mRNA_P-wetherbeei_contig6817.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6817.1.1
Unique NamemRNA_P-wetherbeei_contig6817.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6817.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6817contigP-wetherbeei_contig6817:1262..2910 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size784
Hectar predicted targeting categoryother localisation
Exons4
Cds size471
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186939.6852608-CDS-P-wetherbeei_contig6817:1261..14201683186939.6852608-CDS-P-wetherbeei_contig6817:1261..1420Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6817 1262..1420 -
1683186939.699502-CDS-P-wetherbeei_contig6817:1661..18581683186939.699502-CDS-P-wetherbeei_contig6817:1661..1858Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6817 1662..1858 -
1683186939.714146-CDS-P-wetherbeei_contig6817:2181..22961683186939.714146-CDS-P-wetherbeei_contig6817:2181..2296Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6817 2182..2296 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186939.7255552-UTR-P-wetherbeei_contig6817:2296..23231683186939.7255552-UTR-P-wetherbeei_contig6817:2296..2323Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6817 2297..2323 -
1683186939.7337418-UTR-P-wetherbeei_contig6817:2624..29101683186939.7337418-UTR-P-wetherbeei_contig6817:2624..2910Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6817 2625..2910 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6817.1.1prot_P-wetherbeei_contig6817.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6817 1262..2296 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6817.1.1

>prot_P-wetherbeei_contig6817.1.1 ID=prot_P-wetherbeei_contig6817.1.1|Name=mRNA_P-wetherbeei_contig6817.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=157bp
MPYKAPKWDCAGKKDPVKYPGACPDKSVCVNCMCTGKYAPPPVKPAPCPT
KKPTPMPVVPAPPTPKPTKKPSTPKPVAIATPKPTKKPVVPAVCGDGKIT
PPEKCECINKYAGMPYKAPKWDCAGKKDPVKYPGACPYKTSCANCQCTGK
YIPPVV*
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mRNA from alignment at P-wetherbeei_contig6817:1262..2910-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6817.1.1 ID=mRNA_P-wetherbeei_contig6817.1.1|Name=mRNA_P-wetherbeei_contig6817.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1649bp|location=Sequence derived from alignment at P-wetherbeei_contig6817:1262..2910- (Phaeothamnion wetherbeei SAG_119_79)
CGTCTGCTTCCTCAACTGTTGGTCTTGTGCTGCCTTCCTGCCGCCGGGGT
GACGTGAGCCGCATTTTTACATCACCCGGTCTGTCTGTGGCACGGCGCAA
TCTCGATCGGTCTGGCGTGGGGAAGGACAGGAATGTGAACCTTTTTCCTC
CTCCTCTAACCCGCTGTTGTCACTGCTGCTGTCGCCGCCACCGCCGCCGT
CGCAACCGCTGCATTGGTCGTGGTGTTTCTGTTGCCTTAGGTGCGGTGAC
GGCATCCTGACCCAGAACTGTAAGTACTACGAGCAGGCAAGTAAATTAGG
CGCTTCGTGACCAGAACCCCGGTCTTTTTCCGCAAGTCCTCAAGGCAGTA
TGCGTGCATGCTGGATGTCCGCACGACGAGAAGGGCATCAGGAGAGTGGC
AGTCTTACTCTTCCTCTCTCGCGTGCCTATTGCTGCCGCGTCCCATCGCC
TTCCGTGCAACGGTTGCGACGCCACCGCCCGACGCCGCCGCCGCCCTCCC
CTCTGCGCCGCGGCGCCTCCTGGCAACAACGACTACAATACGAACGCGAA
CGAACGAATGAACAAACGAACGAACGAATACAAACAGTGCGAGTGCATCA
ACAGGTACGCCGGCATGCCCTACAAGGCGCCCAAGTGGGACTGCGCGGGC
AAGAAGGACCCGGTTAAGTACCCCGGCGCCTGCCCCGACAAGAGCGTCTG
CGTCAACTGCATGTGCACCGGGAAGTACGGTGAGCAACGGAGGCGAAATG
CCCGCGCAGATCGGTCCTGGCTGACTCTGAACGAGGTTCCGCTCGGATGC
ACAGTTGTGCAAATGGGTGTTTGTCACCGTGGCTGGCCCTAACAACGGTC
AGAGACATTTGCCTGTTGGGATGCACGCTGAAACCACTTGGACGCTGCCG
GCGTGGCCGCGCCCCACTTCCGGCCCGTCAGTGCCTTGCCCTCGGAGTGA
CCGGATTGTGGAGTCAAAAGAGCATGCGTCTCAGGACAACATGTCGTGTC
ATCTCCCGTCGCAGCCCGCTCGCTGACCCCTTTTTTCCCTTCCTTCCCGC
AGCGCCGCCGCCGGTAAAGCCGGCGCCCTGCCCGACCAAGAAGCCGACGC
CGATGCCGGTGGTCCCGGCGCCGCCGACGCCGAAGCCGACCAAGAAGCCG
AGCACGCCCAAGCCCGTTGCCATCGCCACGCCCAAGCCGACAAAGAAGCC
GGTCGTCCCCGCCGTCTGCGGCGACGGCAAGATTACGCCGCCCGAGAAGG
TGTGTGGGGCAATGCGCTACGGTTCGGTTGCCGCCTTTTTCCTCACCCCT
CCTTCCGCCGGCCCGGCCCGGCCCGCGATGCCAGGTTCGGCTGGCTGCTT
CTTCCTCTTCTTCCCCTTTCGTTGCCGGAGATATCGCATCGCTCATTCTC
TCCGCCGCTTCGCCGCCGCCCGCCTACTCACACCCTTCCCCCCCCCGCCA
ACCAAAAACCGTAACGCCGCGAAAATGCGGAACAAAACAGTGCGAGTGCA
TCAACAAGTACGCCGGCATGCCCTACAAGGCGCCCAAGTGGGACTGCGCG
GGCAAGAAGGACCCGGTTAAGTACCCGGGCGCCTGCCCATACAAGACCTC
GTGCGCGAACTGCCAGTGCACCGGCAAGTACATCCCGCCCGTCGTCTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6817:1262..2910-

>mRNA_P-wetherbeei_contig6817.1.1 ID=mRNA_P-wetherbeei_contig6817.1.1|Name=mRNA_P-wetherbeei_contig6817.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=471bp|location=Sequence derived from alignment at P-wetherbeei_contig6817:1262..2910- (Phaeothamnion wetherbeei SAG_119_79)
ATGCCCTACAAGGCGCCCAAGTGGGACTGCGCGGGCAAGAAGGACCCGGT
TAAGTACCCCGGCGCCTGCCCCGACAAGAGCGTCTGCGTCAACTGCATGT
GCACCGGGAAGTACGCGCCGCCGCCGGTAAAGCCGGCGCCCTGCCCGACC
AAGAAGCCGACGCCGATGCCGGTGGTCCCGGCGCCGCCGACGCCGAAGCC
GACCAAGAAGCCGAGCACGCCCAAGCCCGTTGCCATCGCCACGCCCAAGC
CGACAAAGAAGCCGGTCGTCCCCGCCGTCTGCGGCGACGGCAAGATTACG
CCGCCCGAGAAGTGCGAGTGCATCAACAAGTACGCCGGCATGCCCTACAA
GGCGCCCAAGTGGGACTGCGCGGGCAAGAAGGACCCGGTTAAGTACCCGG
GCGCCTGCCCATACAAGACCTCGTGCGCGAACTGCCAGTGCACCGGCAAG
TACATCCCGCCCGTCGTCTGA
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