mRNA_P-wetherbeei_contig6816.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6816.2.1
Unique NamemRNA_P-wetherbeei_contig6816.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6816.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6816contigP-wetherbeei_contig6816:1664..3245 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1582
Hectar predicted targeting categorysignal peptide
Exons1
Cds size858
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186939.6266944-UTR-P-wetherbeei_contig6816:1663..18811683186939.6266944-UTR-P-wetherbeei_contig6816:1663..1881Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6816 1664..1881 -
1683186939.6538308-UTR-P-wetherbeei_contig6816:2739..32451683186939.6538308-UTR-P-wetherbeei_contig6816:2739..3245Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6816 2740..3245 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186939.6422744-CDS-P-wetherbeei_contig6816:1881..27391683186939.6422744-CDS-P-wetherbeei_contig6816:1881..2739Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6816 1882..2739 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6816.2.1prot_P-wetherbeei_contig6816.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6816 1882..2739 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6816.2.1

>prot_P-wetherbeei_contig6816.2.1 ID=prot_P-wetherbeei_contig6816.2.1|Name=mRNA_P-wetherbeei_contig6816.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=286bp
MRLCRLVLILSGGGRCRGHCRRRRRSSCRCCESILFPPPPLFPPPPLLPP
PWLLPPPLPPPLWLDSAAAVHRRRRHRCRYSLLSEFNDGDPAASKARPAS
CRQVPGTAELEYFMTTSYNGVLSNDTTPAVVGRIGWRKQEDPTPSWLIPR
SLQTALVVASQHGPTELLQDKRGQDRHRLSAARRRVQVCGRLQADPQRRR
AKLRRGRRHLLQAERDGHGSLRGRRCERSAQGRHPRAAGLRGGRQLELGL
GDLRPSLHSRSRFGVAKSGFRTTAAQSIHALRDHH*
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mRNA from alignment at P-wetherbeei_contig6816:1664..3245-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6816.2.1 ID=mRNA_P-wetherbeei_contig6816.2.1|Name=mRNA_P-wetherbeei_contig6816.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1582bp|location=Sequence derived from alignment at P-wetherbeei_contig6816:1664..3245- (Phaeothamnion wetherbeei SAG_119_79)
TCATTACCCCGTCCAAAACAGCACCAGCGTCCGTTTCATCACCGGCGACG
ACGTTACAAACACGCGGTTTTACATCGCAATTGTCGAGTACAACGGCCCG
ACCTTTGATTTTCAAGTCAAAGTGGTCCAGACTGCCCTCGCCTACAACTA
CGGCGGCGGTCCCCATGGACGGCTTTCCTTCGACCACCAGAACGGGAAGC
TCGATAACATGGCGAACCAGTCCCGTGCATAACGCGGGTTGCGCGCCCAA
ATACTACGCGGTCAACAACGTCGCGACGGTGGCGGCGCGGCCGGTGCAGG
TGAGAGCCGCGGCTGTCTACAACTTTGTCGCGTGGAAAAGGACGACGGCA
