mRNA_P-wetherbeei_contig6809.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6809.1.1
Unique NamemRNA_P-wetherbeei_contig6809.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig6809.1.1 vs. uniprot
Match: A0A836CCV0_9STRA (Vps16, N-terminal region-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCV0_9STRA)

HSP 1 Score: 117 bits (293), Expect = 9.900e-28
Identity = 66/142 (46.48%), Postives = 85/142 (59.86%), Query Frame = 1 
Query:   16 SMYAGDWVSLGEVQYRKFEVYK-LDWDGAREQSELDSHHVAAARFGGPIAMIRDETKLAIRLRATPYISQVAAGGAIGARLRIFSSAGRKLADVPWDDKAAGSSGRLVGIGWTDRELLVTVREQGTVAVFEVLGARVCELNL 438
            S    DW SLG VQY   E+Y  LDW G  E   LD H VAAA  GGPIAM+RDE  L ++L           G A+   LR+F++AGR LA+VPW+   AG  G LV +GWT+ ELLVTVRE G + + ++ G  + ++ L
Sbjct:    3 SEVGADWHSLGGVQYENLEIYPHLDWGGKSEDCRLDQHVVAAAPCGGPIAMVRDEAAL-VKL----------VGAALSPPLRLFTAAGRPLAEVPWEGPGAGG-GHLVAMGWTEEELLVTVREHGQLQLRDIRGTLLRDVQL 132
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BLAST of mRNA_P-wetherbeei_contig6809.1.1 vs. uniprot
Match: A9TG46_PHYPA (Protein VACUOLELESS1 n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A9TG46_PHYPA)

HSP 1 Score: 99.4 bits (246), Expect = 2.020e-21
Identity = 56/135 (41.48%), Postives = 80/135 (59.26%), Query Frame = 1 
Query:   25 AGDWVSLGEVQYRKFEVYKLDWDGAREQSELDSHHVAAARFGGPIAMIRDETKLAIRLRATPYISQVAAGGAIGARLRIFSSAGRKLADVPWDDKAAGSSGRLVGIGWTDRELLVTVREQGTVAVFEVLGARVCE 429
            A +W +L    YRK EVY + W+G     +L  H VA ARFGGPIAM+RDE+K+ ++LRA           +  A+L +FS++G+ L+ VPWD       GRL+ +GWTD E+L+ V   GTV  + + G  + E
Sbjct:    6 AAEWEALYNRYYRKLEVYTMCWNGI----DLSRHKVACARFGGPIAMVRDESKM-VQLRAE----------SARAKLLLFSASGKLLSSVPWDRPG----GRLITLGWTDEEILLAVVHDGTVFQYNIHGELIPE 121
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BLAST of mRNA_P-wetherbeei_contig6809.1.1 vs. uniprot
Match: A0A6V1U1E5_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1U1E5_HETAK)

HSP 1 Score: 93.2 bits (230), Expect = 3.970e-21
Identity = 55/137 (40.15%), Postives = 78/137 (56.93%), Query Frame = 1 
Query:   31 DWVSLGEVQYRKFEVY-KLDWDGAREQSELDSHHVAAARFGGPIAMIRDETKLAIRLRATPYISQVAAGGAIGARLRIFSSAGRKLADVPWDDKAAGSSGRLVGIGWTDRELLVTVREQGTVAVFEVLGARVCELNL 438
            DW SLG+VQYRK+ VY +++W       +LDS  +  A +GGP+A++RDE KL            V A   +   LRIFSS+GR LA++PW+ K       LVG+GW+D+E L+ V   G   V ++ G  +   NL
Sbjct:    5 DWQSLGDVQYRKWVVYDEMEWG----DFDLDSCIICGAPYGGPLAVVRDEKKL------------VEAEKDLTPTLRIFSSSGRLLAEIPWEHKG------LVGLGWSDQEALIAVFSDGGALVHDLHGRLLSSFNL 119
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BLAST of mRNA_P-wetherbeei_contig6809.1.1 vs. uniprot
Match: D7FS69_ECTSI (Vps16_N domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS69_ECTSI)

