mRNA_P-wetherbeei_contig678.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig678.3.1
Unique NamemRNA_P-wetherbeei_contig678.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig678.3.1 vs. uniprot
Match: D7G5A9_ECTSI (Vesicle docking protein P115 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G5A9_ECTSI)

HSP 1 Score: 464 bits (1193), Expect = 9.410e-134
Identity = 385/1009 (38.16%), Postives = 510/1009 (50.55%), Query Frame = 3
Query: 1671 MAPRDAAELLMERLTNAGDMGDRCEALEALLELSESHPAEVGQAGLSTFTDILQAGVADESMAQSIIEIMLNLVTSRDDIHRHAVAANIAGILTDVANVQNLLDLLESPDVLTALTAIRVLQQVQREAADSLEAAVLECPAGMQRLMDVLRDPREEVRNEVILLLGQLTRGRSLEVKKFVAFQEGFERLARIMADEGMAEGEGGVIVRDCLDVALNVLQGSPITQKLFCQSTALATFHELIDVRL------LAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDDWLTSGVQREIVSRAFDVLETLLAPTVDEAESNSGRSSTNGGGPXXXXXXXXXXXXXALAQRAERQTAVGRGGSGLLAELLVHDAVSRAEPYRRIPPELRARAMLLVASLIDGHPKNQRIVGKCFVQDTGDASLELPALLVEGALAETGPTFGRLY--HGLLEALFRGNEMGCTEVVTHVIAPXXXXXXXXNLDLETWVPPTPPGKILLNRXXXXXXXXXXXXXDSAGSSGDGIIADGVGTADGGGGRGLEA--AADALCGGCKVLAQLLRHGDLTTKEIALRIPMAGLLGERKA-LLPCLMVWLHAASQAASGADETTSAAASAAPW--------------AAGVCIALLQVLCRWIDGCRAAAHELLASPSNLFVVDLAGGKD---IAAATTGAKA----HVRGLSCLLLGLLLENVDGDGAGARSGAGARS---EWDAAVVMAMVENRVGIPAFMAAVEAVRRSMADEAAARQQLARAAARTAGGARAAT--AAPSVPSWVDPSFLPLLLKAAAQVRRRVIAVYT-GAASAGGGEAPGVTDGRGGVGSSSNCGGASAGGASC------------------------AEAASLLQAQEAEIADLRARLSEAESRIAIGPS---GATDLEDRLRARTAAAEAELAAALAEAATLTXXXXXXXXXXXXXXXXXXXAVAELEGLAVGANALERQLVERDELVSQLRGQL-ATNSQSQREVQL 4499
            + P+ AA +L+ERL NAGDMGDR  AL+ALL+LS+ HP +VG AG+  FTDILQAG+AD SM Q+I+ IMLNLV  +         AN++  L DV N                           + + +SLEA +LECPAG+Q L++VLRDPREEVRNEVILLLGQLT   +LEVKKFVAFQEGFERL  IM+ EGM EG G VIV+DCL V  N+L GS +T+ LFCQS  L  FH+LIDVR        A                                       SG+Q EI  +A DVL  LLA                         XXXXXXXX   +R ERQT V     G+L+E+L H A SRA+ +   P   R RAM +  +L+DGHP NQ  +G+  +QD G  S+ L  L++EGAL + G    R      +L  LF GNE+ CT+VV+H+IAP          D+E W+PPTPPGK+LL+              D+   +GDG             GR + A  AAD +  GC +++ L  HG    KE++LR+P+A   G     LL  L+ WL  A+     +  T   A S++                AA   I+L ++LC W+ GC AA  E+L +P+NLFVVD+A G+    +     GA A     ++GL+CL LGLLLE V+G GA  RSG        EW  ++VM M++NRVG+  FM+++EA +R+ A+   A+++  RAA    G   A    A  +    +DP F  LL +A+A+VR+RVI++ T G AS GGG A    +        +N                                   A  AS+++ QE EIA LR  LSEA SR+  G     G + LE  LR +    EA           L                      +EL+GLAV  ++LERQL++R+ +   LR QL A    S RE +L
Sbjct:   11 VTPQAAAGILVERLKNAGDMGDRRNALDALLKLSQDHPTDVGHAGMPIFTDILQAGIADRSMTQTIMGIMLNLVKEQ--------GANVSSFLKDVQNXXXXXXXXXXXXXXXXXXXXXXXXXXXKSSGESLEACILECPAGLQALVEVLRDPREEVRNEVILLLGQLTTS-NLEVKKFVAFQEGFERLFDIMSGEGMLEG-GSVIVKDCLHVCNNLLSGSSLTKALFCQSGCLKRFHQLIDVRTSDGEDPAAVAAQNGPGTEVVGAEKGEEGSGEEEKAPSHDGAPPMGAMSGMQNEIACKALDVLMLLLAXXXXXXXXXXXXXXXX---------XXXXXXXXXXGKRPERQTLVAEVSEGMLSEMLAHVAFSRADAFSHAPVACRERAMRVTGALVDGHPTNQYNMGELLIQDVGLDSVALATLVMEGALGKGGADRNRTEACQWVLGCLFHGNELVCTQVVSHIIAPPPPPLELE--DIEAWIPPTPPGKVLLDSLAAAAKTLFEGRGDNN-DNGDGE------------GRRVAATQAADVISRGCMIISMLFTHGGALAKELSLRVPLAAATGAHPTTLLHVLLHWLELATSHPPPSTATDRGAPSSSRSGDGPLGRPTVDGHAAADAGISLERLLCGWMYGCPAAVVEMLDNPANLFVVDVAAGRCSVLVEGGEGGATAVQCVALKGLACLALGLLLEYVEGTGA-PRSGXXXXXXXXEWTRSLVMKMIQNRVGMTPFMSSIEATKRAFAEAETAQRRRDRAARERKGSGEAGQEGAGNNGELRLDPGFSSLLARASAEVRQRVISILTHGDASDGGGVAADSLE--------TNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGLASMVELQEKEIAGLREELSEALSRVPRGGGEGGGVSALEGALRNQVEQLEAAAVEQSEGFKRLQTELSDALAQVEAEKESLQLLTSELQGLAVSTSSLERQLLDRESVCDGLRRQLDAGEDSSAREGEL 976          
BLAST of mRNA_P-wetherbeei_contig678.3.1 vs. uniprot
Match: A0A836C866_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C866_9STRA)

HSP 1 Score: 298 bits (764), Expect = 1.320e-78
Identity = 282/840 (33.57%), Postives = 380/840 (45.24%), Query Frame = 3
