mRNA_P-wetherbeei_contig68.5.2 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig68.5.2
Unique NamemRNA_P-wetherbeei_contig68.5.2
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig68.5.2 vs. uniprot
Match: A0A8K1FGN5_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FGN5_PYTOL)

HSP 1 Score: 92.0 bits (227), Expect = 2.480e-17
Identity = 53/132 (40.15%), Postives = 77/132 (58.33%), Query Frame = 1 
Query:   43 SLRLSSARQNQKFVEQGINMSSEEPCAYAKLWGKRGED-EFAAYVTALPVQLGRTPGKDAAPSPHFIDLGDHKALSRHHATIDWNPTQKHYTITCKGKNGMVVGGKYRGKDGSEVLQSRTAIKLGVTHLYFL 435
            S ++++  + +K +E+   + +  P AYAKL G+  +D  F   +T LPV+LGR P     PS   I LG+HKA+SR H +I WN  +  + + C GKNGM   GK+  KD +  L S+  IK+G   LYFL
Sbjct:   11 SAQMATVEERKKALEKKF-VEARPPLAYAKLSGRVADDVPFEMLLTQLPVELGRGP-LSTTPSTR-ICLGEHKAISRKHVSIQWNQDKSCFELQCLGKNGMFAAGKFVPKDKTVDLASKMPIKIGPARLYFL 139
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BLAST of mRNA_P-wetherbeei_contig68.5.2 vs. uniprot
Match: A0A7S1G909_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1G909_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 2.730e-11
Identity = 47/114 (41.23%), Postives = 62/114 (54.39%), Query Frame = 1 
Query:  121 AYAKLWGKRGEDEFAAYVTALPVQLGRTPGKDAAPSPHFIDLGDHKALSRHHATIDWNPTQKHYTITCKGKNGMVVGGKYRGKDGSEV-LQSRTAIKLGVTHLYFLLPEESKPP 459
            AYAKL G      F AYVT LPV LGR  G     +   I L D K +SR HA + +NP + H+ +   GKNG+ V   +  K    V L +++A+K+G    YFL P+  KPP
Sbjct:   24 AYAKLEGPG----FVAYVTKLPVLLGRG-GDSQKGTAELIKLDDAK-VSRQHAKVSYNPRKNHFEMEVLGKNGVTVNTSFYKKGSVNVPLLNQSAVKVGAIKFYFLTPQFDKPP 131
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BLAST of mRNA_P-wetherbeei_contig68.5.2 vs. uniprot
Match: A0A1E4TW77_PACTA (Uncharacterized protein n=1 Tax=Pachysolen tannophilus NRRL Y-2460 TaxID=669874 RepID=A0A1E4TW77_PACTA)

HSP 1 Score: 70.5 bits (171), Expect = 3.230e-9
Identity = 42/114 (36.84%), Postives = 61/114 (53.51%), Query Frame = 1 
Query:  121 AYAKLWGKRGEDEFAAYVTALPVQLGRTPGKDAAPSPHFIDLGDHKALSRHHATIDWNPTQKHYTITCKGKNGMVVGG---KYRGKDGSEV-LQSRTAIKLGVTHLYFLLPEES 450
            AYAK+ GK    ++  YV AL V +GR    D       IDLG  K +SR HA I +N TQ+ + +   G+NG+ + G   +  G D   + LQS   + +G T + F+LP+ S
Sbjct:   53 AYAKIAGK----DWTYYVKALVVSIGRNTDSDRDDESVDIDLGPSKVVSRRHAVISYNLTQRKWELKVLGRNGLKIDGVRAQNPGADSEAISLQSGNIVDIGGTQMMFILPDSS 162
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig68.5.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A8K1FGN5_PYTOL2.480e-1740.15Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A7S1G909_9STRA2.730e-1141.23Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
A0A1E4TW77_PACTA3.230e-936.84Uncharacterized protein n=1 Tax=Pachysolen tannoph... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig68contigP-wetherbeei_contig68:11577..14898 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FHX7
Preferred nameFOXK1
PFAMsFHA,Forkhead
Model size1437
Max annot lvl2759|Eukaryota
KEGG koko:K09404
