mRNA_P-wetherbeei_contig6819.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6819.1.1
Unique NamemRNA_P-wetherbeei_contig6819.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig6819.1.1 vs. uniprot
Match: A0A1X6NWJ4_PORUM (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NWJ4_PORUM)

HSP 1 Score: 62.4 bits (150), Expect = 1.910e-9
Identity = 32/75 (42.67%), Postives = 49/75 (65.33%), Query Frame = 1
Query:   37 KQFPELYIVVCTVLAAPASTGALERDFWIAGRLIQPDRTSLRPWHIEMSLFLKANVDAIP--ALDRIPALSAEAA 255
            +QFP L+ +  + + A AS+ + ER+FWIAGRL++P+R+SL    +EM   + AN D +P  A   IP+L+  AA
Sbjct:  423 QQFPALFPLAASAIGAAASSASCEREFWIAGRLVRPERSSLSVTSVEMHSLVAANADVLPTDAPQCIPSLTHAAA 497          
BLAST of mRNA_P-wetherbeei_contig6819.1.1 vs. uniprot
Match: A0A1X6P0L4_PORUM (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6P0L4_PORUM)

HSP 1 Score: 62.0 bits (149), Expect = 2.620e-9
Identity = 37/86 (43.02%), Postives = 52/86 (60.47%), Query Frame = 1
Query:    4 DALGKWNKHDVKQFPELYIVVCTVLAAPASTGALERDFWIAGRLIQPDRTSLRPWHIEMSLFLKANVDAIPA-LDRIPALS-AEAA 255
            DAL  W  H   QFP L++V  +V  A  S+ + ER+F+IAGRL+  DR+SL    +EM   + +N D +P     +P+LS AEAA
Sbjct:  278 DALEFWRTHRA-QFPALFVVAGSVFGAVGSSASCEREFYIAGRLVAGDRSSLSTGSVEMHSLVSSNADLLPFNTASVPSLSHAEAA 362          
BLAST of mRNA_P-wetherbeei_contig6819.1.1 vs. uniprot
Match: A0A1X6NWM3_PORUM (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NWM3_PORUM)

HSP 1 Score: 55.1 bits (131), Expect = 7.280e-7
Identity = 30/81 (37.04%), Postives = 48/81 (59.26%), Query Frame = 1
Query:    1 EDALGKWNKHDVKQFPELYIVVCTVLAAPASTGALERDFWIAGRLIQPDRTSLRPWHIEMSLFLKANVDAIPA-LDRIPAL 240
            + ALG W       +  L++V C++L AP S+ A ERDF +AG +++ DR++L   H+EM   ++ N   +P+ L  IP L
Sbjct:  493 DGALGFWAARR-DDYTLLHLVACSLLGAPGSSFASERDFSVAGLVLRKDRSTLLAEHVEMHCLVRFNAHLLPSDLSLIPRL 572          
BLAST of mRNA_P-wetherbeei_contig6819.1.1 vs. uniprot
Match: A0A0P1AKL2_PLAHL (Ribonuclease H-like domain n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AKL2_PLAHL)

HSP 1 Score: 49.3 bits (116), Expect = 2.790e-5
Identity = 31/83 (37.35%), Postives = 44/83 (53.01%), Query Frame = 1
Query:    1 EDALGKWNKHDVKQFPELYIVVCTVLAAPASTGALERDFWIAGRLIQPDRTSLRPWHIEMSLFLKANVDAIPALDRIPALSAE 249
            +D L  +      +FP L  V   +    AS   +ERDF IAG L+ P RT+L  + +EM LFL  N + IP  D IP + ++
Sbjct:    8 QDVLDGFCIKHQGRFPHLAAVARCIFGNSASAAGIERDFEIAGVLLNPRRTNLDTFVVEMILFLYINGEHIP-WDDIPLIDSK 89          
BLAST of mRNA_P-wetherbeei_contig6819.1.1 vs. uniprot
Match: UPI000E4143A9 (zinc finger BED domain-containing protein 1-like n=1 Tax=Astatotilapia calliptera TaxID=8154 RepID=UPI000E4143A9)

HSP 1 Score: 49.7 bits (117), Expect = 5.080e-5
Identity = 25/68 (36.76%), Postives = 36/68 (52.94%), Query Frame = 1
Query:    1 EDALGKWNKHDVKQFPELYIVVCTVLAAPASTGALERDFWIAGRLIQPDRTSLRPWHIEMSLFLKANV 204
            ED L  W  H +  FP+L  +    L  PAS+   ER F  +G ++   RT L+PW + M +FL  N+
Sbjct:  210 EDPLAWWKLHKMT-FPQLSKLARKYLCIPASSSPSERLFSTSGNIVTCQRTCLKPWRVNMLVFLNKNL 276          
BLAST of mRNA_P-wetherbeei_contig6819.1.1 vs. uniprot
Match: A0A0P1AQK6_PLAHL (Ribonuclease H-like domain n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AQK6_PLAHL)

