mRNA_P-wetherbeei_contig6810.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6810.2.1
Unique NamemRNA_P-wetherbeei_contig6810.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig6810.2.1 vs. uniprot
Match: K8ECF3_9CHLO (Postreplication repair E3 ubiquitin-protein ligase rad18 n=1 Tax=Bathycoccus prasinos TaxID=41875 RepID=K8ECF3_9CHLO)

HSP 1 Score: 53.9 bits (128), Expect = 9.260e-6
Identity = 22/70 (31.43%), Postives = 39/70 (55.71%), Query Frame = 1 
Query:  292 LQLIRQHIVCCVCLSIFVSPVLLPCSHIVCEGCARREIESGNKRCPLCKSGIGLRNLRPDGWLARVVQAY 501
            L+ + + + CCVC+ +  SP    C+H  C+ C   +    N +CPLCKS +  R ++PD  +  +++ Y
Sbjct:   28 LRALGKSLECCVCIRLMESPSRTRCAHYFCKKCIL-DCAKANGKCPLCKSDVSRREVKPDAMMTEMIELY 96
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BLAST of mRNA_P-wetherbeei_contig6810.2.1 vs. uniprot
Match: A0A3P8XTH9_ESOLU (Uncharacterized protein n=1 Tax=Esox lucius TaxID=8010 RepID=A0A3P8XTH9_ESOLU)

HSP 1 Score: 55.1 bits (131), Expect = 1.020e-5
Identity = 20/53 (37.74%), Postives = 33/53 (62.26%), Query Frame = 1 
Query:  289 TLQLIRQHIVCCVCLSIFVSPVLLPCSHIVCEGCARREIESGNKRCPLCKSGI 447
            T  L+  H++C +C++IF+ PV L C H  C  C +  +++GN+ CP+C   I
Sbjct:   11 TDHLLSDHLLCSICVAIFIDPVSLKCQHTFCRQCLKDSLKAGNRHCPVCLDPI 63
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BLAST of mRNA_P-wetherbeei_contig6810.2.1 vs. uniprot
Match: UPI000661DB59 (E3 ubiquitin-protein ligase TRIM21-like isoform X1 n=2 Tax=Esox lucius TaxID=8010 RepID=UPI000661DB59)

HSP 1 Score: 55.1 bits (131), Expect = 2.570e-5
Identity = 20/53 (37.74%), Postives = 33/53 (62.26%), Query Frame = 1 
Query:  289 TLQLIRQHIVCCVCLSIFVSPVLLPCSHIVCEGCARREIESGNKRCPLCKSGI 447
            T  L+  H++C +C++IF+ PV L C H  C  C +  +++GN+ CP+C   I
Sbjct:    8 TDHLLSDHLLCSICVAIFIDPVSLKCQHTFCRQCLKDSLKAGNRHCPVCLDPI 60
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BLAST of mRNA_P-wetherbeei_contig6810.2.1 vs. uniprot
Match: F2TY73_SALR5 (RING-type domain-containing protein n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2TY73_SALR5)

HSP 1 Score: 53.9 bits (128), Expect = 7.050e-5
Identity = 21/46 (45.65%), Postives = 31/46 (67.39%), Query Frame = 1 
Query:  301 IRQHIVCCVCLSIFVSPVLLPCSHIVCEGCARREIESGNKRCPLCK 438
            +R+  VC +C+ + + PV+LPC+H VCE C RR  E  N  CP+C+
Sbjct:   47 VREEHVCFLCMGLLIPPVVLPCTHRVCEECFRRIEELSNMECPMCR 92
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BLAST of mRNA_P-wetherbeei_contig6810.2.1 vs. uniprot
Match: UPI0003C4C897 (tripartite motif-containing protein 5-like n=1 Tax=Myotis lucifugus TaxID=59463 RepID=UPI0003C4C897)

HSP 1 Score: 53.9 bits (128), Expect = 7.190e-5
Identity = 28/81 (34.57%), Postives = 43/81 (53.09%), Query Frame = 1 
Query:  301 IRQHIVCCVCLSIFVSPVLLPCSHIVCEGCAR---RE--IESGNKRCPLCKSGIGLRNLRPDGWLARVVQAYHACLREFDL 528
            +++ + C +CL +   P+ L C H  C+ C     RE  I  G   CP+C+S     NLRP+ ++A +V+A    LRE  L
Sbjct:    9 VKEEVTCPICLELHTEPMSLDCGHTFCQACITVNSRESMISQGESNCPVCRSTYQPENLRPNRYMANIVEA----LREVKL 85
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BLAST of mRNA_P-wetherbeei_contig6810.2.1 vs. uniprot
Match: UPI0007EE3A77 (tripartite motif-containing protein 5 isoform X3 n=2 Tax=Oryctolagus cuniculus TaxID=9986 RepID=UPI0007EE3A77)

