mRNA_P-wetherbeei_contig6771.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6771.1.1
Unique NamemRNA_P-wetherbeei_contig6771.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig6771.1.1 vs. uniprot
Match: L1K4C4_GUITC (Uncharacterized protein n=2 Tax=Guillardia theta TaxID=55529 RepID=L1K4C4_GUITC)

HSP 1 Score: 139 bits (349), Expect = 1.900e-35
Identity = 67/124 (54.03%), Postives = 87/124 (70.16%), Query Frame = 1 
Query:    7 REGLGGSTMHMDGNGSFCAAGGLKAGRKRITCVESDDALLALRLANFTAYAKPGGSEQLVNDPT---------TPAVRAAWRQEGVRFGTFEITAGDGYVVPSSVPHEFINVEECLSVAWNFLP 351
            ++GLGGSTMH+DG GS  A GGLK G+K +T VE+ DA LAL++A F +YAKPGGS  L NDP          + +++  W    VR+GTFEI+AGD YV+P+ +PHEF+N E  LS+AWN LP
Sbjct:  266 KDGLGGSTMHLDGMGSLVAIGGLKCGKKLVTAVEACDASLALKIAGFKSYAKPGGSSFLTNDPVDRSFSGEEESCSLKDLWTMSHVRWGTFEISAGDAYVIPAGMPHEFLNQEPSLSIAWNILP 389
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BLAST of mRNA_P-wetherbeei_contig6771.1.1 vs. uniprot
Match: D7FUF1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUF1_ECTSI)

HSP 1 Score: 134 bits (336), Expect = 1.120e-33
Identity = 70/138 (50.72%), Postives = 90/138 (65.22%), Query Frame = 1 
Query:    1 KVREGLGGSTMHMDGNGSFCAAGGLKAGRKRITCVESDDALLALRLANFTAYAKPGGSEQLVND--PTTPAVRAAWRQEGVRFGTFEITAGDGYVVPSSVPHEFINVEECLSVAWNFLPPPCACGLALAVSGAARKEA 408
            K R+ +GGST HMDG GSF A GGLKAG K +T  ES+D   AL +A F A+AKPGGS  +VND       +R    + GVR+ TF I  G+ Y+VPS   HEF+NV  CLSVAWN +P P  C +A+ ++ A+ +EA
Sbjct:    4 KGRDRIGGSTTHMDGMGSFTAIGGLKAGEKSVTAFESEDCATALAVAKFKAFAKPGGSSYVVNDRIDDDATLRNRLHRAGVRYRTFPIREGEAYLVPSGCLHEFMNVIPCLSVAWNIMPHPANCEVAMRMAEASAEEA 141
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BLAST of mRNA_P-wetherbeei_contig6771.1.1 vs. uniprot
Match: A0A6H5KVS1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVS1_9PHAE)

HSP 1 Score: 115 bits (288), Expect = 3.290e-27
Identity = 60/122 (49.18%), Postives = 79/122 (64.75%), Query Frame = 1 
Query:   49 GSFCAAGGLKAGRKRITCVESDDALLALRLANFTAYAKPGGSEQLVND--PTTPAVRAAWRQEGVRFGTFEITAGDGYVVPSSVPHEFINVEECLSVAWNFLPPPCACGLALAVSGAARKEA 408
            GSF A GGLKAG K +T  ES+D   AL +A F A+AKPGGS  +VND       +R  + + GVR+ TF I  G+ Y+VPS   HEF+NV  CLSVAWN +P P  C +A+ ++ A+ +EA
Sbjct:    2 GSFTAIGGLKAGEKSVTAFESEDCATALAVAKFKAFAKPGGSSYVVNDRIDDDATLRNRFHRAGVRYRTFPIREGEAYLVPSGCLHEFMNVIPCLSVAWNIMPHPANCEVAMRMAEASVEEA 123
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BLAST of mRNA_P-wetherbeei_contig6771.1.1 vs. uniprot
Match: A0A835YUU6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUU6_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 1.620e-15
Identity = 48/115 (41.74%), Postives = 63/115 (54.78%), Query Frame = 1 
Query:    1 KVREGLGGSTMHMDGNGSFCAAGGLKAGRKRITCVESDDALLALRLANFTAYAKPGG---------------------------SEQLVNDPTTPAVRAAWRQEGVRFGTFEITA 264
            ++R    GST H+DG GS  A+G +K G KRIT VE+ DAL AL+LA F+++AKP G                           S+ +VN+P   AVRAAWR  G+RFG  E+ A
Sbjct:  489 QIRRNFFGSTSHLDGMGSTSASGCIKLGTKRITFVEAGDALPALKLAEFSSFAKPAGAGGEREGGTRVRSLRHPRSAALRARRGSKHVVNNPIDNAVRAAWRSRGIRFGICELAA 603
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6771.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
L1K4C4_GUITC1.900e-3554.03Uncharacterized protein n=2 Tax=Guillardia theta T... [more]
D7FUF1_ECTSI1.120e-3350.72Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KVS1_9PHAE3.290e-2749.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YUU6_9STRA1.620e-1541.74Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6771contigP-wetherbeei_contig6771:2052..3057 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog55529.EKX55213
Model size408
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons3
Evalue3.2e-32
EggNOG OGs2EM7G@1|root,2SQY3@2759|Eukaryota
Cds size378
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186936.543191-UTR-P-wetherbeei_contig6771:2051..20811683186936.543191-UTR-P-wetherbeei_contig6771:2051..2081Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6771 2052..2081 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186936.5551076-CDS-P-wetherbeei_contig6771:2081..22031683186936.5551076-CDS-P-wetherbeei_contig6771:2081..2203Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6771 2082..2203 +
1683186936.565108-CDS-P-wetherbeei_contig6771:2474..26401683186936.565108-CDS-P-wetherbeei_contig6771:2474..2640Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6771 2475..2640 +
1683186936.5751362-CDS-P-wetherbeei_contig6771:2967..30571683186936.5751362-CDS-P-wetherbeei_contig6771:2967..3057Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6771 2968..3057 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6771.1.1prot_P-wetherbeei_contig6771.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6771 2082..3057 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6771.1.1