Query: 1671 MAPRDAAELLMERLTNAGDMGDRCEALEALLELSESHPAEVGQAGLSTFTDILQAGVADESMAQSIIEIMLNLVTSRDDIHRHAVAANIAGILTDVANVQNLLDLLESPDVLTALTAIRVLQQVQREAADSLEAAVLE-CPAGMQRLMDVLRDPREEVRNEVILLLGQLTRGRSLEVKKFVAFQEGFERLARIM---------------------------------------ADEGMAEGEGGVIVRDCLDVALNVLQGSPITQKLFCQSTALATFHELIDVRLLAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDDWLTSGVQREIVSRAFDVLETLLAPTVDEAESNSGRSSTNGGGPXXXXXXXXXXXXXALAQRAERQTAVGRGGSGLLAELLVHDAVSRAEPYRRIPPELRARAMLLVASLIDGHPKNQRIVGKCFVQDTGDASLELPALLVEGALAETGPTFG--RLYH-GLLEALFRGNEMGCTEVVTHVIAPXXXXXXXXNLDLETWVPPTPPGKILLNRXXXXXXXXXXXXXDSAGSSGDGIIADGVGTADGGGGRGLEAAADALCGGCKVLAQLLRHG-DLTTKEIALRIPMAGLLGER-KALLPCLMVWLHAASQA------------------------ASGADETTSAA-----------------------ASAAPWAAGVCI----ALLQVLCRWIDGCRAAAHELLASPSNLFVVDLAGGKDIAAATTGAKA--------------------------HVRGLSCLLLGLLLENVDGDGAGARSGAGARSEWDAAVVMAMVENRVGIPAFMAAVEAVR 3824
            M P   A +L+ERL  AGD  DR  ALE L++LS+S PAEVG+ G+  F+DILQ G+ D S+ Q I++IMLNLV++         AA +AG     A +Q+LLDLLES D +TA+ A R +  +   A  +LEA +LE  PAG+QR++D L D RE VR E +LLL  L  G   E+ + VAFQEG ERL  IM                                       A +GM  G    +V DCL+    VL  S + + LFCQS  +   H+L+D+R LA                                     L   VQ +I+ RA D+L  L A             ST     XXXXXXXXXXXX     RA+RQ A+G    GLLAELL H A+SRAEPY R PP +RA A+  +  ++ GH +NQR V +  VQD G  S  LP LLV+GA+   G      RL H    +A + GN + C ++ +HVIAP  XX    ++DLE WVPP  PG +LL                               TA           A+ L  G ++   LL HG D   +EIALR+ +     E  + L+ C+++WL  A+ A                            D+  SA                         S    + G  +     LLQ LC+W+ GC AA  ELL SP+N+ +VD+A  +  +                                   +RGL+CL+LG+ L   + D     +GA A  EW  A V+A++E RVG+  F + ++A R
Sbjct:    1 MDPSRQAFILVERLKAAGDPSDRRHALEQLVDLSKSSPAEVGKHGMLVFSDILQCGLVDVSLGQHIMDIMLNLVSAPGAASDANAAAVLAG---GGAMLQSLLDLLESEDAVTAVGAARAVAALHARAPAALEACLLEEIPAGVQRVVDTLLDRREAVRAEGVLLLRALAAGGHAELARVVAFQEGPERLFAIMGQVTEDMLLLLLLLPPLLLPLLLXXXXXXXXXSPLLLHGAQDGMIAGTQ--LVADCLEACAAVLGASHVARALFCQSRCIGVLHQLVDIRWLAHAARGAAAAGGQRGEGAGAEAPP--------------LVGPVQCDIMLRALDLLRLLAAA-----------DSTTXXXXXXXXXXXXXXXXDGAGDRAQRQLALGGAARGLLAELLAHVAISRAEPYCRAPPRVRAAALAALTEIVYGHAENQRRVLEMLVQDVGYDSALLPTLLVQGAMDWQGERAWEERLAHCKAFQACYTGNPLACAQLFSHVIAPPPXXLDL-DVDLEDWVPPVQPGSVLL-----------------------------AATAS----XXXXXXAEPLAEGLQLTVMLLLHGRDAAAQEIALRVALPPHPAEPPRPLMACVLLWLEDAAAAWXXXXXXXXXXXXXXXXXXXXXXXXXXXDDHGSAGYAVSNGXXXXXXXXXXXXXXXDDGSGPGGSVGGAVRQVEVLLQFLCQWLFGCPAAVAELLTSPANMVIVDMAAQRARSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTLPQQLRGLACLVLGVALVFAETD-----AGATAAPEWPRAAVLAVIERRVGLAQFTSCLDATR 771          
BLAST of mRNA_P-wetherbeei_contig678.3.1 vs. uniprot
Match: A0A5D6XZR0_9STRA (2OG-FeII_Oxy_2 domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XZR0_9STRA)

HSP 1 Score: 167 bits (422), Expect = 1.450e-41
Identity = 99/258 (38.37%), Postives = 132/258 (51.16%), Query Frame = 3
Query:  342 RVLGR*ASQSVDQTVVRITDDAGVFSLKGCDGFLFMPGALSQSEQLHLAKACLENYIEPPLAVTNLAAIAEKLNGDGKKGGGGSDSGASGVGDGGSSVRSGSRPVPRAPCNIWRSALAAGHHVPPKLGATPLGKLSFATLGYHYDWTARRYTPDRRGPVPVELADLGRRLAKRVGFDLEPEAVICNFYSASRRMGGHRDDLELALEAPVVVVSLGRPAVFLLGGLRREDPAAPCVVRSGDVLILGGASRLRFHGVPRV 1115
            RV+G  A+    +  +   D  GV      +GF  +P AL  + QL LA ACL  Y E P  VTN+    E++                                     +IWR+A A     P    A PL KL +A  GYHY+WTAR+Y  +R  PVP  L  L ++ A+  G  +  EAVI NFY  S  MGGH+DD+E  +  PV+ +SLG  +VFL GGL +++P    ++RSGDV +LGGASRL FHGV +V
Sbjct:   41 RVVGTWAAAGAAERPILSFDGCGVLH----EGFFVIPRALDAAAQLELAHACLTEYAEAP-HVTNMHLQHEQV------------------------------------ADIWRTARACRPDDPSS--APPLSKLHWAACGYHYEWTARKYFRERFSPVPAALEQLAQQCARVCGMSIAAEAVIVNFYKKSSTMGGHQDDVEYTMAHPVISLSLGSSSVFLKGGLTKDEPPLEVLLRSGDVAVLGGASRLSFHGVAKV 255          
BLAST of mRNA_P-wetherbeei_contig678.3.1 vs. uniprot
Match: A0A8K1C4B3_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C4B3_PYTOL)

HSP 1 Score: 163 bits (413), Expect = 2.780e-40
