTFVTELWALLVDAQRNPSGIPTAFIEAKKKELA 131          
BLAST of mRNA_P-wetherbeei_contig684.2.3 vs. uniprot
Match: A0A836CG50_9STRA (PWI domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CG50_9STRA)

HSP 1 Score: 132 bits (333), Expect = 1.540e-34
Identity = 73/120 (60.83%), Postives = 89/120 (74.17%), Query Frame = 1
Query:   61 DKKVMKKMK----FARCLQTKVEISKVNMDVMGKWISERITALLGVEDEIVVGTCINFLTAESTP---DPKKLQLQMTVFLEKATGSFMEELWTLLLDAQASRGGIPSAFLEQKKRELAA 399
            DK +MKKM     F++ L+ KV++ KVN+ VM KWI+ +IT LLG ED+IV+GT INFL A +     DP+KLQLQ+T FLEKAT  FMEELW LL DAQA  GGIP+AFLEQKK E+ A
Sbjct:    1 DKALMKKMAKADMFSKTLELKVDMKKVNLPVMSKWITGKITQLLGYEDDIVIGTAINFLEASADSARLDPRKLQLQLTGFLEKATRPFMEELWALLADAQACPGGIPAAFLEQKKEEMLA 120          
BLAST of mRNA_P-wetherbeei_contig684.2.3 vs. uniprot
Match: A0A1Y1WGB0_9FUNG (PWI domain-containing protein n=1 Tax=Linderina pennispora TaxID=61395 RepID=A0A1Y1WGB0_9FUNG)

HSP 1 Score: 133 bits (335), Expect = 4.010e-34
Identity = 71/158 (44.94%), Postives = 102/158 (64.56%), Query Frame = 1
Query:    1 MSSNFYRGTQVGQDSKYGEADKKVMKKMKFARCLQTKVEISKVNMDVMGKWISERITALLGVEDEIVVGTCINFLTAESTPDPKKLQLQMTVFLEKATGSFMEELWTLLLDAQASRGGIPSAFLEQKKRELAALREAEQKRQAEFQKCAKAVGPAAGA 474
            M+  F+RGT + QD ++G+A KK+MK M F+  L+ KV++SKVNMDV+  WI+  +  LLGVEDE++    +N L   ++PDPK +Q+ +T FLE  T  FM++LW+LLL+AQ   GGIP + ++QK  +L   RE E          AK +G  AGA
Sbjct:    1 MAGGFFRGTNIDQDLRFGDASKKLMKDMGFSDLLKRKVDMSKVNMDVIKPWIATTVNELLGVEDEVLFEYVVNLLGESNSPDPKAIQVNLTGFLESKTQGFMQDLWSLLLEAQDCTGGIPESLVKQKMDQLQKKREME----------AKILGALAGA 148          
BLAST of mRNA_P-wetherbeei_contig684.2.3 vs. uniprot
Match: A0A397E1U4_9STRA (PWI domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397E1U4_9STRA)

HSP 1 Score: 132 bits (331), Expect = 1.790e-33
Identity = 70/141 (49.65%), Postives = 98/141 (69.50%), Query Frame = 1
Query:    7 SNFYRGTQVGQDSKYGEADKKVMKKMKFARCLQTKVEISKVNMDVMGKWISERITALLGVEDEIVVGTCINFLTAESTPDP---KKLQLQMTVFLEKATGSFMEELWTLLLDAQASRGGIPSAFLEQKKRELAALREAEQK 420
            +NF+RGT + QDS++    KK++ KM+F  C + KVEISKVN +VM +WI+E+IT +LG ED+IVV T IN L      DP   K++Q+ +T FLE    S+MEELWTLL+ AQ +  GIP  FL++KK+E+ A R+ + K
Sbjct:    5 ANFFRGTTLDQDSRFFNKHKKLLAKMEFPTCFKHKVEISKVNKEVMHQWITEKITQVLGFEDDIVVSTAINLLEPTHPLDPLNPKEMQVALTGFLEGDAASYMEELWTLLVSAQENPTGIPQVFLDKKKKEMEAKRDQDAK 145          
BLAST of mRNA_P-wetherbeei_contig684.2.3 vs. uniprot
Match: A0A024UKH4_9STRA (PWI domain-containing protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UKH4_9STRA)