HSP 1 Score: 49.7 bits (117), Expect = 5.570e-5
Identity = 33/84 (39.29%), Postives = 45/84 (53.57%), Query Frame = 1
Query:    1 EDAL-GKWNKHDVKQFPELYIVVCTVLAAPASTGALERDFWIAGRLIQPDRTSLRPWHIEMSLFLKANVDAIPALDRIPALSAE 249
            +D L G W KH  + FP L  V        A T  +ERDF IAG L+ P R +L  + +EM LFL  N +  P  D IP ++++
Sbjct:  231 QDVLDGFWIKHQGR-FPRLAAVARYTFGNSALTAGIERDFGIAGVLLNPRRNNLDTFVVEMILFLNINGEHTP-WDDIPLINSK 312          
BLAST of mRNA_P-wetherbeei_contig6819.1.1 vs. uniprot
Match: UPI000E40E102 (zinc finger BED domain-containing protein 1-like n=4 Tax=Pseudocrenilabrinae TaxID=318546 RepID=UPI000E40E102)

HSP 1 Score: 49.7 bits (117), Expect = 5.720e-5
Identity = 25/68 (36.76%), Postives = 36/68 (52.94%), Query Frame = 1
Query:    1 EDALGKWNKHDVKQFPELYIVVCTVLAAPASTGALERDFWIAGRLIQPDRTSLRPWHIEMSLFLKANV 204
            ED L  W  H +  FP+L  +    L  PAS+   ER F  +G ++   RT L+PW + M +FL  N+
Sbjct:  428 EDPLAWWKLHKMT-FPQLSKLARKYLCIPASSSPSERLFSTSGNIVTCQRTCLKPWRVNMLVFLNKNL 494          
BLAST of mRNA_P-wetherbeei_contig6819.1.1 vs. uniprot
Match: UPI000D315D64 (zinc finger BED domain-containing protein 1-like n=7 Tax=Haplochromini TaxID=319058 RepID=UPI000D315D64)

HSP 1 Score: 49.7 bits (117), Expect = 5.880e-5
Identity = 25/68 (36.76%), Postives = 36/68 (52.94%), Query Frame = 1
Query:    1 EDALGKWNKHDVKQFPELYIVVCTVLAAPASTGALERDFWIAGRLIQPDRTSLRPWHIEMSLFLKANV 204
            ED L  W  H +  FP+L  +    L  PAS+   ER F  +G ++   RT L+PW + M +FL  N+
Sbjct:  559 EDPLAWWKLHKMT-FPQLSKLARKYLCIPASSSPSERLFSTSGNIVTCQRTCLKPWRVNMLVFLNKNL 625          
BLAST of mRNA_P-wetherbeei_contig6819.1.1 vs. uniprot
Match: UPI000904D80F (zinc finger BED domain-containing protein 1-like n=4 Tax=Pseudocrenilabrinae TaxID=318546 RepID=UPI000904D80F)

HSP 1 Score: 49.3 bits (116), Expect = 7.320e-5
Identity = 25/68 (36.76%), Postives = 36/68 (52.94%), Query Frame = 1
Query:    1 EDALGKWNKHDVKQFPELYIVVCTVLAAPASTGALERDFWIAGRLIQPDRTSLRPWHIEMSLFLKANV 204
            ED L  W  H +  FP+L  +    L  PAS+   ER F  +G ++   RT L+PW + M +FL  N+
Sbjct:  240 EDPLAWWKLHKMT-FPQLSKLARKYLCIPASSSPSERLFSTSGNIVTCQRTCLKPWRVNMLVFLTKNL 306          
BLAST of mRNA_P-wetherbeei_contig6819.1.1 vs. uniprot
Match: H3ACA1_LATCH (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Latimeria chalumnae TaxID=7897 RepID=H3ACA1_LATCH)

