mRNA_P-wetherbeei_contig677.5.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig677.5.1
Unique NamemRNA_P-wetherbeei_contig677.5.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig677.5.1 vs. uniprot
Match: A0A7S2FW86_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FW86_9STRA)

HSP 1 Score: 93.2 bits (230), Expect = 5.470e-18
Identity = 47/111 (42.34%), Postives = 65/111 (58.56%), Query Frame = 2 
Query:  221 SNCITVGGGSTGAKYQSCTGCLYATGQACLADMRANVSRNVPDGCDMSALTVQSDRSCCPVLDTSNSKKITMDSTTTAYPDALLCLQQAGCESSALYQSLYYECVFQGCVV 553
            SNCI VGGG     Y+ C GC+    Q C++DMR+N+S+NVP GCD++ +  +    CC   + +N    +++  + AY DALLCL   GC  SA Y  +  EC F GC V
Sbjct:   43 SNCIQVGGGEV-PYYEYCEGCMVVKAQRCISDMRSNISKNVPYGCDLNTVVQKRQPQCCSTFEDNNHFH-SLEGLSAAYNDALLCLANIGCHDSAFYHQIEDECHFNGCDV 151
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BLAST of mRNA_P-wetherbeei_contig677.5.1 vs. uniprot
Match: F0Y778_AURAN (Aldo_ket_red domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y778_AURAN)

HSP 1 Score: 58.2 bits (139), Expect = 5.060e-6
Identity = 40/105 (38.10%), Postives = 53/105 (50.48%), Query Frame = 2 
Query:  221 SNCITVGGGSTGAKYQSCTGCLYATGQACLADMRANVSRNVPDGCDMSALTVQS----------DRSCCPVLDTSNSKKITMDSTTT-AYPDALLCLQQAGCESS 502
            S C+  GGG     + SC GC       C++DMRANVS NVP GC+M ++   +          +R CCP L       + +D+  T AY DAL CL    CE+S
Sbjct:  277 STCLLTGGGVV-PYFNSCVGCSLTAAHQCVSDMRANVSFNVPVGCNMDSVGSLAGYRPNIKKIENRRCCPRL-------VNIDNEFTWAYRDALRCLTNIYCETS 373
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig677.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A7S2FW86_9STRA5.470e-1842.34Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
F0Y778_AURAN5.060e-638.10Aldo_ket_red domain-containing protein n=1 Tax=Aur... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig677contigP-wetherbeei_contig677:7380..8290 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size782
Hectar predicted targeting categorysignal peptide
Exons2
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-18_000820.1
Cds size513
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186936.3602893-UTR-P-wetherbeei_contig677:7379..75031683186936.3602893-UTR-P-wetherbeei_contig677:7379..7503Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig677 7380..7503 -
1683186936.406931-UTR-P-wetherbeei_contig677:8145..82901683186936.406931-UTR-P-wetherbeei_contig677:8145..8290Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig677 8146..8290 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186936.3781922-CDS-P-wetherbeei_contig677:7503..79521683186936.3781922-CDS-P-wetherbeei_contig677:7503..7952Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig677 7504..7952 -
1683186936.3971996-CDS-P-wetherbeei_contig677:8081..81451683186936.3971996-CDS-P-wetherbeei_contig677:8081..8145Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig677 8082..8145 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig677.5.1prot_P-wetherbeei_contig677.5.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig677 7504..8145 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig677.5.1