HSP 1 Score: 135 bits (339), Expect = 1.840e-32
Identity = 80/169 (47.34%), Postives = 109/169 (64.50%), Query Frame = 1
Query:    7 SNFYRGTQVGQDSKYGEADKKVMKKMKFARCLQTKVEISKVNMDVMGKWISERITALLGVEDEIVVGTCINFL--TAESTP-DPKKLQLQMTVFLEKATGSFMEELWTLLLDAQASRGGIPSAFLEQKKRELAALREAEQKRQAEFQKCAKAVGPAAGAKKRLRSQHRR 504
            +NF+RGT + QDS++    KK++ +M+F  C + KV+ISKVN +VM +WI+E+IT +LG EDEIVV T IN L  T    P DPK++Q+ +T FLE    SFMEELW LL+ AQ +  GIP  FL++KK+E+ A RE + K +    K  +A  PA    K  R   RR
Sbjct:    5 ANFFRGTTLDQDSRFFNKHKKLLARMEFPACFKHKVDISKVNKEVMHQWITEKITQVLGFEDEIVVSTAINLLEPTHHLDPLDPKEMQVALTGFLEGDASSFMEELWNLLVSAQENPTGIPQVFLDKKKKEMEAKREKDAKDRERLAKRVEAFQPAPSNAKTSRFSDRR 173          
BLAST of mRNA_P-wetherbeei_contig684.2.3 vs. uniprot
Match: A0A6G0X5E9_9STRA (PWI domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X5E9_9STRA)

HSP 1 Score: 134 bits (337), Expect = 5.020e-32
Identity = 71/139 (51.08%), Postives = 98/139 (70.50%), Query Frame = 1
Query:    7 SNFYRGTQVGQDSKYGEADKKVMKKMKFARCLQTKVEISKVNMDVMGKWISERITALLGVEDEIVVGTCINFLTAE---STPDPKKLQLQMTVFLEKATGSFMEELWTLLLDAQASRGGIPSAFLEQKKRELAALREAE 414
            +NF+RGT + QDS++    KK+M+KM F +C + KV+ISKVN +VM +WI+E+IT LLG ED+IVV T IN L         +PK++Q+ +T FLE    +FM+ELWTLLL AQ +  GIP  FL++KK+E+ A RE E
Sbjct:    5 ANFFRGTTLDQDSRFFNKHKKLMEKMDFPKCFKHKVDISKVNKEVMNQWITEKITELLGFEDDIVVSTAINLLEPPHHLEALNPKEMQVALTGFLEGDAYAFMDELWTLLLSAQENPTGIPQVFLDKKKKEMEAKREKE 143          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig684.2.3 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LK57_ECTSI3.940e-5065.65PWI domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KM37_9PHAE1.740e-4964.89PWI domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A7S2SU80_9STRA1.840e-4260.61Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S1U0L0_9STRA3.440e-3752.48Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
K8Z0N4_NANGC2.080e-3552.63Serine/arginine repetitive matrix protein 1 n=1 Ta... [more]
A0A836CG50_9STRA1.540e-3460.83PWI domain-containing protein (Fragment) n=1 Tax=T... [more]
A0A1Y1WGB0_9FUNG4.010e-3444.94PWI domain-containing protein n=1 Tax=Linderina pe... [more]
A0A397E1U4_9STRA1.790e-3349.65PWI domain-containing protein n=1 Tax=Aphanomyces ... [more]
A0A024UKH4_9STRA1.840e-3247.34PWI domain-containing protein n=2 Tax=Aphanomyces ... [more]
A0A6G0X5E9_9STRA5.020e-3251.08PWI domain-containing protein n=1 Tax=Aphanomyces ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig684contigP-wetherbeei_contig684:2346..3958 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LK57
Preferred nameSRRM1
PFAMsPWI
Model size1097
Max annot lvl2759|Eukaryota
KEGG koko:K13171
KEGG Pathwayko03013,ko03015,map03013,map03015
KEGG ModuleM00430
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000375,GO:0000377,GO:0000381,GO:0000398,GO:0001654,GO:0003006,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006397,GO:0006403,GO:0006405,GO:0006406,GO:0006611,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0007275,GO:0007423,GO:0007530,GO:0007548,GO:0008104,GO:0008150,GO:0008152,GO:0008380,GO:0009987,GO:0010467,GO:0010468,GO:0010941,GO:0010942,GO:0015031,GO:0015833,GO:0015931,GO:0016070,GO:0016071,GO:0016363,GO:0016604,GO:0016607,GO:0018993,GO:0019219,GO:0019222,GO:0022414,GO:0031123,GO:0031124,GO:0031323,GO:0031503,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0033036,GO:0034399,GO:0034613,GO:0034641,GO:0035145,GO:0042752,GO:0042886,GO:0043067,GO:0043068,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043484,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0045184,GO:0045292,GO:0046483,GO:0046907,GO:0048024,GO:0048513,GO:0048518,GO:0048522,GO:0048608,GO:0048731,GO:0048749,GO:0048806,GO:0048856,GO:0050657,GO:0050658,GO:0050684,GO:0050789,GO:0050794,GO:0051028,GO:0051168,GO:0051169,GO:0051171,GO:0051179,GO:0051234,GO:0051236,GO:0051252,GO:0051641,GO:0051649,GO:0060255,GO:0061458,GO:0065007,GO:0070013,GO:0070727,GO:0071013,GO:0071166,GO:0071426,GO:0071427,GO:0071702,GO:0071704,GO:0071705,GO:0080090,GO:0090304,GO:1901360,GO:1902494,GO:1903311,GO:1990904
Exons4
Evalue6.45e-51
EggNOG OGsKOG2146@1|root,KOG2146@2759|Eukaryota
Ec32 ortholog descriptionPWI domain
Ec32 orthologEc-06_008250.1
DescriptionmRNA processing
Cds size1095
COG categoryS
BRITEko00000,ko00001,ko00002,ko03019,ko03041
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186941.1216192-CDS-P-wetherbeei_contig684:2345..29991683186941.1216192-CDS-P-wetherbeei_contig684:2345..2999Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig684 2346..2999 -
1683186941.1435945-CDS-P-wetherbeei_contig684:3165..33721683186941.1435945-CDS-P-wetherbeei_contig684:3165..3372Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig684 3166..3372 -
1683186941.1543322-CDS-P-wetherbeei_contig684:3543..36661683186941.1543322-CDS-P-wetherbeei_contig684:3543..3666Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig684 3544..3666 -
1683186941.164998-CDS-P-wetherbeei_contig684:3847..39581683186941.164998-CDS-P-wetherbeei_contig684:3847..3958Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig684 3848..3958 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig684.2.3prot_P-wetherbeei_contig684.2.3Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig684 2346..3958 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig684.2.3