Identity = 93/240 (38.75%), Postives = 123/240 (51.25%), Query Frame = 3
Query:  432 DGFLFMPGALSQSEQLHLAKACLENYIEPPLAVTNLAAIAEKLNGDGKKGGGGSDSGASGVGDGGSSVRSGSRPVPRAPCNIWRSALAAGHHVPPKLGATPLGKLSFATLGYHYDWTARRYTPDRRGPVPVELADLGRRLAKRVGFDLEPEAVICNFYSASRRMGGHRDDLELALEAPVVVVSLGRPAVFLLGGLRREDPAAPCVVRSGDVLILGGASRLRFHGVPRVYGP------DDW 1133
            +GF  +P A+  + QL +A +CL  Y+E P  VTN+    E++                                      IW+ A A+    P K  A  LGKL +   GYHYDWTAR+Y PD   PVP  LA+LG   A+  G  L  EAVI NFY  +  MGGH+DD+E  ++ PVV +SLG   VFL GGL +++     ++RSGD+ ILGG SRL FHGV ++         DDW
Sbjct:   67 EGFYVIPDAVDPATQLDIAYSCLTEYVEAP-HVTNMHQQNEQV------------------------------------AQIWQKARASHPREPAKSPA--LGKLHWGASGYHYDWTARKYYPDNFSPVPQRLAELGASCAEACGMTLASEAVIVNFYKKNSTMGGHQDDVEYTMDHPVVSLSLGSQCVFLKGGLTKDEAPLEVLLRSGDIAILGGKSRLSFHGVAKILASPMEIDEDDW 267          
BLAST of mRNA_P-wetherbeei_contig678.3.1 vs. uniprot
Match: A0A484DZD0_BRELC (2OG-FeII_Oxy_2 domain-containing protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DZD0_BRELC)

HSP 1 Score: 158 bits (400), Expect = 7.810e-39
Identity = 89/252 (35.32%), Postives = 126/252 (50.00%), Query Frame = 3
Query:  363 SQSVDQTVVRITDDAGVFSLKGCDGFLFMPGALSQSEQLHLAKACLENYIEPPLAVTNLAAIAEKLNGDGKKGGGGSDSGASGVGDGGSSVRSGSRPVPRAPCNIWRSALAAGHHVPPKLGATPLGKLSFATLGYHYDWTARRYTPDRRGPVPVELADLGRRLAKRVGFDLEPEAVICNFYSASRRMGGHRDDLELALEAPVVVVSLGRPAVFLLGGLRREDPAAPCVVRSGDVLILGGASRLRFHGVPRVY 1118
            SQ++++  V   D  G    K   G   +P AL +  QLH A ACL  ++E P  +TNL     + +G                                    IW  A  +    P +     L KLS++ LGYHYDWTAR+Y  D+  PVP  L  LG++ A   G  L PEA+I NFY     MGGH DD E  ++ PV+ +SLG   +FL+GG  +++P    ++RSGD++++GG SR  +HGV RV+
Sbjct:   48 SQNLEERPVLGFDGFG----KSHHGLCVIPSALDEITQLHFAHACLTEFVELP-HLTNLHKQNHQFSG------------------------------------IWNQACESYPQNPSEFPL--LAKLSWSALGYHYDWTARKYHRDKHSPVPESLQQLGKKCAAACGMKLAPEAIIINFYKTKSAMGGHLDDAEFTMDHPVISLSLGSSCIFLIGGQSKDEPPLQILLRSGDIVVMGGVSRRCYHGVARVF 256          
BLAST of mRNA_P-wetherbeei_contig678.3.1 vs. uniprot
Match: A0A1V9YH16_9STRA (Alkylated DNA repair protein alkB-like protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YH16_9STRA)

HSP 1 Score: 150 bits (379), Expect = 5.400e-36
Identity = 81/227 (35.68%), Postives = 114/227 (50.22%), Query Frame = 3
Query:  435 GFLFMPGALSQSEQLHLAKACLENYIEPPLAVTNLAAIAEKLNGDGKKGGGGSDSGASGVGDGGSSVRSGSRPVPRAPCNIWRSALAAGHHVPPKLGATPLGKLSFATLGYHYDWTARRYTPDRRGPVPVELADLGRRLAKRVGFDLEPEAVICNFYSASRRMGGHRDDLELALEAPVVVVSLGRPAVFLLGGLRREDPAAPCVVRSGDVLILGGASRLRFHGVPRV 1115
            GF  +PGAL  S Q  LA+ CL  Y E P   TNL  + +++ G                                    IW  + A     P      P+ KL +A LGYHYDWT R Y  ++   +P  L  LG   A+ VG D+  EA + N+Y A   MGGH+D++E+  + PVV  S+G  A+FL GGL +++P    ++RSGD +++GGASRL FHG+ + 
Sbjct:   87 GFFILPGALDASTQRLLAEKCLNEYAEAP-HTTNLHPLGQQIEG------------------------------------IWAKSTACAAGQP-----DPMDKLHWAALGYHYDWTNRAYPREKGSHIPKLLQTLGVACAEAVGLDITSEAALVNYYKAGSTMGGHQDNVEVTFDHPVVSFSVGSSAIFLKGGLTKDEPPIEILLRSGDAIVMGGASRLCFHGIAKT 271          
BLAST of mRNA_P-wetherbeei_contig678.3.1 vs. uniprot
Match: A0A0P1AMQ7_PLAHL (Alkylated dna repair protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AMQ7_PLAHL)

HSP 1 Score: 149 bits (376), Expect = 7.370e-36
Identity = 87/227 (38.33%), Postives = 117/227 (51.54%), Query Frame = 3
Query:  435 GFLFMPGALSQSEQLHLAKACLENYIEPPLAVTNLAAIAEKLNGDGKKGGGGSDSGASGVGDGGSSVRSGSRPVPRAPCNIWRSALAAGHHVPPKLGATPLGKLSFATLGYHYDWTARRYTPDRRGPVPVELADLGRRLAKRVGFDLEPEAVICNFYSASRRMGGHRDDLELALEAPVVVVSLGRPAVFLLGGLRREDPAAPCVVRSGDVLILGGASRLRFHGVPRV 1115
            GF  +P AL +  QL  A ACL  + E P  +TN+    ++++                                    NIW+ A  +    P +  +  L KL +A LGYHYDWTAR+Y   R  PVP  L  LG R A   G  L  EA+I N+Y     MGGHRDD+E  ++ PVV +SLG P +FLLGG  +++     ++RSGDV+I+GGASR  +HGV RV