HSP 1 Score: 92.4 bits (228), Expect = 3.560e-20
Identity = 55/137 (40.15%), Postives = 78/137 (56.93%), Query Frame = 1 
Query:   19 MYAGDWVSLGEVQYRKFEVYKLDWDGAREQSELDSHHVAAARFGGPIAMIRDETKLAIRLRATPYISQVAAGGAIGARLRIFSSAGRKLADVPWDDKA-----AGSSGRLVGIGWTDRELLVTVREQGTVAVFEVLG 414
            M A DW +L +VQYRK  +Y LDW    E   LD   VA A++GG +AM+RDETKL           +++A  +I   LR+ + AG  +++   D        A   GRL+ +GWTD E+LV VRE+G V V +++G
Sbjct:    1 MLADDWTTLRDVQYRKIHLYDLDW-AEDEDRHLDRCLVAVAKYGGAVAMVRDETKLL----------KMSAKDSIVPTLRVCNCAGGTISETILDKAVQAPGTASERGRLLTMGWTDGEMLVMVRERGGVEVRDIMG 126
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BLAST of mRNA_P-wetherbeei_contig6809.1.1 vs. uniprot
Match: UPI00145582C0 (vacuolar protein sorting-associated protein 16 homolog n=1 Tax=Asterias rubens TaxID=7604 RepID=UPI00145582C0)

HSP 1 Score: 92.0 bits (227), Expect = 7.250e-19
Identity = 50/131 (38.17%), Postives = 78/131 (59.54%), Query Frame = 1 
Query:   28 GDWVSLGEVQYRKFEVYKLD--WDGAREQSELDSHHVAAARFGGPIAMIRDETKLAIRLRATPYISQVAAGGAIGARLRIFSSAGRKLADVPWDDKAAGSSGRLVGIGWTDRELLVTVREQGTVAVFEVLG 414
            GDW  LGEV YRK E+Y +D  W   +E ++L    VAAA +GGPIA++RD++K  +R    P +              I++S+GR+++   WD      SG+L+ +GW+ RE L+ V++ GTV V+++ G
Sbjct:    6 GDWNPLGEVFYRKLELYSMDRSW---QEVADLKKFKVAAAPYGGPIALVRDDSKTGVRGSTRPTVY-------------IYTSSGREISQFRWD------SGQLLQMGWSSREDLLCVQDDGTVLVYDIFG 114
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BLAST of mRNA_P-wetherbeei_contig6809.1.1 vs. uniprot
Match: A0A6P4XUS8_BRABE (Vacuolar protein sorting-associated protein 16 homolog n=1 Tax=Branchiostoma belcheri TaxID=7741 RepID=A0A6P4XUS8_BRABE)

HSP 1 Score: 90.5 bits (223), Expect = 2.440e-18
Identity = 50/129 (38.76%), Postives = 79/129 (61.24%), Query Frame = 1 
Query:   28 GDWVSLGEVQYRKFEVYKLDWDGAREQSELDSHHVAAARFGGPIAMIRDETKLAIRLRATPYISQVAAGGAIGARLRIFSSAGRKLADVPWDDKAAGSSGRLVGIGWTDRELLVTVREQGTVAVFEVLG 414
            GDW  LG+V YRK E+Y L W       +LD   VAAA +GGP+A+IRDETKL +R++           G+I   + I++S+GR+++ + W+      SG ++ +GW+  E L+ V+E G+V V+++ G
Sbjct:    6 GDWNPLGQVFYRKQEIYTLGW----RDIDLDKFVVAAAPYGGPVALIRDETKL-VRVQ-----------GSIRPVIYIYTSSGREISSIRWN------SGHVIHLGWSCSEELLCVQEDGSVLVYDIFG 112
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BLAST of mRNA_P-wetherbeei_contig6809.1.1 vs. uniprot
Match: C3ZIW0_BRAFL (Vacuolar protein sorting-associated protein 16 homolog n=6 Tax=Branchiostoma TaxID=7737 RepID=C3ZIW0_BRAFL)