>prot_P-wetherbeei_contig684.2.3 ID=prot_P-wetherbeei_contig684.2.3|Name=mRNA_P-wetherbeei_contig684.2.3|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=365bp
MSSNFYRGTQVGQDSKYGEADKKVMKKMKFARCLQTKVEISKVNMDVMGK
WISERITALLGVEDEIVVGTCINFLTAESTPDPKKLQLQMTVFLEKATGS
FMEELWTLLLDAQASRGGIPSAFLEQKKRELAALREAEQKRQAEFQKCAK
AVGPAAGAKKRLRSQHRRWQWHRRRMWRRVSNQPTRRGRAAVTGKRPRSL
PLRWTPTIRRRRRLQAARKQRPFQRRKNRRLPPLRRCRESGAGRLLGRKS
ASIAAAAGTAAATPVAMVAENTGAADMAAAMAVTVTALIGIAAATGTAGA
TAADPAAVPAPAATGTGRGRGLDGVGSVAGAVPFPDRRTLGGDTGISIRE
TAAGGIGIAIPPRAT
back to top

mRNA from alignment at P-wetherbeei_contig684:2346..3958-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig684.2.3 ID=mRNA_P-wetherbeei_contig684.2.3|Name=mRNA_P-wetherbeei_contig684.2.3|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1613bp|location=Sequence derived from alignment at P-wetherbeei_contig684:2346..3958- (Phaeothamnion wetherbeei SAG_119_79)
ATGAGCAGCAACTTCTATCGAGGAACCCAAGTGGGCCAGGACAGCAAGTA TGGCGAAGCGGATAAGAAAGTGATGAAGAAAATGAAGTTTGCTCGATGCC TCCAGACGAAGGTGAGCGGCGCCAAACGCTCCGAGCCTTCTTTCATATGT ATATATATTCAATATCCTCGGCCGAATCTTGGACGACTCTCGACTGCTGC ACGTCTCTTAAGACGCCAATCCTGAGACCTTCAAAATCCTCCCCTCGTTC GCCTCTCTGAACACCTCGTTCGCTTTCTTTTCTCCGCAACAGGTGGAAAT CAGCAAGGTGAACATGGACGTGATGGGAAAGTGGATTAGCGAGCGCATCA CCGCGTTGCTCGGAGTTGAGGACGAGATCGTGGTGGGCACCTGCATCAAC TTCCTCACCGCAGAGGTCAGCTCTCATGCTGCTTCCGCATCTTTTGCGTC CCGGCCCATTGCTAGAGCTGGGAAGCGATCTTTCTTATCCAAAGCCTGCC GATTTCAATTTCCCATTTTTATCTATCAAGAACGGTCCCCTCATCCCGAC TGTGTGCCGCCGCCGCTGCTTACCCACCCCTGACAGAGCACACCTGACCC GAAGAAGCTGCAGCTTCAGATGACCGTCTTCCTCGAAAAGGCGACGGGCT CCTTCATGGAGGAGCTGTGGACGCTGTTGCTCGATGCGCAGGCCAGCCGT GGCGGCATCCCCTCGGCCTTTCTGGAGCAGAAGAAGCGCGAGTTGGCGGC GCTGCGCGAGGCGGAACAGAAGCGCCAGGCCGAATTTCAGAAGGTTCTCG CCATGCAGCACGTCGCGGCGCAGCGGGCTGTGCTGGGGCTGGCCGGTGGC AGCGGTGCGGCTTTGGCACCGCCACCGCCGCCGCCGGCAGGAGCGGGGGC GGGTGTGGCGGCAAGAGAGGCGACGGGGGTAGGCGGCGGGGCTGTCGCGG CGCAGAGAGTGCGCAAAGGCGGTCGGGCCAGCCGCTGGGGCCAAGAAGCG GTTGCGTTCACAACACCGGCGATGGCAGTGGCACCGCCGGAGAATGTGGA GGCGCGTGTCCAACCAGCCGACGCGGCGGGGCAGAGCGGCTGTAACGGGA AAGCGGCCGCGCAGCCTGCCGCTGCGATGGACGCCGACGATTCGAAGGCG GCGCCGGCTGCAGGCAGCAAGGAAGCAGCGGCCATTCCAGCGGCGGAAAA ACCGGAGGCTGCCGCCGCTGCGGAGATGCAGGGAAAGCGGCGCCGGGAGG CTTCTCGGTCGGAAGAGCGCATCAATCGCGGCGGCAGCAGGGACTGCAGC AGCAACGCCGGTCGCGATGGTGGCGGAAAACACAGGAGCGGCAGATATGG CAGCGGCAATGGCCGTGACGGTGACCGCTCTGATCGGCATAGCCGCAGCG ACGGGTACCGCAGGCGCAACCGCAGCCGATCCGGCAGCCGTTCCCGCTCC CGCAGCAACGGGCACCGGGAGAGGGAGAGGTCTGGACGGCGTGGGGAGCG TCGCCGGAGCAGTTCCGTTTCCCGATCGGCGGACTCTGGGCGGCGACACC GGCATCTCGATTCGCGAGACAGCGGCCGGCGGGATCGGGATCGCGATTCC GCCTCGCGCCACC
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig684:2346..3958-