Sbjct:   69 GFHVIPSALDEKTQLQFAHACLTEFPEVP-HLTNMHQQNQQVS------------------------------------NIWQKARRSHPQNPAE--SPLLAKLCWAALGYHYDWTARKYHRYRYSPVPELLQQLGVRCAAACGMTLAVEAIIVNYYKMKSSMGGHRDDVEYTMDHPVVSLSLGSPCLFLLGGHTKDEVPLEILLRSGDVVIMGGASRTCYHGVARV 256          
BLAST of mRNA_P-wetherbeei_contig678.3.1 vs. uniprot
Match: A0A024UCC3_9STRA (Alkylated DNA repair protein AlkB n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UCC3_9STRA)

HSP 1 Score: 149 bits (376), Expect = 1.160e-35
Identity = 89/244 (36.48%), Postives = 123/244 (50.41%), Query Frame = 3
Query:  432 DGFLFMPGALSQSEQLHLAKACLENYIEPPLAVTNLAAIAEKLNGDGKKGGGGSDSGASGVGDGGSSVRSGSRPVPRAPCNIWRSALAAGHHVPPKLGATPLGKLSFATLGYHYDWTARRYTPDRRG-PVPVELADLGRRLAKRVGFDLEPEAVICNFYSASRRMGGHRDDLELALEAPVVVVSLGRPAVFLLGGLRREDPAAPCVVRSGDVLILGGASRLRFHGVPRVYGP---DDWPSRERR 1151
            +GF  +P AL    Q  LA  CL  Y EPP   TNL  + +++                                      IW+ +L   +         P+  L +A LGYHYDWT R Y PD+ G P+P EL  LG + A  VGF+L  EA + N+Y  +  MGGH+DD+E+  + PVV +S+G  A+FL GGL +E      +VRSGDV+I+GG SRL FHG+ ++      D +P  E+R
Sbjct:   74 EGFYVIPDALDHDTQRMLAVKCLTEYAEPP-HTTNLHQLNQQVE------------------------------------QIWQKSLNCAN----AKTKDPMQSLHWAALGYHYDWTQRAY-PDQAGSPIPEELGTLGTKFASAVGFELLSEAALVNYYKPTSTMGGHQDDVEVTFDHPVVSLSIGCSAIFLKGGLSKEIAPLELLVRSGDVVIMGGNSRLCFHGIAKILPVLHLDAFPLSEQR 275          
BLAST of mRNA_P-wetherbeei_contig678.3.1 vs. uniprot
Match: A0A7S0ITN0_9EUKA (Hypothetical protein n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0ITN0_9EUKA)

HSP 1 Score: 150 bits (378), Expect = 1.370e-35
Identity = 95/247 (38.46%), Postives = 124/247 (50.20%), Query Frame = 3
Query:  405 AGVFSLKGCDGFLFMPGALSQSEQLHLAKACLENYIEPPLAVTNLAAIAEKLNGDGKKGGGGSDSGASGVGDGGSSVRSGSRPVPRAPCNIWRSALAAGHHVPPKLGATPLGKLSFATLGYHYDWTARRYTPDRRGPVPVELADLGRRLAKRVGFDLEPEAVICNFYSASRRMGGHRDDLELALEAPVVVVSLGRPAVFLLGGLRREDPAAPCVVRSGDVLILGGASRLRFHGVPRVYGPDDWPSRE 1145
            A +FS++G  GF F+ GALS   QL +A A L  + E        A     LN  G+                    RS           +W     A H   PK  ++ L KLS+ TLG+HY WT R Y P R  P P +LA L   LA+  G  +  EA I NFYSA   MGGH+DD E    AP++ +S+G PA+FLLGG  +++P    +VRSGDV++  G SR  +HGVPR+      P RE
Sbjct:   59 AAIFSVRGAPGFRFIRGALSADRQLEVAYAALTEWCE--------ADNESNLNAHGR-------------------TRS-----------LW-----AEHLSNPK--SSLLTKLSWLTLGHHYQWTERTYDPARVSPFPPQLAVLASELAQACGETMVAEAAIINFYSARSTMGGHKDDAEPCQAAPIISISIGLPAIFLLGGHTKDEPPIALLVRSGDVVVQAGESRGYYHGVPRILSAS--PPRE 258          
BLAST of mRNA_P-wetherbeei_contig678.3.1 vs. uniprot
Match: A0A662WXM3_9STRA (Fe2OG dioxygenase domain-containing protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WXM3_9STRA)

HSP 1 Score: 155 bits (391), Expect = 2.470e-35
Identity = 88/227 (38.77%), Postives = 113/227 (49.78%), Query Frame = 3
Query:  435 GFLFMPGALSQSEQLHLAKACLENYIEPPLAVTNLAAIAEKLNGDGKKGGGGSDSGASGVGDGGSSVRSGSRPVPRAPCNIWRSALAAGHHVPPKLGATPLGKLSFATLGYHYDWTARRYTPDRRGPVPVELADLGRRLAKRVGFDLEPEAVICNFYSASRRMGGHRDDLELALEAPVVVVSLGRPAVFLLGGLRREDPAAPCVVRSGDVLILGGASRLRFHGVPRV 1115
            GF  +P A+    QL  A +CL  Y E P  VTN+   ++ + G                                    IWR A  A  H P K  +  L KL +A  GYHYDWTAR+Y      PVP  L  L  R A+  G  L  EAVI NFY     MGGH+DD+E  ++ PVV +SLG   VFL GGL +++P    ++RSGD+ +LGG SR+ +HGV RV
Sbjct:   71 GFCVIPNAIDTETQLQFAHSCLTEYTEAP-HVTNMHLQSQSVAG------------------------------------IWRKARQAHPHDPAK--SPLLAKLHWAAAGYHYDWTARKYHDGNFSPVPALLERLATRCAEACGMTLAAEAVIVNFYKPKSHMGGHQDDVEYTMDHPVVSLSLGSSCVFLKGGLTKDEPPLELLLRSGDIAVLGGKSRMSYHGVARV 258          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig678.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G5A9_ECTSI9.410e-13438.16Vesicle docking protein P115 n=2 Tax=Ectocarpus Ta... [more]
A0A836C866_9STRA1.320e-7833.57Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A5D6XZR0_9STRA1.450e-4138.372OG-FeII_Oxy_2 domain-containing protein n=1 Tax=P... [more]
A0A8K1C4B3_PYTOL2.780e-4038.75Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A484DZD0_BRELC7.810e-3935.322OG-FeII_Oxy_2 domain-containing protein n=1 Tax=B... [more]