GCCGGCACGTCGCACGGTCATCTCGGGCAGCGCCTGCCTACGCAGAAGTT
CACAATCGCCAAGGACAAAAAGCTCGAGGCCACCTAGCTACGGGATGGGT
CACGCCGGCGGTGCTCGCGGAGGAGCCTCCGCCGATAGTTGCCATCAAAG
CCTTCTATGCGTCTCTGCAGGTTAGTTCTAATATTGTCTGGCGGTGGCCG
TTGTCGAGGCCACTGCCGCCGCCGCCGCCGCAGCAGCTGTCGCTGTTGTG
AGTCGATTCTGTTTCCGCCACCACCATTGTTTCCGCCACCACCATTGTTG
CCGCCGCCATGGCTGCTGCCGCCGCCTCTGCCGCCGCCGCTTTGGCTCGA
TTCAGCCGCCGCCGTACACCGCCGCCGCCGCCACCGCTGCCGTTACTCTC
TGCTTTCCGAGTTCAACGACGGCGACCCCGCGGCTTCCAAGGCACGGCCG
GCGTCCTGCAGGCAGGTCCCGGGAACCGCCGAACTTGAGTACTTTATGAC
GACCAGCTACAACGGGGTTCTTTCGAACGACACGACGCCGGCTGTCGTCG
GGCGCATCGGCTGGAGAAAGCAAGAGGACCCGACGCCCTCCTGGTTAATC
CCTCGGTCGCTGCAAACTGCGCTCGTCGTAGCTAGCCAACACGGCCCAAC
GGAGCTCCTACAAGACAAACGTGGCCAAGATCGGCACCGGCTTTCTGCGG
CTCGCCGGCGAGTGCAGGTTTGCGGGCGGCTGCAAGCTGATCCTCAGCGG
CGACGCGCCAAACTGCGACGCGGCCGCCGTCACCTTCTGCAGGCCGAACG
CGATGGCCATGGTAGCCTTCGCGGGCGACGATGCGAGCGCAGCGCTCAAG
GTCGGCATCCACGTGCTGCGGGTCTGCGTGGCGGCCGACAACTGGAACTT
GGACTCGGTGATCTTCGACCCAGTCTGCACAGCCGGTCACGGTTTGGAGT
CGCGAAAAGCGGTTTCAGAACTACAGCAGCGCAATCGATTCATGCACTTA
GGGATCATCATTGAAATACGAAGAACATACAAGGATTGCTGTGGCTGCCG
TCGCTGGAACGTATTGACCGGCGATAGGACGGAATCACGGGAGTGGCAGA
GGGCACGCCGCCATGGGTAAGTTCCAAAAATATTACAAAAGCTTTTATCG
AATAAGGTTTGACGGTCATCCCTATTCAGTGAGCCATCTCTCCACGAAGA
GGATTAAAAGTTAATTAAACTGTGTTGATGTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6816:1664..3245-

>mRNA_P-wetherbeei_contig6816.2.1 ID=mRNA_P-wetherbeei_contig6816.2.1|Name=mRNA_P-wetherbeei_contig6816.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=858bp|location=Sequence derived from alignment at P-wetherbeei_contig6816:1664..3245- (Phaeothamnion wetherbeei SAG_119_79)
ATGCGTCTCTGCAGGTTAGTTCTAATATTGTCTGGCGGTGGCCGTTGTCG
AGGCCACTGCCGCCGCCGCCGCCGCAGCAGCTGTCGCTGTTGTGAGTCGA
TTCTGTTTCCGCCACCACCATTGTTTCCGCCACCACCATTGTTGCCGCCG
CCATGGCTGCTGCCGCCGCCTCTGCCGCCGCCGCTTTGGCTCGATTCAGC
CGCCGCCGTACACCGCCGCCGCCGCCACCGCTGCCGTTACTCTCTGCTTT
CCGAGTTCAACGACGGCGACCCCGCGGCTTCCAAGGCACGGCCGGCGTCC
TGCAGGCAGGTCCCGGGAACCGCCGAACTTGAGTACTTTATGACGACCAG
CTACAACGGGGTTCTTTCGAACGACACGACGCCGGCTGTCGTCGGGCGCA
TCGGCTGGAGAAAGCAAGAGGACCCGACGCCCTCCTGGTTAATCCCTCGG
TCGCTGCAAACTGCGCTCGTCGTAGCTAGCCAACACGGCCCAACGGAGCT
CCTACAAGACAAACGTGGCCAAGATCGGCACCGGCTTTCTGCGGCTCGCC
GGCGAGTGCAGGTTTGCGGGCGGCTGCAAGCTGATCCTCAGCGGCGACGC
GCCAAACTGCGACGCGGCCGCCGTCACCTTCTGCAGGCCGAACGCGATGG
CCATGGTAGCCTTCGCGGGCGACGATGCGAGCGCAGCGCTCAAGGTCGGC
ATCCACGTGCTGCGGGTCTGCGTGGCGGCCGACAACTGGAACTTGGACTC
GGTGATCTTCGACCCAGTCTGCACAGCCGGTCACGGTTTGGAGTCGCGAA
AAGCGGTTTCAGAACTACAGCAGCGCAATCGATTCATGCACTTAGGGATC
ATCATTGA
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