>mRNA_P-wetherbeei_contig684.2.3 ID=mRNA_P-wetherbeei_contig684.2.3|Name=mRNA_P-wetherbeei_contig684.2.3|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1095bp|location=Sequence derived from alignment at P-wetherbeei_contig684:2346..3958- (Phaeothamnion wetherbeei SAG_119_79)
ATGAGCAGCAACTTCTATCGAGGAACCCAAGTGGGCCAGGACAGCAAGTA
TGGCGAAGCGGATAAGAAAGTGATGAAGAAAATGAAGTTTGCTCGATGCC
TCCAGACGAAGGTGGAAATCAGCAAGGTGAACATGGACGTGATGGGAAAG
TGGATTAGCGAGCGCATCACCGCGTTGCTCGGAGTTGAGGACGAGATCGT
GGTGGGCACCTGCATCAACTTCCTCACCGCAGAGAGCACACCTGACCCGA
AGAAGCTGCAGCTTCAGATGACCGTCTTCCTCGAAAAGGCGACGGGCTCC
TTCATGGAGGAGCTGTGGACGCTGTTGCTCGATGCGCAGGCCAGCCGTGG
CGGCATCCCCTCGGCCTTTCTGGAGCAGAAGAAGCGCGAGTTGGCGGCGC
TGCGCGAGGCGGAACAGAAGCGCCAGGCCGAATTTCAGAAGTGCGCAAAG
GCGGTCGGGCCAGCCGCTGGGGCCAAGAAGCGGTTGCGTTCACAACACCG
GCGATGGCAGTGGCACCGCCGGAGAATGTGGAGGCGCGTGTCCAACCAGC
CGACGCGGCGGGGCAGAGCGGCTGTAACGGGAAAGCGGCCGCGCAGCCTG
CCGCTGCGATGGACGCCGACGATTCGAAGGCGGCGCCGGCTGCAGGCAGC
AAGGAAGCAGCGGCCATTCCAGCGGCGGAAAAACCGGAGGCTGCCGCCGC
TGCGGAGATGCAGGGAAAGCGGCGCCGGGAGGCTTCTCGGTCGGAAGAGC
GCATCAATCGCGGCGGCAGCAGGGACTGCAGCAGCAACGCCGGTCGCGAT
GGTGGCGGAAAACACAGGAGCGGCAGATATGGCAGCGGCAATGGCCGTGA
CGGTGACCGCTCTGATCGGCATAGCCGCAGCGACGGGTACCGCAGGCGCA
ACCGCAGCCGATCCGGCAGCCGTTCCCGCTCCCGCAGCAACGGGCACCGG
GAGAGGGAGAGGTCTGGACGGCGTGGGGAGCGTCGCCGGAGCAGTTCCGT
TTCCCGATCGGCGGACTCTGGGCGGCGACACCGGCATCTCGATTCGCGAG
ACAGCGGCCGGCGGGATCGGGATCGCGATTCCGCCTCGCGCCACC
back to top