mRNA_P-wetherbeei_contig678.1.4 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig678.1.4 vs. uniprot
Match: H3B371_LATCH (PYM homolog 1, exon junction complex associated factor n=2 Tax=Latimeria chalumnae TaxID=7897 RepID=H3B371_LATCH) HSP 1 Score: 80.1 bits (196), Expect = 1.540e-13 Identity = 82/205 (40.00%), Postives = 113/205 (55.12%), Query Frame = 1
Query: 1 LPGSRRPDGTLRPERKIKPGYVPPDEVGRYETRQDKVCANIPIFQFLLNLHSTMSATNAASGSNSTAAQGKSAKRNXXXXXXXXXXXXXAKADADADDRDAADLAAETLAVSVAAMGVQDAQDVAEAEEKKVCLSAFESA--------------SWKIKNLRKKIRLIDDLQAKVDSGGVA-PSEEQAQKLSRRPALAAELKALE 570
+P ++RPDGT R R++K GYVP +EV YE + K + P LN A A + TA K+AKRN XXXXXXXXXXX D D +A + A E A++ GV + A ++ +V ++A +S S K+KNL+KK+R I++LQ KVDSG + P++EQ +KL RR AL EL+ LE
Sbjct: 16 IPATQRPDGTWRKPRRVKEGYVPQEEVPVYENKYVKFFKSKPDLPPGLNPEDAAQAKPPAKAESETAGLSKAAKRNLKXXXXXXXXXXXXGED----DTEALNDAMERTAIA----GVTEQSSKALHQDARVAVAATKSQNATEQSKQDGATEKSKKVKNLKKKLRQIEELQQKVDSGEIQQPTKEQMEKLGRRKALEEELEDLE 212
BLAST of mRNA_P-wetherbeei_contig678.1.4 vs. uniprot
Match: D7FZH2_ECTSI (Mago-bind domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FZH2_ECTSI) HSP 1 Score: 75.9 bits (185), Expect = 3.310e-12 Identity = 87/198 (43.94%), Postives = 111/198 (56.06%), Query Frame = 1
Query: 1 LPGSRRPDGTLRPERKIKPGYVPPDEVGRYETRQDKVCANIPIFQFLLNLHSTMSATNAASGSNS--TAAQGKSAKRNXXXXXXXXXXXXXAKADADADDR--DAADLAAETLA---VSVAAMGVQDAQDVAEAEEKKVCLSAFESASWKIKNLRKKIRLIDDLQAKVDSGGVAPSEEQAQKLSRRPALAAELKALES 573
LP ++RPDGT R ER+IK GY+P DEV ++ETR + ++L N A +AS N TAAQ K+ R XXXXXXXXXXXXX D + AA+ L VS G Q +E +SA KIK L KKIR +++L+AKV SG V P+EEQ QKL+R+PAL AEL L++
Sbjct: 19 LPATQRPDGTWRKERRIKKGYIPQDEVAKFETRGTQNQ------KYLKNRLPPGMAPESASEPNKPLTAAQKKNQARXXXXXXXXXXXXXXXXXXXXXXXXXXDGVETAAKALGGLKVSAGGGGASGEQTASE---------PLDSAR-KIKALNKKIRQVEELEAKVTSGEVVPTEEQRQKLARKPALVAELAELQA 200
BLAST of mRNA_P-wetherbeei_contig678.1.4 vs. uniprot
Match: A0A8C1N5P4_CYPCA (Partner of Y14 and mago B-like n=3 Tax=Cyprinus carpio TaxID=7962 RepID=A0A8C1N5P4_CYPCA) HSP 1 Score: 75.1 bits (183), Expect = 9.780e-12 Identity = 67/191 (35.08%), Postives = 94/191 (49.21%), Query Frame = 1
Query: 1 LPGSRRPDGTLRPERKIKPGYVPPDEVGRYETRQDKVCANIPIFQFLLNLHSTMSATNAASGSNSTAAQGKSAKRNXXXXXXXXXXXXXAKADADADDRDAADLAAETLAVSVAAMGVQDAQDVAEAEEKKVCLSAFESASWKIKNLRKKIRLIDDLQAKVDSGGV-APSEEQAQKLSRRPALAAELKALE 570
+ ++RPDGT R R++K GYVP +EV YE + K + P +N A + A + A K+AKRN K + A D+ + L+ + AM V + Q AE + +A + KIKNLRKK+R +++LQ KVDSG + PS+EQ KL R AL EL LE