HSP 1 Score: 53.1 bits (126), Expect = 9.910e-5
Identity = 23/70 (32.86%), Postives = 38/70 (54.29%), Query Frame = 1 
Query:  301 IRQHIVCCVCLSIFVSPVLLPCSHIVCEGCARREIESG-----NKRCPLCKSGIGLRNLRPDGWLARVVQ 495
            +++ + C +CL + V P+ + C H  C+ C     ES        RCP+C+ G  L NLRP+  +A +V+
Sbjct:    9 MKEEVTCPICLELLVEPLSIDCGHSFCQACITANYESMIAKEMESRCPVCRIGYQLENLRPNRHVANIVE 78
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6810.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
K8ECF3_9CHLO9.260e-631.43Postreplication repair E3 ubiquitin-protein ligase... [more]
A0A3P8XTH9_ESOLU1.020e-537.74Uncharacterized protein n=1 Tax=Esox lucius TaxID=... [more]
UPI000661DB592.570e-537.74E3 ubiquitin-protein ligase TRIM21-like isoform X1... [more]
F2TY73_SALR57.050e-545.65RING-type domain-containing protein n=1 Tax=Salpin... [more]
UPI0003C4C8977.190e-534.57tripartite motif-containing protein 5-like n=1 Tax... [more]
UPI0007EE3A779.910e-532.86tripartite motif-containing protein 5 isoform X3 n... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6810contigP-wetherbeei_contig6810:2611..3294 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog9785.ENSLAFP00000011838
Preferred nameTRIM21
PFAMsPRY,SPRY,zf-B_box,zf-C3HC4,zf-C3HC4_4,zf-RING_UBOX
Model size686
Max annot lvl33208|Metazoa
KEGG rclassRC02795
KEGG koko:K03006,ko:K04617,ko:K10651,ko:K12000,ko:K12009,ko:K12012,ko:K12015,ko:K12027,ko:K12033,ko:K12034,ko:K12037
KEGG ReactionR00435,R00441,R00442,R00443
KEGG Pathwayko00230,ko00240,ko01100,ko03020,ko04080,ko05016,ko05168,ko05169,ko05322,map00230,map00240,map01100,map03020,map04080,map05016,map05168,map05169,map05322
KEGG ModuleM00180
Hectar predicted targeting categoryother localisation
GOsGO:0000209,GO:0001817,GO:0002376,GO:0003674,GO:0003824,GO:0004842,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0006355,GO:0006464,GO:0006513,GO:0006807,GO:0006950,GO:0006952,GO:0006955,GO:0007154,GO:0007165,GO:0007166,GO:0008150,GO:0008152,GO:0009889,GO:0009892,GO:0009893,GO:0009894,GO:0009896,GO:0009987,GO:0010033,GO:0010468,GO:0010506,GO:0010508,GO:0010556,GO:0010605,GO:0016043,GO:0016567,GO:0016740,GO:0019219,GO:0019221,GO:0019222,GO:0019538,GO:0019787,GO:0022607,GO:0023052,GO:0030162,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031329,GO:0031331,GO:0031399,GO:0031400,GO:0031647,GO:0031648,GO:0031974,GO:0031981,GO:0032088,GO:0032268,GO:0032269,GO:0032446,GO:0032479,GO:0032897,GO:0032991,GO:0034097,GO:0034341,GO:0036211,GO:0040012,GO:0040013,GO:0042221,GO:0042802,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043433,GO:0043900,GO:0043901,GO:0043903,GO:0043933,GO:0044085,GO:0044092,GO:0044093,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045087,GO:0045787,GO:0045861,GO:0046782,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048525,GO:0050789,GO:0050792,GO:0050794,GO:0050896,GO:0051090,GO:0051091,GO:0051171,GO:0051172,GO:0051239,GO:0051246,GO:0051248,GO:0051252,GO:0051259,GO:0051716,GO:0051726,GO:0051865,GO:0060255,GO:0060333,GO:0065003,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070206,GO:0070647,GO:0070887,GO:0071310,GO:0071345,GO:0071346,GO:0071704,GO:0071840,GO:0080090,GO:0090085,GO:0090086,GO:0140096,GO:1901564,GO:1902186,GO:1902187,GO:1903320,GO:1903321,GO:1903506,GO:1903900,GO:1903901,GO:1990904,GO:2000112,GO:2001141
Exons1
Evalue2.41e-08
EggNOG OGsKOG2177@1|root,KOG2177@2759|Eukaryota,38C4M@33154|Opisthokonta,3BDNZ@33208|Metazoa,3CWUT@33213|Bilateria,480HC@7711|Chordata,49713@7742|Vertebrata,3JD3B@40674|Mammalia,3538X@311790|Afrotheria
Ec32 ortholog descriptionZinc finger, RING/FYVE/PHD-type
Ec32 orthologEc-06_004780.1
EC2.3.2.27,2.7.7.6
DescriptionE3 ubiquitin-protein ligase TRIM21-like
Cds size528
COG categoryO
BRITEbr01611,ko00000,ko00001,ko00002,ko01000,ko03019,ko03021,ko03400,ko04030,ko04121,ko04131
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186939.307782-UTR-P-wetherbeei_contig6810:2610..27661683186939.307782-UTR-P-wetherbeei_contig6810:2610..2766Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6810 2611..2766 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186939.320766-CDS-P-wetherbeei_contig6810:2766..32941683186939.320766-CDS-P-wetherbeei_contig6810:2766..3294Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6810 2767..3294 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6810.2.1prot_P-wetherbeei_contig6810.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6810 2767..3294 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6810.2.1