A0A1V9YH16_9STRA5.400e-3635.68Alkylated DNA repair protein alkB-like protein n=1... [more]
A0A0P1AMQ7_PLAHL7.370e-3638.33Alkylated dna repair protein n=1 Tax=Plasmopara ha... [more]
A0A024UCC3_9STRA1.160e-3536.48Alkylated DNA repair protein AlkB n=1 Tax=Aphanomy... [more]
A0A7S0ITN0_9EUKA1.370e-3538.46Hypothetical protein n=1 Tax=Calcidiscus leptoporu... [more]
A0A662WXM3_9STRA2.470e-3538.77Fe2OG dioxygenase domain-containing protein n=1 Ta... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig678contigP-wetherbeei_contig678:2894..8639 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7G5A9
Preferred nameUSO1
PFAMsUso1_p115_C,Uso1_p115_head
Model size5098
Max annot lvl2759|Eukaryota
KEGG koko:K11675,ko:K20361,ko:K20478
Hectar predicted targeting categorymitochondrion
GOsGO:0000139,GO:0001650,GO:0002009,GO:0002165,GO:0003674,GO:0005215,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005783,GO:0005794,GO:0005795,GO:0005798,GO:0005829,GO:0006810,GO:0006886,GO:0006888,GO:0006891,GO:0006900,GO:0006901,GO:0006903,GO:0006996,GO:0007030,GO:0007275,GO:0007346,GO:0007444,GO:0007472,GO:0007476,GO:0007552,GO:0007560,GO:0008104,GO:0008150,GO:0008565,GO:0009653,GO:0009791,GO:0009886,GO:0009887,GO:0009888,GO:0009987,GO:0010256,GO:0010389,GO:0010564,GO:0012505,GO:0012506,GO:0012507,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0016050,GO:0016192,GO:0019898,GO:0022406,GO:0022607,GO:0030133,GO:0030134,GO:0030135,GO:0030658,GO:0030659,GO:0030660,GO:0030662,GO:0031090,GO:0031312,GO:0031410,GO:0031974,GO:0031981,GO:0031982,GO:0031984,GO:0032501,GO:0032502,GO:0033036,GO:0034613,GO:0035107,GO:0035114,GO:0035120,GO:0035220,GO:0035239,GO:0035295,GO:0042802,GO:0042886,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044431,GO:0044433,GO:0044444,GO:0044446,GO:0044452,GO:0044464,GO:0044719,GO:0045056,GO:0045184,GO:0046907,GO:0048193,GO:0048194,GO:0048199,GO:0048207,GO:0048208,GO:0048211,GO:0048219,GO:0048278,GO:0048471,GO:0048513,GO:0048563,GO:0048569,GO:0048707,GO:0048729,GO:0048731,GO:0048736,GO:0048737,GO:0048856,GO:0050789,GO:0050794,GO:0051179,GO:0051234,GO:0051259,GO:0051260,GO:0051640,GO:0051641,GO:0051648,GO:0051649,GO:0051650,GO:0051656,GO:0051726,GO:0060429,GO:0060562,GO:0061024,GO:0061025,GO:0065003,GO:0065007,GO:0065008,GO:0070013,GO:0070727,GO:0071702,GO:0071705,GO:0071840,GO:0090066,GO:0090114,GO:0090498,GO:0097708,GO:0098588,GO:0098791,GO:0098805,GO:0140056,GO:1901987,GO:1901990,GO:1902749
Exons4
Evalue2.61e-138
EggNOG OGsKOG0946@1|root,KOG0946@2759|Eukaryota
DescriptionGolgi vesicle docking
Cds size3573
COG categoryO
BRITEko00000,ko03036,ko04131
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186937.0826755-UTR-P-wetherbeei_contig678:2893..37801683186937.0826755-UTR-P-wetherbeei_contig678:2893..3780Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig678 2894..3780 +
1683186937.0940738-UTR-P-wetherbeei_contig678:4011..46471683186937.0940738-UTR-P-wetherbeei_contig678:4011..4647Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig678 4012..4647 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186937.1050858-CDS-P-wetherbeei_contig678:4647..48151683186937.1050858-CDS-P-wetherbeei_contig678:4647..4815Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig678 4648..4815 +
1683186937.116179-CDS-P-wetherbeei_contig678:4894..52301683186937.116179-CDS-P-wetherbeei_contig678:4894..5230Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig678 4895..5230 +
1683186937.1301193-CDS-P-wetherbeei_contig678:5570..86391683186937.1301193-CDS-P-wetherbeei_contig678:5570..8639Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig678 5571..8639 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig678.3.1prot_P-wetherbeei_contig678.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig678 4648..8639 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig678.3.1