Sbjct: 41 IAATQRPDGTWRKPRRVKDGYVPQEEVPVYENKYVKFFKSKPELPPGMNPEDAAQAASGAQKQSDAAGLSKTAKRNMKRKEKR-------KQQSQTPQEAAEDV--KGLSKELDAMKVTEEQKRVTAEPEAADPTAAAEKAKKIKNLRKKLRQVEELQQKVDSGELKTPSKEQLDKLGRGQALRDELSLLE 222
BLAST of mRNA_P-wetherbeei_contig678.1.4 vs. uniprot
Match: UPI00201438EB (partner of Y14 and mago n=1 Tax=Megalobrama amblycephala TaxID=75352 RepID=UPI00201438EB) HSP 1 Score: 73.9 bits (180), Expect = 1.410e-11 Identity = 76/191 (39.79%), Postives = 104/191 (54.45%), Query Frame = 1
Query: 1 LPGSRRPDGTLRPERKIKPGYVPPDEVGRYETRQDKVCANIPIFQFLLNLHSTMSATNAASGSNSTAAQGKSAKRNXXXXXXXXXXXXXAKADADADDRDAADLAAETLAVSVAAMGVQDAQDVAEAEEKKVCLSAFESASWKIKNLRKKIRLIDDLQAKVDSGGV-APSEEQAQKLSRRPALAAELKALE 570
+ ++RPDGT R R++K GYVP +EV YE + K + P +N A++ A TA K+AKRN XXXXXXXXXX + D A L+ E V V+ +D + V E +A + KIKNLRKK+R +++LQ K+ SG + +PS+EQ KL R AL AEL+ LE
Sbjct: 14 IAATQRPDGTWRKPRRVKDGYVPQEEVPVYENKYVKFFKSKPDLPPGMNPEDAAQASSGAEKQGDTAGLSKTAKRNMKRXXXXXXXXXXQQEDVKA-------LSEELDGVKVS----EDEKRVNPEPEGTDPTAAAAEKAKKIKNLRKKLRQVEELQQKISSGELKSPSKEQLDKLGRGQALRAELQLLE 193
BLAST of mRNA_P-wetherbeei_contig678.1.4 vs. uniprot
Match: A0A672MWB3_SINGR (Partner of Y14 and mago-like n=10 Tax=Cyprininae TaxID=2743694 RepID=A0A672MWB3_SINGR) HSP 1 Score: 73.9 bits (180), Expect = 1.440e-11 Identity = 69/191 (36.13%), Postives = 94/191 (49.21%), Query Frame = 1
Query: 1 LPGSRRPDGTLRPERKIKPGYVPPDEVGRYETRQDKVCANIPIFQFLLNLHSTMSATNAASGSNSTAAQGKSAKRNXXXXXXXXXXXXXAKADADADDRDAADLAAETLAVSVAAMGVQDAQDVAEAEEKKVCLSAFESASWKIKNLRKKIRLIDDLQAKVDSGGV-APSEEQAQKLSRRPALAAELKALE 570
+ ++RPDGT R R++K GYVP +EV YE + K + P +N A + A + A K+AKRN K + A D+ A L+ + M V + AE + +A E+A KIKNLRKK+R +++LQ KVDSG + PS EQ KL R AL ELK LE
Sbjct: 14 IAATQRPDGTWRRPRRVKDGYVPQEEVPVYENKYVKFFKSKPELPPGMNPEDAAQAVSGAQKQSDAAGLSKTAKRNMKRKEKR-------KQQSQTPQEAAEDVKA--LSKELDRMKVTEEDKRVMAEHEAADPTAAENAK-KIKNLRKKLRQVEELQQKVDSGELKTPSREQLDKLGRGQALRDELKLLE 194
BLAST of mRNA_P-wetherbeei_contig678.1.4 vs. uniprot
Match: A0A2D4MQM6_9SAUR (Mago-bind domain-containing protein (Fragment) n=15 Tax=Serpentes TaxID=8570 RepID=A0A2D4MQM6_9SAUR) HSP 1 Score: 73.9 bits (180), Expect = 2.270e-11 Identity = 81/202 (40.10%), Postives = 115/202 (56.93%), Query Frame = 1
Query: 1 LPGSRRPDGTLRPERKIKPGYVPPDEVGRYETRQDKVCANIPIFQFLLN--LHSTMSATNAASGSNSTAAQGKSAKRNXXXXXXXXXXXXXAKADADADDRDAADLAAETLAVSVAAMG-----VQDAQDVAEAEEKKVCLSAFESASW----KIKNLRKKIRLIDDLQAKVDSGGVA-PSEEQAQKLSRRPALAAELKALE 570
