mRNA_P-wetherbeei_contig677.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig677.3.1
Unique NamemRNA_P-wetherbeei_contig677.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig677.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig677contigP-wetherbeei_contig677:1908..2593 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size407
Hectar predicted targeting categoryother localisation
Exons2
Cds size405
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186936.1074347-CDS-P-wetherbeei_contig677:1907..20341683186936.1074347-CDS-P-wetherbeei_contig677:1907..2034Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig677 1908..2034 +
1683186936.1268613-CDS-P-wetherbeei_contig677:2315..25931683186936.1268613-CDS-P-wetherbeei_contig677:2315..2593Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig677 2316..2593 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig677.3.1prot_P-wetherbeei_contig677.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig677 1908..2593 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig677.3.1

>prot_P-wetherbeei_contig677.3.1 ID=prot_P-wetherbeei_contig677.3.1|Name=mRNA_P-wetherbeei_contig677.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=135bp
LPSPFNHERGVGAAVLSSAGRCSSWGRACSYDAFLSWVDASEEQGRGVVG
GGVVLRHAGVRQAVGSQLPAAAVCFGHGRLVNLFISSPAPTMNQAGVGSR
RLMTISLRRKRERRFTGWYLRNFVNNDYTKGQCSV
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mRNA from alignment at P-wetherbeei_contig677:1908..2593+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig677.3.1 ID=mRNA_P-wetherbeei_contig677.3.1|Name=mRNA_P-wetherbeei_contig677.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=686bp|location=Sequence derived from alignment at P-wetherbeei_contig677:1908..2593+ (Phaeothamnion wetherbeei SAG_119_79)
CTCCCTTCCCCGTTCAACCATGAACGCGGCGTTGGTGCAGCCGTTCTATC
GTCCGCCGGGAGATGCTCAAGCTGGGGCCGGGCCTGTTCTTACGATGCTT
TTCTCAGTTGGGTCGATGCTTCTGAAGGTGAGCTTTGACCGTATCAACCA
TTTTTTGCCATAGCAAACAACATGCGCTCCTTGAAGACCGGAAATTGACT
TCCAGCGCTTTCGAACGTGCTTTTCAGGAAGGGATTTTAGCGCACGTTGT
ATAGCGACTCGAGGAAGGTAACTGATCTTCCTTTAGTCTTCCGCGTGAAA
ATGAGGAAACGTTGCGCTGCTCTGCTTTCCTCGCACAGCCCGTCTGAGGC
TGATCCAAGAACCCGCCTTCCCGTTGTGTTTGCTTTTCTCTCTCGTCTCA
ACTCTCAGAGCAAGGTCGCGGCGTGGTTGGGGGCGGTGTCGTGCTGCGCC
ATGCTGGCGTGCGTCAAGCGGTCGGAAGTCAACTACCAGCAGCTGCTGTT
TGCTTTGGTCACGGCAGGCTCGTCAATCTATTCATCTCTAGTCCTGCCCC
CACAATGAATCAGGCGGGCGTCGGCAGCCGAAGATTGATGACTATTTCCT
TGCGACGGAAAAGAGAGAGGCGATTTACGGGCTGGTACCTCCGCAATTTT
GTCAATAATGATTATACGAAAGGCCAATGCAGCGTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig677:1908..2593+

>mRNA_P-wetherbeei_contig677.3.1 ID=mRNA_P-wetherbeei_contig677.3.1|Name=mRNA_P-wetherbeei_contig677.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=405bp|location=Sequence derived from alignment at P-wetherbeei_contig677:1908..2593+ (Phaeothamnion wetherbeei SAG_119_79)
CTCCCTTCCCCGTTCAACCATGAACGCGGCGTTGGTGCAGCCGTTCTATC
GTCCGCCGGGAGATGCTCAAGCTGGGGCCGGGCCTGTTCTTACGATGCTT
TTCTCAGTTGGGTCGATGCTTCTGAAGAGCAAGGTCGCGGCGTGGTTGGG
GGCGGTGTCGTGCTGCGCCATGCTGGCGTGCGTCAAGCGGTCGGAAGTCA
ACTACCAGCAGCTGCTGTTTGCTTTGGTCACGGCAGGCTCGTCAATCTAT
TCATCTCTAGTCCTGCCCCCACAATGAATCAGGCGGGCGTCGGCAGCCGA
AGATTGATGACTATTTCCTTGCGACGGAAAAGAGAGAGGCGATTTACGGG
CTGGTACCTCCGCAATTTTGTCAATAATGATTATACGAAAGGCCAATGCA
GCGTG
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