mRNA_P-wetherbeei_contig6837.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
|
Overview
Homology
BLAST of mRNA_P-wetherbeei_contig6837.1.1 vs. uniprot
Match: A0A6N2MD82_SALVM (Integrase catalytic domain-containing protein n=1 Tax=Salix viminalis TaxID=40686 RepID=A0A6N2MD82_SALVM) HSP 1 Score: 59.3 bits (142), Expect = 6.300e-7 Identity = 31/65 (47.69%), Postives = 41/65 (63.08%), Query Frame = -1
Query: 88 HMAAAKRCLRYIVGTRSLGIVYCRGAAGARPVLTGYSDANMAGNFDNGRSTTGDCHL---PAVRW 273
HMAAAKR LRY++GT+ LG+ Y R A G L Y+D+N G+ ++ RST+G L AV W
Sbjct: 1101 HMAAAKRVLRYVMGTKDLGVFYRRNAGGTENELEVYTDSNYTGDVEDRRSTSGYVFLLSGGAVAW 1165
BLAST of mRNA_P-wetherbeei_contig6837.1.1 vs. uniprot
Match: Q8SAW7_ORYSJ (Retrotransposon protein, putative, Ty1-copia subclass n=2 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=Q8SAW7_ORYSJ) HSP 1 Score: 58.5 bits (140), Expect = 1.150e-6 Identity = 31/70 (44.29%), Postives = 45/70 (64.29%), Query Frame = -1
Query: 64 HMAAAKRCLRYIVGTRSLGIVYCRGAAGARPVLTGYSDANMAGNFDNGRSTTGDCHLPAVRWGGIVFESA 273
H+AA +R LRY+ GTR GI + GA A P+L GYSD+++AG+ D +ST+G V G I ++S+
Sbjct: 1091 HLAAVRRILRYVAGTRCWGIRFGPGARCALPMLVGYSDSDLAGDPDERKSTSGQIFF--VNGGPITWQSS 1158
BLAST of mRNA_P-wetherbeei_contig6837.1.1 vs. uniprot
Match: A0A392NGD8_9FABA (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Trifolium medium TaxID=97028 RepID=A0A392NGD8_9FABA) HSP 1 Score: 57.4 bits (137), Expect = 1.780e-6 Identity = 28/54 (51.85%), Postives = 40/54 (74.07%), Query Frame = -1
Query: 115 VHMAAAKRCLRYIVGTRSLGIVYCRGAAGARPVLTGYSDANMAGNFDNGRSTTG 276
+H AAAKR LRY+ GT SLG++Y +G GA L G++D++ AG+ ++ RSTTG
Sbjct: 109 LHYAAAKRILRYLKGTMSLGLLYKKGVKGAVQSLQGWTDSDYAGDTNDRRSTTG 162
BLAST of mRNA_P-wetherbeei_contig6837.1.1 vs. uniprot
Match: C7J163_ORYSJ (Os04g0196500 protein n=1 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=C7J163_ORYSJ) HSP 1 Score: 57.8 bits (138), Expect = 2.010e-6 Identity = 29/70 (41.43%), Postives = 45/70 (64.29%), Query Frame = -1
Query: 64 HMAAAKRCLRYIVGTRSLGIVYCRGAAGARPVLTGYSDANMAGNFDNGRSTTGDCHLPAVRWGGIVFESA 273
H+AA +R LRY+ GTR GI + GA A P+L GYSD+++AG+ D +ST+G + G + ++S+
Sbjct: 713 HLAAVRRILRYVAGTRCWGIRFGPGARCALPMLVGYSDSDLAGDPDERKSTSGQIFF--INGGPVTWQSS 780
BLAST of mRNA_P-wetherbeei_contig6837.1.1 vs. uniprot
Match: Q2R2J6_ORYSJ (Retrotransposon protein, putative, Ty1-copia subclass n=1 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=Q2R2J6_ORYSJ) HSP 1 Score: 57.8 bits (138), Expect = 2.120e-6 Identity = 29/70 (41.43%), Postives = 45/70 (64.29%), Query Frame = -1
Query: 64 HMAAAKRCLRYIVGTRSLGIVYCRGAAGARPVLTGYSDANMAGNFDNGRSTTGDCHLPAVRWGGIVFESA 273
H+AA +R LRY+ GTR GI + GA A P+L GYSD+++AG+ D +ST+G + G + ++S+
Sbjct: 1139 HLAAVRRILRYVAGTRCWGIRFGPGARCALPMLVGYSDSDLAGDPDERKSTSGQIFF--INGGPVTWQSS 1206
BLAST of mRNA_P-wetherbeei_contig6837.1.1 vs. uniprot
Match: Q7XPB1_ORYSJ (OSJNBb0026E15.10 protein n=2 Tax=Oryza sativa TaxID=4530 RepID=Q7XPB1_ORYSJ) HSP 1 Score: 57.8 bits (138), Expect = 2.120e-6 Identity = 29/70 (41.43%), Postives = 45/70 (64.29%), Query Frame = -1
Query: 64 HMAAAKRCLRYIVGTRSLGIVYCRGAAGARPVLTGYSDANMAGNFDNGRSTTGDCHLPAVRWGGIVFESA 273
H+AA +R LRY+ GTR GI + GA A P+L GYSD+++AG+ D +ST+G + G + ++S+