+ ++RPDGT R +R++K GYVP +EV YE + K + P LN +H+ ++ + K+AKRN XXXXXXXXX K D DADD L TL+ + ++ G V DA A + V LSA +A+ KIKNL+KK+R ++DLQA++DSG + P++EQ +KL+R AL EL+ LE
Sbjct: 21 IASTQRPDGTWRKQRRVKEGYVPQEEVPVYENKYVKFFKSKPELPPGLNPEVHTPVAHQMSKGPEGGETGLSKTAKRNLKXXXXXXXXXE--KGDRDADDL-IQSLEKTTLSATPSSCGDGKLAVSDANPRTPAGSRDV-LSASATATLEKNKKIKNLKKKLRQVEDLQARIDSGEIKQPTKEQLEKLARLKALEEELEDLE 218
BLAST of mRNA_P-wetherbeei_contig678.1.4 vs. uniprot
Match: UPI001CFA32E4 (partner of Y14 and mago n=1 Tax=Protopterus annectens TaxID=7888 RepID=UPI001CFA32E4) HSP 1 Score: 72.0 bits (175), Expect = 1.210e-10 Identity = 74/191 (38.74%), Postives = 103/191 (53.93%), Query Frame = 1
Query: 1 LPGSRRPDGTLRPERKIKPGYVPPDEVGRYETRQDKVCANIPIFQFLLNLHSTMSATNAASGSNSTAAQGKSAKRNXXXXXXXXXXXXXAKADADADDRDAADLAAETLAVSVAAMGVQDAQDVAEAEEKKVCLSAFESASWKIKNLRKKIRLIDDLQAKVDSGGVA-PSEEQAQKLSRRPALAAELKALE 570
+ ++RPDGT R R++K GYVP DEV YE + K + P LN N T+ K+AKRN XXXXXXXXXXXX + + ++ + ++A S A D E + A + KIKNL+KK+R +++LQ KVDSG + P++EQ +KL+RR AL EL+ LE
Sbjct: 44 IAATQRPDGTWRKPRRVKEGYVPQDEVPVYENKYVKFFKSKPDLPPGLNPEDIKQVKTPQKSENETSGLSKTAKRNLXXXXXXXXXXXXXEPEELSNSLEKVTISANGSLGSQATKQCSKTTDSTEQD-------ANSEKAKKIKNLKKKLRQVEELQQKVDSGEIKQPTKEQLEKLARRQALEEELEDLE 227
BLAST of mRNA_P-wetherbeei_contig678.1.4 vs. uniprot
Match: L1K1F1_GUITC (Mago-bind domain-containing protein n=2 Tax=Guillardia theta TaxID=55529 RepID=L1K1F1_GUITC) HSP 1 Score: 70.5 bits (171), Expect = 1.680e-10 Identity = 68/193 (35.23%), Postives = 105/193 (54.40%), Query Frame = 1
Query: 1 LPGSRRPDGTLRPERKIKPGYVPPDEVGRYETRQDKVCANIPIFQFLLNLHSTMSATNAASGSNSTAAQGKSAKRNXXXXXXXXXXXXXAKADADADDRDAADLAAETLAVSVAAMGVQDAQDVAEAEE-KKVCLSAFESASWKIKNLRKKIRLIDDLQAKVDSGGVAPSEEQAQKLSRRPALAAELKALESK 576
+P S+RPDGT R E K+K GYVPPDEV ++ETR K + I F+ + A + Q ++ XXXXXXXX AKA + D+ A GV+ AEA + ++ + E+ +I+NL+KK++ ID+L+ KVD G + P++EQA+K++ + A+ E+K LE++
Sbjct: 10 IPASQRPDGTWRKEVKVKKGYVPPDEVKKFETRGSK-WRDEQIPGFVPGMDPEAFAA---------SQQKPKSQHQRRNEXXXXXXXXAAKAGSSVDE---------------VAEGVEKVSLKAEAAKTEEAPMDPKEALQKRIRNLKKKLKQIDELKGKVDKGELTPNQEQAEKIASQAAVEQEIKTLEAE 177
BLAST of mRNA_P-wetherbeei_contig678.1.4 vs. uniprot
Match: UPI00192F6D47 (partner of Y14 and mago isoform X2 n=1 Tax=Crotalus tigris TaxID=88082 RepID=UPI00192F6D47) HSP 1 Score: 70.9 bits (172), Expect = 2.360e-10 Identity = 75/195 (38.46%), Postives = 109/195 (55.90%), Query Frame = 1