HSP 1 Score: 90.5 bits (223), Expect = 2.490e-18
Identity = 50/129 (38.76%), Postives = 79/129 (61.24%), Query Frame = 1 
Query:   28 GDWVSLGEVQYRKFEVYKLDWDGAREQSELDSHHVAAARFGGPIAMIRDETKLAIRLRATPYISQVAAGGAIGARLRIFSSAGRKLADVPWDDKAAGSSGRLVGIGWTDRELLVTVREQGTVAVFEVLG 414
            GDW  LG+V YRK E+Y + W       +LD   VAAA +GGPIA+IRDETKL +R++           G+I   + I++S+GR+++ + W+      SG ++ +GW+  E L+ V+E G+V V+++ G
Sbjct:    6 GDWNPLGQVFYRKQEIYSMGW----RDIDLDKFVVAAAPYGGPIALIRDETKL-VRVQ-----------GSIRPVIYIYTSSGREISSIRWN------SGHVIHLGWSCSEELLCVQEDGSVLVYDIFG 112
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BLAST of mRNA_P-wetherbeei_contig6809.1.1 vs. uniprot
Match: A0A8J9Z1U9_BRALA (VPS16 protein n=1 Tax=Branchiostoma lanceolatum TaxID=7740 RepID=A0A8J9Z1U9_BRALA)

HSP 1 Score: 90.5 bits (223), Expect = 2.670e-18
Identity = 50/129 (38.76%), Postives = 79/129 (61.24%), Query Frame = 1 
Query:   28 GDWVSLGEVQYRKFEVYKLDWDGAREQSELDSHHVAAARFGGPIAMIRDETKLAIRLRATPYISQVAAGGAIGARLRIFSSAGRKLADVPWDDKAAGSSGRLVGIGWTDRELLVTVREQGTVAVFEVLG 414
            GDW  LG+V YRK E+Y + W       +LD   VAAA +GGPIA+IRDETKL +R++           G+I   + I++S+GR+++ + W+      SG ++ +GW+  E L+ V+E G+V V+++ G
Sbjct:    6 GDWNPLGQVFYRKQEIYSMGW----RDIDLDKFVVAAAPYGGPIALIRDETKL-VRVQ-----------GSIRPVIYIYTSSGREISSIRWN------SGHVIHLGWSCSEELLCVQEDGSVLVYDIFG 112
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BLAST of mRNA_P-wetherbeei_contig6809.1.1 vs. uniprot
Match: A0A8B7Z4H0_ACAPL (Vacuolar protein sorting-associated protein 16 homolog n=2 Tax=Valvatida TaxID=41166 RepID=A0A8B7Z4H0_ACAPL)

HSP 1 Score: 89.0 bits (219), Expect = 8.630e-18
Identity = 52/134 (38.81%), Postives = 79/134 (58.96%), Query Frame = 1 
Query:   25 AGDWVSLGEVQYRKFEVYKLD--WDGAREQSELDSHHVAAARFGGPIAMIRDETKLA-IRLRATPYISQVAAGGAIGARLRIFSSAGRKLADVPWDDKAAGSSGRLVGIGWTDRELLVTVREQGTVAVFEVLGA 417
            +GDW  LGEV YRK E+Y +D  W   +E +EL    VAAA +GGPIA++RDE+K+  +R    P I              I++S+GR+++   WD      SG+L+ +GW+  E L+ V+E GT  V+++ G+
Sbjct:    5 SGDWNPLGEVFYRKLELYSMDRSW---QEIAELKKFKVAAAPYGGPIALVRDESKMTHVRGGTRPTIY-------------IYTSSGREISQFRWD------SGKLLHMGWSSSEDLLCVQEDGTALVYDIFGS 116
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BLAST of mRNA_P-wetherbeei_contig6809.1.1 vs. uniprot
Match: A0A1S3I6Q2_LINUN (vacuolar protein sorting-associated protein 16 homolog n=1 Tax=Lingula unguis TaxID=7574 RepID=A0A1S3I6Q2_LINUN)