Hectar predicted targeting categoryother localisation
GOsGO:0000981,GO:0002252,GO:0002376,GO:0003674,GO:0003700,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006355,GO:0006357,GO:0006950,GO:0006952,GO:0007154,GO:0007267,GO:0007275,GO:0007494,GO:0007495,GO:0008150,GO:0009605,GO:0009607,GO:0009615,GO:0009653,GO:0009889,GO:0009893,GO:0009987,GO:0010468,GO:0010556,GO:0010604,GO:0010628,GO:0019219,GO:0019222,GO:0023052,GO:0030154,GO:0031323,GO:0031326,GO:0032501,GO:0032502,GO:0035295,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044464,GO:0048518,GO:0048565,GO:0048731,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051252,GO:0051607,GO:0051704,GO:0051707,GO:0055123,GO:0060255,GO:0065007,GO:0080090,GO:0098542,GO:0098586,GO:0140110,GO:1903506,GO:2000112,GO:2001141
Exons7
Evalue2.9e-36
EggNOG OGsCOG5025@1|root,KOG2294@2759|Eukaryota
Ec32 ortholog descriptionForkhead-associated (FHA) domain
Ec32 orthologEc-12_006270.1
Descriptionsequence-specific DNA binding
Cds size1002
COG categoryK
BRITEko00000,ko03000
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig68.5.2prot_P-wetherbeei_contig68.5.2Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig68 11676..14562 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186938.4689615-UTR-P-wetherbeei_contig68:11576..116751683186938.4689615-UTR-P-wetherbeei_contig68:11576..11675Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig68 11577..11675 +
1683186938.5510356-UTR-P-wetherbeei_contig68:14562..148981683186938.5510356-UTR-P-wetherbeei_contig68:14562..14898Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig68 14563..14898 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186938.4808238-CDS-P-wetherbeei_contig68:11675..118531683186938.4808238-CDS-P-wetherbeei_contig68:11675..11853Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig68 11676..11853 +
1683186938.4908926-CDS-P-wetherbeei_contig68:12147..122491683186938.4908926-CDS-P-wetherbeei_contig68:12147..12249Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig68 12148..12249 +
1683186938.5010567-CDS-P-wetherbeei_contig68:12561..126471683186938.5010567-CDS-P-wetherbeei_contig68:12561..12647Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig68 12562..12647 +
1683186938.5110996-CDS-P-wetherbeei_contig68:13025..132471683186938.5110996-CDS-P-wetherbeei_contig68:13025..13247Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig68 13026..13247 +
1683186938.5212758-CDS-P-wetherbeei_contig68:13559..136451683186938.5212758-CDS-P-wetherbeei_contig68:13559..13645Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig68 13560..13645 +
1683186938.5314372-CDS-P-wetherbeei_contig68:14034..141501683186938.5314372-CDS-P-wetherbeei_contig68:14034..14150Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig68 14035..14150 +
1683186938.5410807-CDS-P-wetherbeei_contig68:14350..145621683186938.5410807-CDS-P-wetherbeei_contig68:14350..14562Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig68 14351..14562 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig68.5.2