>prot_P-wetherbeei_contig678.3.1 ID=prot_P-wetherbeei_contig678.3.1|Name=mRNA_P-wetherbeei_contig678.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=1191bp
MGSWIFLTASVRRFNWRAAVFRCAWMKTKKRDSTAAMRLLRKLDHETGAM
APRDAAELLMERLTNAGDMGDRCEALEALLELSESHPAEVGQAGLSTFTD
ILQAGVADESMAQSIIEIMLNLVTSRDDIHRHAVAANIAGILTDVANVQN
LLDLLESPDVLTALTAIRVLQQVQREAADSLEAAVLECPAGMQRLMDVLR
DPREEVRNEVILLLGQLTRGRSLEVKKFVAFQEGFERLARIMADEGMAEG
EGGVIVRDCLDVALNVLQGSPITQKLFCQSTALATFHELIDVRLLAPPPA
DDDNGSDGERDERRDAGANGDGGGGGGAAVDDWLTSGVQREIVSRAFDVL
ETLLAPTVDEAESNSGRSSTNGGGPSNGSSGGTAASAAALAQRAERQTAV
GRGGSGLLAELLVHDAVSRAEPYRRIPPELRARAMLLVASLIDGHPKNQR
IVGKCFVQDTGDASLELPALLVEGALAETGPTFGRLYHGLLEALFRGNEM
GCTEVVTHVIAPPPPPLDDDNLDLETWVPPTPPGKILLNRMAAAAGILLG
GGGDSAGSSGDGIIADGVGTADGGGGRGLEAAADALCGGCKVLAQLLRHG
DLTTKEIALRIPMAGLLGERKALLPCLMVWLHAASQAASGADETTSAAAS
AAPWAAGVCIALLQVLCRWIDGCRAAAHELLASPSNLFVVDLAGGKDIAA
ATTGAKAHVRGLSCLLLGLLLENVDGDGAGARSGAGARSEWDAAVVMAMV
ENRVGIPAFMAAVEAVRRSMADEAAARQQLARAAARTAGGARAATAAPSV
PSWVDPSFLPLLLKAAAQVRRRVIAVYTGAASAGGGEAPGVTDGRGGVGS
SSNCGGASAGGASCAEAASLLQAQEAEIADLRARLSEAESRIAIGPSGAT
DLEDRLRARTAAAEAELAAALAEAATLTARLAEAEAEAAAGVEEAARAVA
ELEGLAVGANALERQLVERDELVSQLRGQLATNSQSQREVQLQAELEAVR
AAATATAAGFDRERLALRRLVDEEAEVARRQATEEWSARCAALEAQAADS
RLALAASADREAAATTSAAKAYSPVTAGAAEAAAAAAAADGKASAIKAAV
AESVTSDDGRKLTDALARLEETEGWARDLEQALARQSQEAEAAAANAAET
AGRAAWYEAEASRLKAALREEQERHAEAVAALRAGLEEASA
back to top

mRNA from alignment at P-wetherbeei_contig678:2894..8639+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig678.3.1 ID=mRNA_P-wetherbeei_contig678.3.1|Name=mRNA_P-wetherbeei_contig678.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=5746bp|location=Sequence derived from alignment at P-wetherbeei_contig678:2894..8639+ (Phaeothamnion wetherbeei SAG_119_79)
GAGGTATTCCGGGTACGACGAAGCAGCGAGAGCAATACGAAGTTCAGGAG GCGCTGAGCCGCAATGCGTGATCGACTTTCACACCGTACGTTCACCCCTT TCGTTGCAATCCGTGCATCGTTTGCCGCCCTAAAGTAGGAGAGCGTACCG ATGGATGTGAGGTTGTTGAGAGGGACCTCCTGCTTTAATTGCCCAGACTG CAGTTGTGATGCATGTCTACAACCCACGTGTAGCGCTCAGGCAGGAGTTT TAATTGTTAAATGGAGAGCTTTAGCCTATCTCGCTCTTATTTTTCCGATA GCTTTGTCGACGGCAGCTTATCCATTTCTTCCTTTCTGCCCCGCGTGCTT GGTAGGTAGGCGAGCCAATCCGTTGACCAAACCGTCGTCCGCATTACCGA CGATGCTGGTGTGTTCTCGCTGAAAGGATGCGACGGCTTCTTGTTCATGC CAGGCGCCTTGTCCCAGTCGGAGCAGCTCCACCTGGCGAAGGCATGCCTT GAAAATTACATCGAGCCGCCTCTTGCCGTCACGAACCTCGCCGCGATCGC CGAGAAGCTGAATGGCGACGGCAAAAAGGGCGGCGGCGGCAGCGACAGCG GCGCGAGCGGCGTTGGCGACGGTGGTAGCAGCGTCAGGAGCGGTAGCCGA CCTGTACCACGAGCGCCTTGCAACATTTGGCGGTCAGCGCTGGCGGCGGG CCACCACGTACCCCCGAAGCTCGGCGCCACACCGCTGGGCAAGCTGTCGT TCGCCACTCTTGGCTACCACTACGACTGGACCGCCCGCCGATACACGCCG GATCGCCGCGGCCCCGTGCCGGTGGAGCTGGCGGACCTGGGGCGTCGGCT GGCAAAGCGCGTCGGCTTTGATCTCGAGCCTGAGGCAGTGAGTCTGCGGC CGTTTTGTTTACTCTCTCACGTCTACTTTTGGACTCCTTTCGCCCCTTCT TTGCCACTTTTCTCGCCTCCTCCCGTTTGCTGACTGCATTGTAATCTTCT CCACCATCTATTCTGATGGTTGCCTATTTCTGTTCGGTTCTCTATATGGT ACTTAGACGTTTCCTCTTGCTGGGTTCTCATTCGAGCTCCTTCCTGCGTT TTTGCTTGAGAACCGTAGGTTATCTGCAACTTCTACAGCGCATCCCGGCG CATGGGCGGCCACCGCGACGACTTGGAGCTGGCGCTGGAAGCTCCTGTGG TGGTTGTCAGCCTCGGCCGCCCTGCCGTCTTTCTGCTCGGCGGCCTGCGG CGGGAGGATCCAGCGGCGCCGTGCGTGGTGCGCTCCGGGGACGTGCTCAT CCTGGGCGGGGCATCGCGGCTGCGGTTCCACGGCGTGCCCCGCGTTTACG GGCCGGATGACTGGCCATCCAGGGAAAGAAGAGAGGGGTCCGGAGGCGGC GATGCTTCTAGCGGTAACAGCGCTGGCGGTGACGGCGGTGGCTGCGGCTG CGGCGATAGCGGTGCCAATGGTGGTGATTGCCGCGACAGCAGCAACCACC GGGAAGGCGGCGATGGCGACAGTAGTAATGGCGGCAGCGAAGCCCGCCGG GGGGGCCGCCGGGGCAGCGCCGTCGGCTGCGACGGACGTGGCGGGGAGGC AGCAGATGCCAGTGCACACAAGGCAGAGCCACAGGGAAGTGGCGAGGACT ACGACGGCGCCGTGGCCGCGTTTTTGCGGCACACTCGGCTGTCCCTGACG TTTCGGCAGGTGCTACCAACAGGAGAAGGGTTCCGGCCGAGCGATAGCGA CTGAATGGGCAGCTGGATTTTTTTAACCGCGAGTGTGCGACGGTTTAATT GGCGCGCCGCCGTTTTCCGGTGCGCTTGGATGAAAACGAAGAAGAGGGAC AGCACGGCGGCAATGAGGTTGCTGCGAAAGCTAGACCACGAGACCGGAGC GATGGCGCCGCGAGACGCCGCTGTAAGTATGTCCTCAAAAGTTTTTACAT TTTCCTTCGCTCGTCTTACTACTCCCCGTTCTCGTCGTCTCGGTCATGCA GGAGCTCTTGATGGAACGGTTGACTAATGCGGGCGACATGGGCGACCGCT GTGAGGCGCTGGAGGCATTGCTGGAGCTGTCTGAATCCCACCCCGCCGAA