Sbjct: 1257 HLAAVRRILRYVAGTRCWGIRFGPGARCALPMLVGYSDSDLAGDPDERKSTSGQIFF--INGGPVTWQSS 1324
BLAST of mRNA_P-wetherbeei_contig6837.1.1 vs. uniprot
Match: A0A392P5W1_9FABA (Uncharacterized protein n=1 Tax=Trifolium medium TaxID=97028 RepID=A0A392P5W1_9FABA) HSP 1 Score: 53.5 bits (127), Expect = 2.620e-6 Identity = 34/85 (40.00%), Postives = 48/85 (56.47%), Query Frame = -1
Query: 31 VHMAAAKRCLRYIVGTRSLGIVYCRGAAGARPVLTGYSDANMAGNFDNGRSTTG---DCHLPAVRWGGIVFESAPAFGGAFNDGG 276
+H+AAAKR LRYI GT S GI+Y +G L G++D++ AG+ D+ +ST G L A+ W F+ P GG + G
Sbjct: 7 IHLAAAKRILRYIKGTISFGILYEKGELNQE--LKGWTDSDYAGDMDDRKSTLGYVFKLGLGAISWS---FKKQPIGGGMGSSTG 86
BLAST of mRNA_P-wetherbeei_contig6837.1.1 vs. uniprot
Match: A0A5N5FPD5_9ROSA (Uncharacterized protein n=1 Tax=Pyrus ussuriensis x Pyrus communis TaxID=2448454 RepID=A0A5N5FPD5_9ROSA) HSP 1 Score: 53.9 bits (128), Expect = 3.840e-6 Identity = 28/54 (51.85%), Postives = 39/54 (72.22%), Query Frame = -1
Query: 115 VHMAAAKRCLRYIVGTRSLGIVYCRGAAGARPVLTGYSDANMAGNFDNGRSTTG 276
+H+AAAKR LRY+ GT SLGI+Y +G L GYSD++ AG+ D+ +ST+G
Sbjct: 17 MHLAAAKRVLRYLKGTISLGILYRKGG---HVELRGYSDSDYAGDLDDRKSTSG 67
BLAST of mRNA_P-wetherbeei_contig6837.1.1 vs. uniprot
Match: A0A2I0JKP1_PUNGR (Uncharacterized protein n=1 Tax=Punica granatum TaxID=22663 RepID=A0A2I0JKP1_PUNGR) HSP 1 Score: 53.5 bits (127), Expect = 9.650e-6 Identity = 27/59 (45.76%), Postives = 41/59 (69.49%), Query Frame = -1
Query: 109 AAAVHMAAAKRCLRYIVGTRSLGIVYCRGAAGARPVLTGYSDANMAGNFDNGRSTTGDC 285
A+ +HM AAKR +RY+ GT+SLG+ +C + L GYSD++ AG+ D+ +ST+G C
Sbjct: 52 ASEIHMVAAKRVVRYLKGTQSLGVKFCESD---QFNLHGYSDSDWAGSMDDMKSTSGYC 107
BLAST of mRNA_P-wetherbeei_contig6837.1.1 vs. uniprot
Match: A0A8J5Y0J0_9ROSI (Integrase catalytic domain-containing protein n=1 Tax=Gossypium anomalum TaxID=47600 RepID=A0A8J5Y0J0_9ROSI) HSP 1 Score: 55.5 bits (132), Expect = 1.320e-5 Identity = 29/56 (51.79%), Postives = 37/56 (66.07%), Query Frame = -1
Query: 109 VHMAAAKRCLRYIVGTRSLGIVYCRGAAGARPVLTGYSDANMAGNFDNGRSTTGDC 276
VH+ A KR LRY+ GT S G+++CR R L GY+DAN +FD+ RSTTG C
Sbjct: 1293 VHVVALKRILRYLRGTLSHGLMFCRSD---RLSLVGYADANWGHDFDDRRSTTGYC 1345 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6837.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 18
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig6837.1.1 >prot_P-wetherbeei_contig6837.1.1 ID=prot_P-wetherbeei_contig6837.1.1|Name=mRNA_P-wetherbeei_contig6837.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=190bp PPQANSAIYSASIVERATERWSRLENDAAPPDSWKMTVTCGRTPVVEVAGback to top mRNA from alignment at P-wetherbeei_contig6837:988..1637- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig6837.1.1 ID=mRNA_P-wetherbeei_contig6837.1.1|Name=mRNA_P-wetherbeei_contig6837.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=650bp|location=Sequence derived from alignment at P-wetherbeei_contig6837:988..1637- (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig6837:988..1637- >mRNA_P-wetherbeei_contig6837.1.1 ID=mRNA_P-wetherbeei_contig6837.1.1|Name=mRNA_P-wetherbeei_contig6837.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=570bp|location=Sequence derived from alignment at P-wetherbeei_contig6837:988..1637- (Phaeothamnion wetherbeei SAG_119_79)back to top |