>prot_P-wetherbeei_contig6810.2.1 ID=prot_P-wetherbeei_contig6810.2.1|Name=mRNA_P-wetherbeei_contig6810.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=176bp
MESSPKEDNDVAAMSLMAADGGGVDDSEAAQEGGDAKNVDDMRSTLQLIR
QHIVCCVCLSIFVSPVLLPCSHIVCEGCARREIESGNKRCPLCKSGIGLR
NLRPDGWLARVVQAYHACLREFDLPFTQHTSPIRPPPRPAIHGAGRAHPH
SFAAAASAHVDWSEVVCCGQALAAPP
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mRNA from alignment at P-wetherbeei_contig6810:2611..3294+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6810.2.1 ID=mRNA_P-wetherbeei_contig6810.2.1|Name=mRNA_P-wetherbeei_contig6810.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=684bp|location=Sequence derived from alignment at P-wetherbeei_contig6810:2611..3294+ (Phaeothamnion wetherbeei SAG_119_79)
GGAAGGAAAATGATCAGTTGAGAAAGAGAACACCCGAAATGAGTCAACAA
ATGCAGTGCACTTGACTTGCCTTCGATGCGCCGTGGATTCTAATCCTGTG
CAGCTTAAACCAGCTATCGGACACACCTCGCGACTTTCACTGAGAAAAGC
TTCGCGATGGAAAGCTCTCCTAAGGAGGACAACGACGTGGCAGCCATGTC
GCTCATGGCTGCAGACGGCGGCGGTGTGGACGATTCTGAAGCGGCGCAGG
AAGGTGGCGATGCCAAGAACGTTGACGACATGAGGAGCACGCTCCAATTA
ATCAGGCAGCACATCGTGTGCTGCGTGTGCCTTAGCATCTTCGTCTCTCC
CGTGCTGCTGCCGTGCAGCCACATCGTCTGCGAAGGATGCGCCCGGAGGG
AGATTGAAAGCGGCAACAAGCGCTGTCCCCTCTGCAAATCGGGGATCGGC
CTGCGAAACCTCAGGCCCGACGGCTGGCTCGCGCGCGTCGTCCAGGCCTA
CCACGCCTGCTTGCGAGAGTTCGATTTGCCCTTCACGCAGCACACAAGCC
CCATCCGACCGCCACCTCGTCCGGCGATTCACGGCGCCGGAAGGGCCCAT
CCCCACAGCTTTGCGGCGGCGGCGAGCGCCCACGTCGACTGGAGCGAAGT
CGTGTGCTGCGGCCAGGCGCTTGCGGCGCCGCCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6810:2611..3294+

>mRNA_P-wetherbeei_contig6810.2.1 ID=mRNA_P-wetherbeei_contig6810.2.1|Name=mRNA_P-wetherbeei_contig6810.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=528bp|location=Sequence derived from alignment at P-wetherbeei_contig6810:2611..3294+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGAAAGCTCTCCTAAGGAGGACAACGACGTGGCAGCCATGTCGCTCAT
GGCTGCAGACGGCGGCGGTGTGGACGATTCTGAAGCGGCGCAGGAAGGTG
GCGATGCCAAGAACGTTGACGACATGAGGAGCACGCTCCAATTAATCAGG
CAGCACATCGTGTGCTGCGTGTGCCTTAGCATCTTCGTCTCTCCCGTGCT
GCTGCCGTGCAGCCACATCGTCTGCGAAGGATGCGCCCGGAGGGAGATTG
AAAGCGGCAACAAGCGCTGTCCCCTCTGCAAATCGGGGATCGGCCTGCGA
AACCTCAGGCCCGACGGCTGGCTCGCGCGCGTCGTCCAGGCCTACCACGC
CTGCTTGCGAGAGTTCGATTTGCCCTTCACGCAGCACACAAGCCCCATCC
GACCGCCACCTCGTCCGGCGATTCACGGCGCCGGAAGGGCCCATCCCCAC
AGCTTTGCGGCGGCGGCGAGCGCCCACGTCGACTGGAGCGAAGTCGTGTG
CTGCGGCCAGGCGCTTGCGGCGCCGCCG
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