>prot_P-wetherbeei_contig68.5.2 ID=prot_P-wetherbeei_contig68.5.2|Name=mRNA_P-wetherbeei_contig68.5.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=334bp
MSSEEPCAYAKLWGKRGEDEFAAYVTALPVQLGRTPGKDAAPSPHFIDLG
DHKALSRHHATIDWNPTQKHYTITCKGKNGMVVGGKYRGKDGSEVLQSRT
AIKLGVTHLYFLLPEESKPPNHDPAAPEKPEAGGGGAAAEDTPTDDEVGE
DDTPVLGAGEPAATAAAALAEAAAAAPTAAAVPIYTKGALAAIVEQAFRD
AGLEARASEKGGLAVGDILGYVLRKEPSWWRKDEQAQLKKDVVSALESPL
FRRASGADAGAADARWLMQLAGDGAAAAPTASAAVPEAAAPVPMARSDKV
EEPQAKRAKVSATEEEKDAAAAESGERAGAGVG*
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mRNA from alignment at P-wetherbeei_contig68:11577..14898+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig68.5.2 ID=mRNA_P-wetherbeei_contig68.5.2|Name=mRNA_P-wetherbeei_contig68.5.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=3322bp|location=Sequence derived from alignment at P-wetherbeei_contig68:11577..14898+ (Phaeothamnion wetherbeei SAG_119_79)
CAGCTGGCGTGTGACGGATTTGGCGCTGCTGCCGGCGAGACGAGTCTCAG
GCTTTCGTCGGCTCGCCAAAACCAGAAATTTGTCGAGCAAGGAATTAACA
TGTCGTCCGAAGAGCCGTGCGCGTACGCCAAGCTCTGGGGGAAGCGGGGC
GAGGACGAGTTCGCCGCCTACGTGACGGCGCTCCCGGTCCAGCTCGGACG
CACGCCGGGGAAGGACGCCGCCCCGTCGCCGCACTTCATCGACCTCGGAG
ACCACAAGGCGCTGTCGCGGCATCACGGTGAGGCAGATGTGCGGGCGATT
TGTATTTCCCGTCGATCTCTTCTTTTGCCTCGTGTTTTGGTTTGTACGAG
TGGAGAATCGCCAAAAGCCTCCAATCTCTTCTCCTTTCGTTTTAAGTTTG
CATTTCGTAAGAGCAGGACGCCACCAGAGGGTCCCGCACGCCCTCATCCT
CTTGGTTCTATGCCCCCTTTTACCTTCCAGTAAGGGCCGCGCAGCGTCCC
GGTTCCTTAATTCCGTTCCCATTCCGATGCCCCCTCTTGTTGCTGTCGGT
CGGCGTCCATCCGTGGCACAGCGACAATCGACTGGAACCCCACCCAGAAG
CACTACACCATCACGTGCAAGGGCAAGAACGGGATGGTCGTTGGCGGAAA
GTACCGCGGCAAGGATGGCAGCGGTGAGAGCCAAGTGAACTGGCCCGGCT
GCCGCAGCGTCGCGCGCACTGCCGTTTCCTTCTCCCTACATTTCTTACGG
CCTCGTTTTCCAGTGCGTAACCGCTGAAGTGATCCTGGTCGATCATATTT
GTCCCTTCATGATTTGACTAGTTCCATTTCAAAAAAATATTGCGGGACGA
CGGCCTTTCTGAGAAGTTGTAGCGGTCGAAGCAGGGACACACTGATGAAC
TGCCAGCTGCGCAAGCGATTTGAATCCAATCTATTTTTCCCCGCTTCTCG
CTTCTCCGTTCCATGGAAAAACTCCGACGAAACAGAGGTGCTTCAGAGCC
GCACGGCCATCAAGCTGGGGGTGACGCACCTCTACTTCCTTTTGCCTGAG
GAAAGCAAACCTCCGAACCACGTGCGCCCGCTATTCCATCCATTCGCGCT
CCGTTCCGCTTCCGCTGTTGGTTGCTTCGTTGCCAGTTCAATCGCTGCCG
CCGTTCCGGTTCGCTTTCTAGCTCTGCCTTGCAGTTGCGCCGTTTGGGCA
GGCTGCTGGCGATGCGATCCCGTACCTTCACTGTTCTTGGGTGCGTGTTT
TGGTCTCATTGCAAGATTCCCCCCTTTTGCTGCCTTCTCATTGAGTCTCC
TCACTGGCCTGTTTCGTTACTTGACTGCTTTGGCTTTCTCCTGTCCCATG
GGTGACCTTCTTTAGCGCCTGTCCATCTGTCCCGGCGCCCGCCGTTCGTC
CGTCGTCTGTCCGTCCGTCCGTCCGTTTGTCGGCTCTGCTACTCTGCAGG
ACCCCGCGGCCCCGGAGAAACCGGAGGCGGGGGGAGGAGGTGCTGCGGCG
GAAGACACGCCGACCGACGACGAGGTGGGGGAGGACGACACGCCGGTGCT
GGGCGCAGGGGAACCCGCCGCCACCGCCGCCGCCGCGCTCGCTGAAGCTG
CTGCTGCCGCACCCACCGCCGCCGCTGTGCCCATTTACACCAAGGGGGCG
CTGGCCGCCATTGTGGAGCAGGTGGGTGGACGGTTATGGACTGGTAGTGC
GTCGCCTTTGCTATTGCCGCTGCTGCTGCTGCCGCTGCTACGGCTGCTCG
GCTGGCTTGATTTCTGGATTGGGCCGCGTAGGCGCATTTCTTGCTTTTGC
AATTATGCTTTCTTGGACGCCGGTTTGTTGTCTTGCGGTTTGCGGCGGCT