Query: 1 LPGSRRPDGTLRPERKIKPGYVPPDEVGRYETRQDKVCANIPIFQFLLN--LHSTMSATNAASGSNSTAAQGKSAKRNXXXXXXXXXXXXXAKADAD--ADDRDAADLAAETLAVSVAAMGVQDAQDVAEAEEKKVCLSAFESASWKIKNLRKKIRLIDDLQAKVDSGGVA-PSEEQAQKLSRRPALAAELKALE 570
+ ++RPDGT R +R++K GYVP +EV YE + K + P LN +H+ ++ + K+A XXXXXXXXXXXXX DAD + L+A + + V DA A A + V +A + KIKNL+KK+R +++LQA++DSG + P++EQ KL+RR AL EL+ LE
Sbjct: 19 IASTQRPDGTWRKQRRVKEGYVPQEEVPVYENKYVKFFKSKPELPPGLNPEVHTPVARQTSKGPEGGETGLSKTAXXXXXXXXXXXXXXXXXDQDADNLIQSLEKTTLSATPSSCGDGKLAVSDANPRASAGSRDVSATATLEKNKKIKNLKKKLRQVEELQARIDSGEIKQPTKEQLDKLARRKALEEELEDLE 213
BLAST of mRNA_P-wetherbeei_contig678.1.4 vs. uniprot
Match: A0A3N0Z5C1_ANAGA (Matrix metalloproteinase-19 n=1 Tax=Anabarilius grahami TaxID=495550 RepID=A0A3N0Z5C1_ANAGA) HSP 1 Score: 73.9 bits (180), Expect = 2.820e-10 Identity = 76/191 (39.79%), Postives = 103/191 (53.93%), Query Frame = 1
Query: 1 LPGSRRPDGTLRPERKIKPGYVPPDEVGRYETRQDKVCANIPIFQFLLNLHSTMSATNAASGSNSTAAQGKSAKRNXXXXXXXXXXXXXAKADADADDRDAADLAAETLAVSVAAMGVQDAQDVAEAEEKKVCLSAFESASWKIKNLRKKIRLIDDLQAKVDSGGV-APSEEQAQKLSRRPALAAELKALE 570
+ ++RPDGT R R++K GYVP +EV YE + K + P +N A++ A A K+AKRN XXXXXXXXX + D A L+ E AV V+ +D + V E +A + KIKNLRKK+R +++LQ KV SG + +PS+EQ KL R AL AEL+ LE
Sbjct: 40 IAATQRPDGTWRKPRRVKDGYVPQEEVPVYENKYVKFFKSKPDLPPGMNPEDAAQASSGAEKQGDAAGLSKTAKRNMKRXXXXXXXXXSQQEDVKA-------LSEELDAVKVS----EDEKRVNPEPEGTDPTAAAAEKAKKIKNLRKKLRQVEELQQKVSSGELKSPSKEQLDKLGRGQALRAELQLLE 219 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig678.1.4 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig678.1.4 >prot_P-wetherbeei_contig678.1.4 ID=prot_P-wetherbeei_contig678.1.4|Name=mRNA_P-wetherbeei_contig678.1.4|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=266bp MSATNAASGSNSTAAQGKSAKRNANKKKKKELAALLAKADADADDRDAADback to top mRNA from alignment at P-wetherbeei_contig678:749..2678+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig678.1.4 ID=mRNA_P-wetherbeei_contig678.1.4|Name=mRNA_P-wetherbeei_contig678.1.4|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1930bp|location=Sequence derived from alignment at P-wetherbeei_contig678:749..2678+ (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig678:749..2678+ >mRNA_P-wetherbeei_contig678.1.4 ID=mRNA_P-wetherbeei_contig678.1.4|Name=mRNA_P-wetherbeei_contig678.1.4|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=798bp|location=Sequence derived from alignment at P-wetherbeei_contig678:749..2678+ (Phaeothamnion wetherbeei SAG_119_79)back to top |