HSP 1 Score: 87.4 bits (215), Expect = 1.040e-17
Identity = 46/133 (34.59%), Postives = 80/133 (60.15%), Query Frame = 1 
Query:   16 SMYAGDWVSLGEVQYRKFEVYKLDWDGAREQSELDSHHVAAARFGGPIAMIRDETKLAIRLRATPYISQVAAGGAIGARLRIFSSAGRKLADVPWDDKAAGSSGRLVGIGWTDRELLVTVREQGTVAVFEVLG 414
            ++   DW  LGEV YRK E+Y+++W       +L  ++VA A +GGPIA+I+DE+KL  +++           G I   + I+S+AGR++    W+      SGR++ +GW++ E L+ V++ G+V V+++ G
Sbjct:    2 ALATADWNPLGEVFYRKTELYQMEW-----MQDLYKYNVATAPYGGPIALIQDESKLVAKVQ-----------GNIKPTVYIYSAAGREITRFTWN------SGRVIQLGWSNTEDLLCVQDDGSVLVYDIFG 112
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6809.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CCV0_9STRA9.900e-2846.48Vps16, N-terminal region-domain-containing protein... [more]
A9TG46_PHYPA2.020e-2141.48Protein VACUOLELESS1 n=1 Tax=Physcomitrium patens ... [more]
A0A6V1U1E5_HETAK3.970e-2140.15Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
D7FS69_ECTSI3.560e-2040.15Vps16_N domain-containing protein n=1 Tax=Ectocarp... [more]
UPI00145582C07.250e-1938.17vacuolar protein sorting-associated protein 16 hom... [more]
A0A6P4XUS8_BRABE2.440e-1838.76Vacuolar protein sorting-associated protein 16 hom... [more]
C3ZIW0_BRAFL2.490e-1838.76Vacuolar protein sorting-associated protein 16 hom... [more]
A0A8J9Z1U9_BRALA2.670e-1838.76VPS16 protein n=1 Tax=Branchiostoma lanceolatum Ta... [more]
A0A8B7Z4H0_ACAPL8.630e-1838.81Vacuolar protein sorting-associated protein 16 hom... [more]
A0A1S3I6Q2_LINUN1.040e-1734.59vacuolar protein sorting-associated protein 16 hom... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6809contigP-wetherbeei_contig6809:55..590 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog3218.PP1S223_98V6.1
PFAMsVps16_C,Vps16_N
Model size438
Max annot lvl35493|Streptophyta
KEGG koko:K20180
KEGG Pathwayko04138,map04138
Hectar predicted targeting categoryother localisation
GOsGO:0000323,GO:0000325,GO:0003674,GO:0003779,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005765,GO:0005768,GO:0005773,GO:0005774,GO:0005856,GO:0006810,GO:0006906,GO:0006996,GO:0007033,GO:0008092,GO:0008150,GO:0009705,GO:0009987,GO:0012505,GO:0015629,GO:0016020,GO:0016043,GO:0016050,GO:0016192,GO:0016197,GO:0030897,GO:0031090,GO:0031338,GO:0031410,GO:0031982,GO:0032879,GO:0032889,GO:0032991,GO:0033043,GO:0033263,GO:0035542,GO:0042144,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043254,GO:0044087,GO:0044088,GO:0044422,GO:0044424,GO:0044425,GO:0044433,GO:0044437,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0045992,GO:0045995,GO:0046907,GO:0048284,GO:0048519,GO:0050789,GO:0050793,GO:0050794,GO:0051049,GO:0051093,GO:0051128,GO:0051179,GO:0051234,GO:0051239,GO:0051241,GO:0051469,GO:0051641,GO:0051649,GO:0060627,GO:0061024,GO:0061025,GO:0065007,GO:0071840,GO:0090174,GO:0097576,GO:0097708,GO:0098588,GO:0098796,GO:0098805,GO:0098852,GO:0099023,GO:2000026
Exons2
Evalue1.44e-22
EggNOG OGsKOG2280@1|root,KOG2280@2759|Eukaryota,37KA0@33090|Viridiplantae,3GDI6@35493|Streptophyta
Ec32 ortholog descriptionVacuolar protein sorting-associated protein 16
Ec32 orthologEc-01_000770.1
DescriptionVacuolar protein sorting-associated protein
Cds size420
COG categoryU
BRITEko00000,ko00001,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186939.1858172-CDS-P-wetherbeei_contig6809:54..3061683186939.1858172-CDS-P-wetherbeei_contig6809:54..306Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6809 55..306 -
1683186939.2034388-CDS-P-wetherbeei_contig6809:404..5721683186939.2034388-CDS-P-wetherbeei_contig6809:404..572Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6809 405..572 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186939.2141252-UTR-P-wetherbeei_contig6809:572..5901683186939.2141252-UTR-P-wetherbeei_contig6809:572..590Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6809 573..590 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6809.1.1prot_P-wetherbeei_contig6809.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6809 55..572 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6809.1.1