HSP 1 Score: 49.3 bits (116), Expect = 7.630e-5
Identity = 23/64 (35.94%), Postives = 40/64 (62.50%), Query Frame = 1
Query:    1 EDALGKWNKHDVKQFPELYIVVCTVLAAPASTGALERDFWIAGRLIQPDRTSLRPWHIEMSLFL 192
            +D L  W +H +  +P+L ++  +VL  P S+ + ER+F +AGR+I   R+ L+P  ++  LFL
Sbjct:  315 QDLLNWWKEHSIV-YPKLSMLARSVLCIPTSSSSSERNFSVAGRMIDQRRSVLKPLTVDSILFL 377          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6819.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A1X6NWJ4_PORUM1.910e-942.67Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
A0A1X6P0L4_PORUM2.620e-943.02Dimer_Tnp_hAT domain-containing protein n=1 Tax=Po... [more]
A0A1X6NWM3_PORUM7.280e-737.04Dimer_Tnp_hAT domain-containing protein n=1 Tax=Po... [more]
A0A0P1AKL2_PLAHL2.790e-537.35Ribonuclease H-like domain n=1 Tax=Plasmopara hals... [more]
UPI000E4143A95.080e-536.76zinc finger BED domain-containing protein 1-like n... [more]
A0A0P1AQK6_PLAHL5.570e-539.29Ribonuclease H-like domain n=1 Tax=Plasmopara hals... [more]
UPI000E40E1025.720e-536.76zinc finger BED domain-containing protein 1-like n... [more]
UPI000D315D645.880e-536.76zinc finger BED domain-containing protein 1-like n... [more]
UPI000904D80F7.320e-536.76zinc finger BED domain-containing protein 1-like n... [more]
H3ACA1_LATCH7.630e-535.94Dimer_Tnp_hAT domain-containing protein n=1 Tax=La... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6819contigP-wetherbeei_contig6819:133..387 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog7897.ENSLACP00000007272
PFAMsDBD_Tnp_Hermes,Dimer_Tnp_hAT
Model size255
Max annot lvl33208|Metazoa
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.25e-05
EggNOG OGsKOG1121@1|root,KOG1121@2759|Eukaryota,3A4I2@33154|Opisthokonta,3BRWZ@33208|Metazoa,3D90A@33213|Bilateria,48GPE@7711|Chordata,49F4E@7742|Vertebrata
DescriptionHermes transposase DNA-binding domain
Cds size255
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186939.7600756-CDS-P-wetherbeei_contig6819:132..3871683186939.7600756-CDS-P-wetherbeei_contig6819:132..387Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6819 133..387 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6819.1.1prot_P-wetherbeei_contig6819.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6819 133..387 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6819.1.1

>prot_P-wetherbeei_contig6819.1.1 ID=prot_P-wetherbeei_contig6819.1.1|Name=mRNA_P-wetherbeei_contig6819.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=85bp
EDALGKWNKHDVKQFPELYIVVCTVLAAPASTGALERDFWIAGRLIQPDR
TSLRPWHIEMSLFLKANVDAIPALDRIPALSAEAA
back to top

mRNA from alignment at P-wetherbeei_contig6819:133..387-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6819.1.1 ID=mRNA_P-wetherbeei_contig6819.1.1|Name=mRNA_P-wetherbeei_contig6819.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=255bp|location=Sequence derived from alignment at P-wetherbeei_contig6819:133..387- (Phaeothamnion wetherbeei SAG_119_79)
GAGGATGCGCTGGGTAAGTGGAACAAGCATGACGTCAAGCAGTTCCCCGA GCTGTACATCGTAGTTTGCACCGTGCTGGCGGCACCGGCATCGACGGGTG CCCTGGAGCGCGATTTCTGGATAGCCGGACGCCTCATCCAGCCCGATCGC ACCAGCCTCAGACCGTGGCACATCGAGATGAGCCTCTTTCTGAAAGCCAA CGTAGACGCCATTCCGGCGCTGGACCGGATTCCGGCGCTTTCGGCGGAGG CTGCT
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig6819:133..387-

>mRNA_P-wetherbeei_contig6819.1.1 ID=mRNA_P-wetherbeei_contig6819.1.1|Name=mRNA_P-wetherbeei_contig6819.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=255bp|location=Sequence derived from alignment at P-wetherbeei_contig6819:133..387- (Phaeothamnion wetherbeei SAG_119_79)
GAGGATGCGCTGGGTAAGTGGAACAAGCATGACGTCAAGCAGTTCCCCGA
GCTGTACATCGTAGTTTGCACCGTGCTGGCGGCACCGGCATCGACGGGTG
CCCTGGAGCGCGATTTCTGGATAGCCGGACGCCTCATCCAGCCCGATCGC
ACCAGCCTCAGACCGTGGCACATCGAGATGAGCCTCTTTCTGAAAGCCAA
CGTAGACGCCATTCCGGCGCTGGACCGGATTCCGGCGCTTTCGGCGGAGG
CTGCT
back to top