>prot_P-wetherbeei_contig6771.1.1 ID=prot_P-wetherbeei_contig6771.1.1|Name=mRNA_P-wetherbeei_contig6771.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=126bp
MHMDGNGSFCAAGGLKAGRKRITCVESDDALLALRLANFTAYAKPGGSEQ
LVNDPTTPAVRAAWRQEGVRFGTFEITAGDGYVVPSSVPHEFINVEECLS
VAWNFLPPPCACGLALAVSGAARKEA
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mRNA from alignment at P-wetherbeei_contig6771:2052..3057+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6771.1.1 ID=mRNA_P-wetherbeei_contig6771.1.1|Name=mRNA_P-wetherbeei_contig6771.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1006bp|location=Sequence derived from alignment at P-wetherbeei_contig6771:2052..3057+ (Phaeothamnion wetherbeei SAG_119_79)
AAAGTCCGCGAGGGGCTAGGCGGCTCCACGATGCACATGGACGGCAACGG
CAGCTTCTGCGCGGCCGGCGGGCTGAAGGCTGGCCGCAAGCGCATCACGT
GCGTCGAGTCGGACGACGCCCTGCTGGCGCTGCGCCTCGCCAACTTCACC
GCGTGAGTCCGTTCGCTTGACCGTTCCTTCAGATGTTTTCTGACCCCGGC
ATGAAGAGCAAAGCTGAGAGGGAGAGCTCATGGTTTGTCATTGCCCGCTC
GGTGCATTGTCTTATTTCCGCAGGGTTCTGCTCGTTCTTCCCCTTCGTCC
AGATTGGCGGAGCTTCTGCGCTAACCGAGCTTTCCTCCGCCCTCCTTCCC
TGTCGGTTTGAACGGGACGCCATTGTGTGCCACCCACCTGGCTGCCACCG
GCCGCTTTGTTGCTTGTTCGCAGTTACGCCAAGCCGGGCGGGTCGGAACA
GCTGGTCAACGACCCCACCACGCCGGCGGTGCGCGCGGCGTGGCGGCAGG
AAGGCGTCCGCTTCGGAACCTTCGAGATCACCGCCGGCGACGGCTACGTT
GTGCCCTCCTCCGTGCCTCACGAGTTTATCAACGTCGAGGTCAGTCAGTC
GGTGAGAGAGCGGGAGGGGAAAACCGGAGGTGTGATGCCTTTCCACTGTT
TGGTTCAATGCCTCTGTCTCTCATGACGGAGGACGATGACGGCGTATTAT
CATCCACGGCATTGAAGGACTGGATCGTCCGCAAGTTTACACTGTTCTGT
ACCTGCCAGTGGATGGAGGTGGCCGACACCTTAACCGCGGTTCAAGCTTT
CTCGTGTGTATGTTGCGCTGCAGTCTGCAGCTGGCGTGGCCGGCAGGTCG
TGCCACCGCCTATGTCGATTATTCGTCGGTTTACTCCAGTGTTCCACCCA
TTTGCGCTTGGCCCAGGAATGCCTTTCGGTGGCCTGGAACTTCCTGCCGC
CGCCCTGCGCCTGCGGGCTGGCGCTGGCCGTGTCGGGCGCCGCGCGGAAG
GAGGCT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6771:2052..3057+

>mRNA_P-wetherbeei_contig6771.1.1 ID=mRNA_P-wetherbeei_contig6771.1.1|Name=mRNA_P-wetherbeei_contig6771.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=378bp|location=Sequence derived from alignment at P-wetherbeei_contig6771:2052..3057+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCACATGGACGGCAACGGCAGCTTCTGCGCGGCCGGCGGGCTGAAGGC
TGGCCGCAAGCGCATCACGTGCGTCGAGTCGGACGACGCCCTGCTGGCGC
TGCGCCTCGCCAACTTCACCGCTTACGCCAAGCCGGGCGGGTCGGAACAG
CTGGTCAACGACCCCACCACGCCGGCGGTGCGCGCGGCGTGGCGGCAGGA
AGGCGTCCGCTTCGGAACCTTCGAGATCACCGCCGGCGACGGCTACGTTG
TGCCCTCCTCCGTGCCTCACGAGTTTATCAACGTCGAGGAATGCCTTTCG
GTGGCCTGGAACTTCCTGCCGCCGCCCTGCGCCTGCGGGCTGGCGCTGGC
CGTGTCGGGCGCCGCGCGGAAGGAGGCT
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