GTTGGGCAGGCAGGGCTTTCGACGTTCACAGACATTCTACAGGCCGGCGT GGCTGACGAATCTATGGCGCAATCGATCATTGAGATCATGCTCAACCTCG TCACGTCCCGAGACGACATCCATCGGCATGCCGTGGCGGCCAACATTGCA GGCATTCTCACGGATGTCGCGAATGTGCAAAACCTCCTTGATCTGCTCGA GTCGCCGGACGTCCTTACGGCTCTCACCGCGATTAGGGTGCGTAAAGAAT GCCGGATTGCTTCAAATTATTTTTGTTCCCTGTGTTAAAGGGAAGACTTC AGCTCAAAGTGTTGTCTTCCCATGACCATCTTGGCATTTTCGTCTACGGT GGTCGAGTTCACTGCCTCTCCTTCTCTTCTCTCCGTTGCCAATGCGGGAA TATTGCACCACGGGGCCTGGTCGGATGTGGCGATTCCTCACGGTAGACAT GTCTAGTAGAGCACGTTTCTTCGCAAAGGCTACCGATAGTTGCTTTTCTC TGTTTCCCCTTCCGTCTAAGCTTTATTTCTCTCTGTCCGCTGGCCGCGGA CACACTTCTCCGGCCTGCAACCAACAGGTCTTGCAGCAGGTGCAGCGCGA AGCGGCGGACTCCCTCGAGGCAGCCGTCCTCGAGTGCCCCGCCGGTATGC AGCGCTTGATGGACGTCCTGCGGGACCCGCGCGAAGAGGTCCGCAACGAG GTGATATTGCTGCTCGGCCAGCTGACGCGTGGCCGCTCGCTCGAGGTGAA AAAGTTCGTCGCTTTTCAGGAAGGCTTCGAGCGGCTGGCCCGCATCATGG CGGACGAGGGCATGGCGGAGGGGGAGGGCGGCGTCATCGTCCGGGACTGT TTAGACGTGGCGCTCAATGTGCTGCAGGGCAGCCCCATCACGCAAAAGCT CTTCTGCCAGAGCACGGCGCTTGCCACGTTCCACGAGCTCATCGATGTAC GGCTGCTGGCACCGCCGCCTGCCGACGACGATAACGGCAGCGACGGCGAA CGCGACGAAAGGAGAGATGCAGGAGCCAACGGCGATGGCGGCGGCGGAGG CGGCGCTGCTGTGGACGACTGGCTGACCAGCGGAGTCCAGCGCGAGATCG TATCCCGTGCCTTCGACGTGCTGGAGACGCTGCTGGCGCCGACGGTTGAC GAGGCGGAAAGTAACAGCGGCAGGAGCAGCACCAACGGCGGCGGCCCCAG CAACGGCAGCAGCGGCGGAACTGCGGCGTCGGCGGCTGCCTTGGCGCAGC GGGCAGAGCGACAGACGGCGGTGGGCCGCGGCGGCAGTGGGCTCCTGGCG GAGCTGCTCGTCCACGACGCCGTCTCCCGCGCCGAACCATACCGCCGCAT CCCGCCGGAGCTGCGGGCGCGCGCCATGCTTCTCGTGGCGTCTCTTATAG ACGGCCACCCGAAAAACCAGCGGATCGTCGGGAAGTGTTTCGTGCAGGAC ACCGGCGACGCGTCGCTTGAGCTGCCGGCGCTGCTGGTGGAGGGCGCGCT GGCGGAGACGGGCCCCACCTTTGGCCGGTTATATCACGGCCTACTGGAGG CGCTGTTCCGTGGCAACGAGATGGGGTGCACCGAGGTGGTGACACATGTC ATCGCACCGCCGCCGCCGCCGCTCGATGACGACAACCTGGACCTGGAGAC GTGGGTGCCGCCGACCCCGCCGGGCAAGATTTTGCTGAACCGAATGGCCG CCGCTGCCGGGATTTTGCTAGGCGGCGGCGGCGACAGTGCTGGAAGCAGC GGCGACGGCATCATTGCAGACGGTGTCGGCACTGCGGATGGCGGCGGCGG CAGGGGGTTGGAGGCGGCGGCAGACGCGCTGTGCGGGGGCTGCAAGGTCC TGGCGCAGCTTTTGAGGCACGGCGACCTTACCACAAAAGAGATCGCACTG CGGATCCCCATGGCCGGGCTCCTGGGCGAGCGCAAGGCGCTGCTGCCGTG CCTCATGGTCTGGCTGCACGCGGCGTCGCAGGCGGCGTCCGGTGCCGACG AGACGACATCCGCGGCTGCGAGTGCGGCGCCTTGGGCGGCGGGCGTCTGC ATTGCGCTGCTGCAGGTGCTGTGCAGATGGATCGACGGCTGCCGGGCCGC GGCGCACGAGCTGCTGGCGTCGCCTTCGAATTTGTTTGTCGTGGACCTCG CCGGCGGCAAAGACATCGCCGCCGCCACGACGGGGGCCAAAGCACACGTG CGGGGCCTCAGTTGCCTATTGCTTGGCTTGCTCTTGGAGAATGTCGATGG GGACGGCGCTGGCGCTCGTAGCGGCGCCGGCGCGCGAAGCGAATGGGATG CAGCGGTGGTGATGGCGATGGTAGAAAATAGAGTTGGCATTCCAGCGTTT ATGGCTGCAGTGGAAGCGGTGCGGCGCAGCATGGCCGACGAGGCTGCGGC GCGACAGCAGTTGGCGCGGGCGGCGGCGCGGACGGCAGGAGGCGCCCGAG CGGCCACGGCAGCACCTTCAGTCCCGTCATGGGTCGACCCAAGCTTTTTG CCGCTGTTGCTTAAGGCGGCCGCGCAGGTGCGGCGACGTGTCATCGCCGT CTATACCGGCGCAGCGTCCGCCGGCGGCGGCGAAGCGCCCGGCGTCACCG ATGGGAGAGGCGGCGTCGGCAGCTCATCGAATTGTGGCGGCGCATCCGCC GGCGGCGCCAGCTGTGCCGAGGCGGCATCGCTGCTTCAGGCGCAGGAGGC CGAGATTGCCGACCTCCGGGCGCGACTCTCGGAGGCCGAGAGCCGCATCG CCATCGGGCCCTCGGGGGCGACGGACCTCGAAGACCGGCTGCGGGCGCGG ACGGCGGCCGCCGAGGCGGAGCTCGCCGCCGCGCTGGCCGAGGCAGCGAC GCTGACGGCGCGGCTGGCGGAGGCGGAAGCGGAGGCGGCTGCAGGCGTCG AGGAGGCGGCGCGAGCGGTGGCAGAGCTGGAAGGGCTGGCGGTCGGCGCC AACGCGCTGGAGCGGCAGCTGGTGGAACGAGACGAGCTGGTTAGCCAGCT CCGCGGCCAGCTGGCCACCAACAGCCAGTCGCAGCGCGAGGTGCAGCTGC AGGCGGAGCTGGAGGCGGTGCGGGCGGCGGCGACTGCGACGGCAGCGGGT TTCGACCGCGAGCGGCTGGCGCTACGGCGGTTGGTCGACGAGGAGGCCGA GGTGGCGCGGCGGCAGGCGACGGAGGAGTGGTCCGCCCGCTGCGCCGCAC TCGAAGCGCAGGCGGCGGACAGCCGACTGGCCCTGGCGGCATCTGCCGAC AGGGAGGCGGCGGCGACGACTTCGGCGGCAAAGGCGTATTCTCCGGTGAC AGCAGGGGCAGCCGAAGCTGCGGCGGCGGCGGCGGCGGCGGACGGCAAGG CATCGGCAATAAAGGCAGCTGTGGCGGAATCGGTGACGAGCGACGACGGG CGCAAGCTGACCGACGCGTTGGCGCGACTCGAGGAGACGGAAGGGTGGGC TCGCGACCTCGAGCAGGCGCTGGCGCGGCAGTCGCAGGAGGCCGAAGCGG CCGCGGCGAACGCGGCCGAGACCGCGGGGCGGGCGGCGTGGTACGAAGCG GAGGCCTCGAGGCTCAAGGCGGCGCTCCGCGAGGAGCAGGAGCGACATGC CGAGGCCGTAGCGGCGCTGCGGGCCGGGCTGGAGGAGGCCAGCGCC
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig678:2894..8639+

