mRNA_P-wetherbeei_contig680.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig680.3.1
Unique NamemRNA_P-wetherbeei_contig680.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
[Close]
BLAST of mRNA_P-wetherbeei_contig680.3.1 vs. uniprot
Match: A0A836CGE0_9STRA (RING-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGE0_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 5.610e-18
Identity = 42/99 (42.42%), Postives = 66/99 (66.67%), Query Frame = 1 
Query:   19 QSVFDDTLFDHMCSLLYNYKALSLLRPEVGEHSVMPLLSQVMSACSKSSILWVLDLERNREIVALSPNVLPAFDFHPEKVPKVSLSDVPQMQGMFHRED 315
            ++ FD++LFD MCSL+YNYKALS++ P   E SV+PL+ QVMSACS+ + +W++DL ++  I A++  +  A +  PE +    L  +  +  MFH +D
Sbjct:  389 RNFFDESLFDQMCSLIYNYKALSVMNPSFMEDSVVPLVLQVMSACSEDTAMWLIDLGQDMTIRAVTDGIA-ALELRPEDLEGHKLRALRDVNAMFHPDD 486
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig680.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A836CGE0_9STRA5.610e-1842.42RING-type domain-containing protein n=1 Tax=Tribon... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig680contigP-wetherbeei_contig680:4757..5576 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size326
Hectar predicted targeting categoryother localisation
Exons3
Cds size324
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186938.648489-CDS-P-wetherbeei_contig680:4756..47861683186938.648489-CDS-P-wetherbeei_contig680:4756..4786Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig680 4757..4786 -
1683186938.6573393-CDS-P-wetherbeei_contig680:5042..51981683186938.6573393-CDS-P-wetherbeei_contig680:5042..5198Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig680 5043..5198 -
1683186938.6653934-CDS-P-wetherbeei_contig680:5438..55761683186938.6653934-CDS-P-wetherbeei_contig680:5438..5576Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig680 5439..5576 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig680.3.1prot_P-wetherbeei_contig680.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig680 4757..5576 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig680.3.1

>prot_P-wetherbeei_contig680.3.1 ID=prot_P-wetherbeei_contig680.3.1|Name=mRNA_P-wetherbeei_contig680.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=108bp
LNDWQTQSVFDDTLFDHMCSLLYNYKALSLLRPEVGEHSVMPLLSQVMSA
CSKSSILWVLDLERNREIVALSPNVLPAFDFHPEKVPKVSLSDVPQMQGM
FHREDINE
back to top

mRNA from alignment at P-wetherbeei_contig680:4757..5576-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig680.3.1 ID=mRNA_P-wetherbeei_contig680.3.1|Name=mRNA_P-wetherbeei_contig680.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=820bp|location=Sequence derived from alignment at P-wetherbeei_contig680:4757..5576- (Phaeothamnion wetherbeei SAG_119_79)
TTAAACGACTGGCAGACGCAGTCGGTGTTCGACGACACGCTCTTCGACCA
CATGTGCTCGCTCCTTTACAACTACAAGGCGCTGTCGCTGCTGCGCCCCG
AAGTGGGGGAGCATTCCGTGATGCCGCTGCTGAGCCAGGTGAGCTGGGAA
AGACATTTGCGTAGATGGAGACGGCGCAGATCTTTTTCGTAGCTGTATCT
GGTGTGTTGGGCATTCGCGCTGACAGGTCGCGGAAGACCCCTGCCACTAT
TCTCTCTCCTACACACCAAGATCTACCGTTGCAGCCGCCGCCGCCGTCCG
CTGCGCCCAATCCATCGCTCTGGTTCCGCCTACTTATTCCTGCCGGCCCG
CCCCCCTGTCCGCGGCGGCTCCGTGCAGGTCATGTCGGCGTGCAGCAAAA
GCTCCATCCTGTGGGTGCTAGACCTCGAACGGAACCGCGAGATCGTCGCG
CTGTCCCCCAACGTCCTGCCGGCGTTCGATTTCCATCCAGAGAAGGTCCC
GAAGGTGTCACTCAGCGATGTCCCCCAGATGCAGGCAAGAAAAAAGTCGG
AGCTCCTGTCCGCTCGGCGGCCGCTGCCATGTGAAGCAAGACCAGTGGCT
GTTGTGACCGATGGCAGTGACTTACGTCGTTTTGACCTCCACTTTTTGTA
AGGGGATACTTTTCCCGTTGCCTTCTTCCTTTGTCACTGTAGCGGTGCGC
CAGTGTTTTGCATCTTCACTGGCCGTTCGCTGTCATTCTTTTCTTGGCTT
TTCTTATCGACATCATGTGTTCTACTTGTTTGTTCCGCAGGGCATGTTCC
ATAGGGAGGACATAAACGAG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig680:4757..5576-

>mRNA_P-wetherbeei_contig680.3.1 ID=mRNA_P-wetherbeei_contig680.3.1|Name=mRNA_P-wetherbeei_contig680.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=324bp|location=Sequence derived from alignment at P-wetherbeei_contig680:4757..5576- (Phaeothamnion wetherbeei SAG_119_79)
TTAAACGACTGGCAGACGCAGTCGGTGTTCGACGACACGCTCTTCGACCA
CATGTGCTCGCTCCTTTACAACTACAAGGCGCTGTCGCTGCTGCGCCCCG
AAGTGGGGGAGCATTCCGTGATGCCGCTGCTGAGCCAGGTCATGTCGGCG
TGCAGCAAAAGCTCCATCCTGTGGGTGCTAGACCTCGAACGGAACCGCGA
GATCGTCGCGCTGTCCCCCAACGTCCTGCCGGCGTTCGATTTCCATCCAG
AGAAGGTCCCGAAGGTGTCACTCAGCGATGTCCCCCAGATGCAGGGCATG
TTCCATAGGGAGGACATAAACGAG
back to top