>prot_P-wetherbeei_contig6809.1.1 ID=prot_P-wetherbeei_contig6809.1.1|Name=mRNA_P-wetherbeei_contig6809.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=140bp
MYAGDWVSLGEVQYRKFEVYKLDWDGAREQSELDSHHVAAARFGGPIAMI
RDETKLAIRLRATPYISQVAAGGAIGARLRIFSSAGRKLADVPWDDKAAG
SSGRLVGIGWTDRELLVTVREQGTVAVFEVLGARVCELNL
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mRNA from alignment at P-wetherbeei_contig6809:55..590-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6809.1.1 ID=mRNA_P-wetherbeei_contig6809.1.1|Name=mRNA_P-wetherbeei_contig6809.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=536bp|location=Sequence derived from alignment at P-wetherbeei_contig6809:55..590- (Phaeothamnion wetherbeei SAG_119_79)
TCTGTGGTACCCCAAAGTATGTACGCGGGCGACTGGGTCTCGCTTGGCGA
GGTGCAGTACCGCAAGTTCGAGGTATACAAGCTGGATTGGGACGGAGCCC
GCGAGCAAAGCGAGCTGGATTCCCATCATGTGGCGGCGGCGCGCTTCGGC
GGGCCCATCGCCATGATCCGCGACGAGACCAAGCTCGTCAAGGTGCTGTT
ACTTCGCTCGCTTTGCCTCTGGGTTTCTTTTTGCGAGAAAGAGACTCTAT
TTGGTTGCTTGTCGAAAAAGAAAGCAAAGTCAAGGCCATACGTTTGCGTG
CAACACCATACATTTCCCAGGTCGCGGCGGGCGGCGCCATCGGCGCGCGC
CTCCGCATCTTCAGCTCGGCGGGTCGCAAGCTCGCCGACGTCCCCTGGGA
CGACAAGGCCGCCGGCAGCAGCGGCCGCCTCGTCGGCATCGGCTGGACGG
ACCGCGAGCTGCTCGTGACGGTGCGCGAGCAGGGCACCGTTGCCGTCTTT
GAAGTACTCGGTGCTCGCGTCTGTGAGCTCAACCTT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6809:55..590-

>mRNA_P-wetherbeei_contig6809.1.1 ID=mRNA_P-wetherbeei_contig6809.1.1|Name=mRNA_P-wetherbeei_contig6809.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=420bp|location=Sequence derived from alignment at P-wetherbeei_contig6809:55..590- (Phaeothamnion wetherbeei SAG_119_79)
ATGTACGCGGGCGACTGGGTCTCGCTTGGCGAGGTGCAGTACCGCAAGTT
CGAGGTATACAAGCTGGATTGGGACGGAGCCCGCGAGCAAAGCGAGCTGG
ATTCCCATCATGTGGCGGCGGCGCGCTTCGGCGGGCCCATCGCCATGATC
CGCGACGAGACCAAGCTCGCCATACGTTTGCGTGCAACACCATACATTTC
CCAGGTCGCGGCGGGCGGCGCCATCGGCGCGCGCCTCCGCATCTTCAGCT
CGGCGGGTCGCAAGCTCGCCGACGTCCCCTGGGACGACAAGGCCGCCGGC
AGCAGCGGCCGCCTCGTCGGCATCGGCTGGACGGACCGCGAGCTGCTCGT
GACGGTGCGCGAGCAGGGCACCGTTGCCGTCTTTGAAGTACTCGGTGCTC
GCGTCTGTGAGCTCAACCTT
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