>mRNA_P-wetherbeei_contig678.3.1 ID=mRNA_P-wetherbeei_contig678.3.1|Name=mRNA_P-wetherbeei_contig678.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=3573bp|location=Sequence derived from alignment at P-wetherbeei_contig678:2894..8639+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGGCAGCTGGATTTTTTTAACCGCGAGTGTGCGACGGTTTAATTGGCG
CGCCGCCGTTTTCCGGTGCGCTTGGATGAAAACGAAGAAGAGGGACAGCA
CGGCGGCAATGAGGTTGCTGCGAAAGCTAGACCACGAGACCGGAGCGATG
GCGCCGCGAGACGCCGCTGAGCTCTTGATGGAACGGTTGACTAATGCGGG
CGACATGGGCGACCGCTGTGAGGCGCTGGAGGCATTGCTGGAGCTGTCTG
AATCCCACCCCGCCGAAGTTGGGCAGGCAGGGCTTTCGACGTTCACAGAC
ATTCTACAGGCCGGCGTGGCTGACGAATCTATGGCGCAATCGATCATTGA
GATCATGCTCAACCTCGTCACGTCCCGAGACGACATCCATCGGCATGCCG
TGGCGGCCAACATTGCAGGCATTCTCACGGATGTCGCGAATGTGCAAAAC
CTCCTTGATCTGCTCGAGTCGCCGGACGTCCTTACGGCTCTCACCGCGAT
TAGGGTCTTGCAGCAGGTGCAGCGCGAAGCGGCGGACTCCCTCGAGGCAG
CCGTCCTCGAGTGCCCCGCCGGTATGCAGCGCTTGATGGACGTCCTGCGG
GACCCGCGCGAAGAGGTCCGCAACGAGGTGATATTGCTGCTCGGCCAGCT
GACGCGTGGCCGCTCGCTCGAGGTGAAAAAGTTCGTCGCTTTTCAGGAAG
GCTTCGAGCGGCTGGCCCGCATCATGGCGGACGAGGGCATGGCGGAGGGG
GAGGGCGGCGTCATCGTCCGGGACTGTTTAGACGTGGCGCTCAATGTGCT
GCAGGGCAGCCCCATCACGCAAAAGCTCTTCTGCCAGAGCACGGCGCTTG
CCACGTTCCACGAGCTCATCGATGTACGGCTGCTGGCACCGCCGCCTGCC
GACGACGATAACGGCAGCGACGGCGAACGCGACGAAAGGAGAGATGCAGG
AGCCAACGGCGATGGCGGCGGCGGAGGCGGCGCTGCTGTGGACGACTGGC
TGACCAGCGGAGTCCAGCGCGAGATCGTATCCCGTGCCTTCGACGTGCTG
GAGACGCTGCTGGCGCCGACGGTTGACGAGGCGGAAAGTAACAGCGGCAG
GAGCAGCACCAACGGCGGCGGCCCCAGCAACGGCAGCAGCGGCGGAACTG
CGGCGTCGGCGGCTGCCTTGGCGCAGCGGGCAGAGCGACAGACGGCGGTG
GGCCGCGGCGGCAGTGGGCTCCTGGCGGAGCTGCTCGTCCACGACGCCGT
CTCCCGCGCCGAACCATACCGCCGCATCCCGCCGGAGCTGCGGGCGCGCG
CCATGCTTCTCGTGGCGTCTCTTATAGACGGCCACCCGAAAAACCAGCGG
ATCGTCGGGAAGTGTTTCGTGCAGGACACCGGCGACGCGTCGCTTGAGCT
GCCGGCGCTGCTGGTGGAGGGCGCGCTGGCGGAGACGGGCCCCACCTTTG
GCCGGTTATATCACGGCCTACTGGAGGCGCTGTTCCGTGGCAACGAGATG
GGGTGCACCGAGGTGGTGACACATGTCATCGCACCGCCGCCGCCGCCGCT
CGATGACGACAACCTGGACCTGGAGACGTGGGTGCCGCCGACCCCGCCGG
GCAAGATTTTGCTGAACCGAATGGCCGCCGCTGCCGGGATTTTGCTAGGC
GGCGGCGGCGACAGTGCTGGAAGCAGCGGCGACGGCATCATTGCAGACGG
TGTCGGCACTGCGGATGGCGGCGGCGGCAGGGGGTTGGAGGCGGCGGCAG
ACGCGCTGTGCGGGGGCTGCAAGGTCCTGGCGCAGCTTTTGAGGCACGGC
GACCTTACCACAAAAGAGATCGCACTGCGGATCCCCATGGCCGGGCTCCT
GGGCGAGCGCAAGGCGCTGCTGCCGTGCCTCATGGTCTGGCTGCACGCGG
CGTCGCAGGCGGCGTCCGGTGCCGACGAGACGACATCCGCGGCTGCGAGT
GCGGCGCCTTGGGCGGCGGGCGTCTGCATTGCGCTGCTGCAGGTGCTGTG
CAGATGGATCGACGGCTGCCGGGCCGCGGCGCACGAGCTGCTGGCGTCGC
CTTCGAATTTGTTTGTCGTGGACCTCGCCGGCGGCAAAGACATCGCCGCC
GCCACGACGGGGGCCAAAGCACACGTGCGGGGCCTCAGTTGCCTATTGCT
TGGCTTGCTCTTGGAGAATGTCGATGGGGACGGCGCTGGCGCTCGTAGCG
GCGCCGGCGCGCGAAGCGAATGGGATGCAGCGGTGGTGATGGCGATGGTA
GAAAATAGAGTTGGCATTCCAGCGTTTATGGCTGCAGTGGAAGCGGTGCG
GCGCAGCATGGCCGACGAGGCTGCGGCGCGACAGCAGTTGGCGCGGGCGG
CGGCGCGGACGGCAGGAGGCGCCCGAGCGGCCACGGCAGCACCTTCAGTC
CCGTCATGGGTCGACCCAAGCTTTTTGCCGCTGTTGCTTAAGGCGGCCGC
GCAGGTGCGGCGACGTGTCATCGCCGTCTATACCGGCGCAGCGTCCGCCG
GCGGCGGCGAAGCGCCCGGCGTCACCGATGGGAGAGGCGGCGTCGGCAGC
TCATCGAATTGTGGCGGCGCATCCGCCGGCGGCGCCAGCTGTGCCGAGGC
GGCATCGCTGCTTCAGGCGCAGGAGGCCGAGATTGCCGACCTCCGGGCGC
GACTCTCGGAGGCCGAGAGCCGCATCGCCATCGGGCCCTCGGGGGCGACG
GACCTCGAAGACCGGCTGCGGGCGCGGACGGCGGCCGCCGAGGCGGAGCT
CGCCGCCGCGCTGGCCGAGGCAGCGACGCTGACGGCGCGGCTGGCGGAGG
CGGAAGCGGAGGCGGCTGCAGGCGTCGAGGAGGCGGCGCGAGCGGTGGCA
GAGCTGGAAGGGCTGGCGGTCGGCGCCAACGCGCTGGAGCGGCAGCTGGT
GGAACGAGACGAGCTGGTTAGCCAGCTCCGCGGCCAGCTGGCCACCAACA
GCCAGTCGCAGCGCGAGGTGCAGCTGCAGGCGGAGCTGGAGGCGGTGCGG
GCGGCGGCGACTGCGACGGCAGCGGGTTTCGACCGCGAGCGGCTGGCGCT
ACGGCGGTTGGTCGACGAGGAGGCCGAGGTGGCGCGGCGGCAGGCGACGG
AGGAGTGGTCCGCCCGCTGCGCCGCACTCGAAGCGCAGGCGGCGGACAGC
CGACTGGCCCTGGCGGCATCTGCCGACAGGGAGGCGGCGGCGACGACTTC
GGCGGCAAAGGCGTATTCTCCGGTGACAGCAGGGGCAGCCGAAGCTGCGG
CGGCGGCGGCGGCGGCGGACGGCAAGGCATCGGCAATAAAGGCAGCTGTG
GCGGAATCGGTGACGAGCGACGACGGGCGCAAGCTGACCGACGCGTTGGC
GCGACTCGAGGAGACGGAAGGGTGGGCTCGCGACCTCGAGCAGGCGCTGG
CGCGGCAGTCGCAGGAGGCCGAAGCGGCCGCGGCGAACGCGGCCGAGACC
GCGGGGCGGGCGGCGTGGTACGAAGCGGAGGCCTCGAGGCTCAAGGCGGC
GCTCCGCGAGGAGCAGGAGCGACATGCCGAGGCCGTAGCGGCGCTGCGGG
CCGGGCTGGAGGAGGCCAGCGCC
back to top