GGCTCGGAGCTGCCAGAGCGCCAATGGAGAAGATCGGAGTGCAGTGAAAA
AAGTTAACAATTCCCTGCCTTCACTTGCTCCCCATGACTGCTGCCGCCGC
TGTGTCCTGCCGCTGCCGCCGGAAACCTGACAGGCGTTTAGAGACGCCGG
CCTCGAGGCCCGCGCGTCAGAAAAGGGGGGCCTCGCCGTCGGAGACATCT
TGGGCTATGTTCTCAGGAAGTGAGCCAGCCCAGCTGAGGCCAGCATGTTC
CACTTCCTTGAATATGAAAGATGGCTTGGGATGGAAACTTTTGGGTGGTC
CGGCGGCGCGGCGGTTGATGCACGCTCGCGGATGTGATTATGCACTGCAG
GTCTTCGAACGGCAGCTGACTTGGAGGGCTGCCTGCAATTCCGAATCAGA
TCTACTGCCTGCACTCGCCGTTTTAAAATACGGAAACGCGCGGACCTGAT
AAGTTGGCCCTGCTTCCGCAATTGCTTTGCGGTTTTGGGAACCAGATAAG
AGTCGCCGTGCCGATTTCTGTGCGGGCGCGTGGATGTGAAAGGCCCCTGA
TTTTCAACCTGGTCGCTACCTTTAATTTGATCTCTCTGCGATTGGTTGAG
GCTGCCAGGGAGCCGAGCTGGTGGAGGAAGGACGAGCAGGCACAGCTGAA
GAAGGACGTGGTGTCGGCGCTGGAGTCACCATTGTTCCGGCGCGCTTCCG
GGGCCGATGCTGGCGCGGCGGACGGTGCGTTTTCATTTTTCATTCAGGGT
CCCCCAAAACGTTCTATATTCCCCGTACCCTACTGTTGTGGGGCAGCTTT
TTGTCTCTTTGAGCATAGCTCTCTTGGGGCTGAAGTCCGAGCTATCCCTT
TCCTTTTGCATAGCAGTCACTCATAGCCCCGGCTCGCCACCGCTTCCCCA
ACCCTGGTGATCCACACAATGCAGCACGCTGGCTGATGCAGCTTGCGGGA
GACGGAGCGGCCGCGGCACCGACGGCTTCAGCCGCAGTGCCGGAGGCCGC
CGCGCCGGTGCCCATGGCAAGAAGCGACAAGGTGGAGGAGCCGCAGGCTA
AGCGCGCCAAGGTTTCAGCCACGGAGGAGGAGAAGGACGCAGCGGCCGCC
GAAAGCGGGGAGCGAGCCGGAGCGGGAGTCGGATAGGCGGCGGCAGCGGC
CGCAGCCGCCGGGCGGGCGGAAGAGGCGCCGCTGCGGGTGAAGGTGGGGC
TGCGAACGGCACTGCTGCCAGCGGCACGGGCGAGTCGTGATTTGCCATTT
TAGCGTCGCCTGATCTCGTCGTGCGTGAATGGGTGGGGGTGTGAACAGAA
GGGCATTGCGGCGGTGGGCAGGACCACACGGTATTCCGGCTCTTGCAAGA
GAGGCGAAGTGGTTGGGCTGCAGTCGGAACTTTGTTCCCGTAGCTATTAA
GAAGCACATACGAACCACGAATAGTCGAAGAAAAGACAAGGTGTCTGCAG
CGGGCAGACCGTTGGAAATGAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig68:11577..14898+

>mRNA_P-wetherbeei_contig68.5.2 ID=mRNA_P-wetherbeei_contig68.5.2|Name=mRNA_P-wetherbeei_contig68.5.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1002bp|location=Sequence derived from alignment at P-wetherbeei_contig68:11577..14898+ (Phaeothamnion wetherbeei SAG_119_79)
ATGTCGTCCGAAGAGCCGTGCGCGTACGCCAAGCTCTGGGGGAAGCGGGG
CGAGGACGAGTTCGCCGCCTACGTGACGGCGCTCCCGGTCCAGCTCGGAC
GCACGCCGGGGAAGGACGCCGCCCCGTCGCCGCACTTCATCGACCTCGGA
GACCACAAGGCGCTGTCGCGGCATCACGCGACAATCGACTGGAACCCCAC
CCAGAAGCACTACACCATCACGTGCAAGGGCAAGAACGGGATGGTCGTTG
GCGGAAAGTACCGCGGCAAGGATGGCAGCGAGGTGCTTCAGAGCCGCACG
GCCATCAAGCTGGGGGTGACGCACCTCTACTTCCTTTTGCCTGAGGAAAG
CAAACCTCCGAACCACGACCCCGCGGCCCCGGAGAAACCGGAGGCGGGGG
GAGGAGGTGCTGCGGCGGAAGACACGCCGACCGACGACGAGGTGGGGGAG
GACGACACGCCGGTGCTGGGCGCAGGGGAACCCGCCGCCACCGCCGCCGC
CGCGCTCGCTGAAGCTGCTGCTGCCGCACCCACCGCCGCCGCTGTGCCCA
TTTACACCAAGGGGGCGCTGGCCGCCATTGTGGAGCAGGCGTTTAGAGAC
GCCGGCCTCGAGGCCCGCGCGTCAGAAAAGGGGGGCCTCGCCGTCGGAGA
CATCTTGGGCTATGTTCTCAGGAAGGAGCCGAGCTGGTGGAGGAAGGACG
AGCAGGCACAGCTGAAGAAGGACGTGGTGTCGGCGCTGGAGTCACCATTG
TTCCGGCGCGCTTCCGGGGCCGATGCTGGCGCGGCGGACGCACGCTGGCT
GATGCAGCTTGCGGGAGACGGAGCGGCCGCGGCACCGACGGCTTCAGCCG
CAGTGCCGGAGGCCGCCGCGCCGGTGCCCATGGCAAGAAGCGACAAGGTG
GAGGAGCCGCAGGCTAAGCGCGCCAAGGTTTCAGCCACGGAGGAGGAGAA
GGACGCAGCGGCCGCCGAAAGCGGGGAGCGAGCCGGAGCGGGAGTCGGAT
AG
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