>prot_P-wetherbeei_contig677.5.1 ID=prot_P-wetherbeei_contig677.5.1|Name=mRNA_P-wetherbeei_contig677.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=171bp
MKGSFAFAAFVLGCNSTANAYEYIPSNCITVGGGSTGAKYQSCTGCLYAT
GQACLADMRANVSRNVPDGCDMSALTVQSDRSCCPVLDTSNSKKITMDST
TTAYPDALLCLQQAGCESSALYQSLYYECVFQGCVVTYACVPTVSAAPAA
APALFFLALLVQVAVCLHLG*
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mRNA from alignment at P-wetherbeei_contig677:7380..8290-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig677.5.1 ID=mRNA_P-wetherbeei_contig677.5.1|Name=mRNA_P-wetherbeei_contig677.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=911bp|location=Sequence derived from alignment at P-wetherbeei_contig677:7380..8290- (Phaeothamnion wetherbeei SAG_119_79)
CCCGCACTTCAGCTTCACTTTTTCACGAAGGCATCATCTTATTGGTGCCT
GGACACTTGTCTTTTCATTAGAGTTTGGTGCCTGGACACTTGTTTTTTTA
TTAGAGGGCGTTTGCTTCTCGTCCTAGGATTCGCAGCCCGCATGGATGAA
GGGCAGCTTCGCCTTCGCCGCGTTCGTTCTCGGCTGCAACTCGACGGCGA
ATGCATACGGTGTGTGTTCCCACACCCTCGCTCGACTTTACATACCCGAG
GGTTCAAAAGATTTTGCCTTTTTAATCCAAAGATCGAAAAACGGGCTCTC
CTTCTTATCCTTTCCACCCTTCCCTCACATCCGTCCAGAATACATCCCGA
GCAACTGCATCACGGTCGGCGGCGGCTCGACGGGGGCCAAGTACCAGTCC
TGCACGGGCTGCTTATATGCGACGGGCCAGGCGTGTCTCGCCGACATGCG
CGCCAACGTCAGCCGCAACGTGCCCGACGGATGCGATATGTCCGCGCTGA
CAGTGCAATCCGACCGCTCCTGCTGCCCGGTCCTGGACACGTCCAACAGC
AAGAAGATCACTATGGACTCGACGACGACGGCCTACCCGGATGCGCTGCT
ATGCCTCCAGCAGGCTGGTTGCGAGAGCAGCGCCCTCTATCAGAGCCTCT
ACTACGAGTGCGTGTTTCAGGGCTGCGTCGTCACGTACGCGTGCGTGCCG
ACGGTCAGCGCCGCTCCGGCAGCGGCACCGGCACTGTTTTTTCTTGCATT
GCTCGTGCAAGTGGCGGTCTGCTTGCATCTGGGTTGAGGCAGGAACGCAG
AAGCTGATTAAATGGAAGGATGTCTTGTCCCGCTGGGATTCGCTTTCAGT
GGAGCCATCTGCTGCTGGAGACCTTCCCTTAGGGGAATCAATCACGAGCG
AAAATCGAAGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig677:7380..8290-

>mRNA_P-wetherbeei_contig677.5.1 ID=mRNA_P-wetherbeei_contig677.5.1|Name=mRNA_P-wetherbeei_contig677.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=513bp|location=Sequence derived from alignment at P-wetherbeei_contig677:7380..8290- (Phaeothamnion wetherbeei SAG_119_79)
ATGAAGGGCAGCTTCGCCTTCGCCGCGTTCGTTCTCGGCTGCAACTCGAC
GGCGAATGCATACGAATACATCCCGAGCAACTGCATCACGGTCGGCGGCG
GCTCGACGGGGGCCAAGTACCAGTCCTGCACGGGCTGCTTATATGCGACG
GGCCAGGCGTGTCTCGCCGACATGCGCGCCAACGTCAGCCGCAACGTGCC
CGACGGATGCGATATGTCCGCGCTGACAGTGCAATCCGACCGCTCCTGCT
GCCCGGTCCTGGACACGTCCAACAGCAAGAAGATCACTATGGACTCGACG
ACGACGGCCTACCCGGATGCGCTGCTATGCCTCCAGCAGGCTGGTTGCGA
GAGCAGCGCCCTCTATCAGAGCCTCTACTACGAGTGCGTGTTTCAGGGCT
GCGTCGTCACGTACGCGTGCGTGCCGACGGTCAGCGCCGCTCCGGCAGCG
GCACCGGCACTGTTTTTTCTTGCATTGCTCGTGCAAGTGGCGGTCTGCTT
GCATCTGGGTTGA
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