mRNA_P-wetherbeei_contig6763.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6763.1.1
Unique NamemRNA_P-wetherbeei_contig6763.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6763.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6763contigP-wetherbeei_contig6763:713..2681 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size1937
Hectar predicted targeting categoryother localisation
Exons2
Cds size1935
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186935.725144-CDS-P-wetherbeei_contig6763:712..23431683186935.725144-CDS-P-wetherbeei_contig6763:712..2343Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6763 713..2343 +
1683186935.7349484-CDS-P-wetherbeei_contig6763:2377..26811683186935.7349484-CDS-P-wetherbeei_contig6763:2377..2681Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6763 2378..2681 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6763.1.1prot_P-wetherbeei_contig6763.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6763 713..2681 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6763.1.1

>prot_P-wetherbeei_contig6763.1.1 ID=prot_P-wetherbeei_contig6763.1.1|Name=mRNA_P-wetherbeei_contig6763.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=645bp
AGAAAAGAGSGVAASAGAAAPPSAAGAAAGRTAMAAAADGAASAAPRDDQ
AAGSSGGAFRRSGPGGGGAAAGRGMQPMRVPPPVQAPSSSGGSAPAVPSG
PSVMAVGETGVESPHPGAARPVPGAAPSAALAAAAAADGSSRGPGGHYDL
VSRPYSSLFARPAAARAPATAACAGPAAEGAPPPGREDHHDSYRGYGSGS
GGGGGGVASDGAMSVPPDNYDRGHVRPERKLFDYKTGRMVEPPPLLPLAP
PSGPPPPPPRPGQAEHGECAVPRKPPLPPPSRQEHQQQEQPPGRRSDYEP
RCGGRGRGARSGGGGSSGSRGGNDGQLMDWRRQCPPGAIAGLRDAPASGG
GGGEGRRSEPEGGRSPDNRWKKKEPIPLSDASAIEILVVGPAGDATAAAP
ATGAPQERSESQPRPKADAATATGNEAAPATDRGANRAVAADAKAAPEAS
AALASDGFTASAAAESAAAMSTAAPPAQPLPQWRVPVGGRAQQQPSSRQQ
EMQLPSPRPPEGTASAWRPQQLSQPRQPPLSQEQQQEQHHHHHHSSSGSS
SSSGSRRWRSDAARSNGSIMRWWSAGGRSSSSSCSTSGRSARHALAKRAR
KNAPPAGLAQRACYTATTNPAQSSTRTCRRESPIRWRRGGRGPVC
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mRNA from alignment at P-wetherbeei_contig6763:713..2681+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6763.1.1 ID=mRNA_P-wetherbeei_contig6763.1.1|Name=mRNA_P-wetherbeei_contig6763.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1969bp|location=Sequence derived from alignment at P-wetherbeei_contig6763:713..2681+ (Phaeothamnion wetherbeei SAG_119_79)
GCGGGAGCAGCGGCTGCAGGCGCCGGAAGCGGCGTCGCGGCCAGTGCGGG
AGCGGCGGCGCCGCCTTCTGCCGCTGGCGCCGCCGCAGGCCGGACTGCGA
TGGCAGCGGCTGCGGATGGTGCAGCGTCGGCGGCTCCTCGGGATGACCAG
GCGGCGGGATCGAGCGGCGGTGCTTTCCGGCGGAGCGGGCCCGGCGGCGG
CGGCGCTGCTGCGGGGCGCGGCATGCAGCCAATGCGTGTGCCGCCGCCGG
TGCAGGCGCCATCTTCGTCCGGCGGATCCGCGCCCGCTGTCCCCTCGGGA
CCCAGCGTCATGGCGGTCGGCGAAACGGGCGTCGAATCGCCACATCCCGG
CGCTGCCAGGCCGGTGCCCGGAGCGGCACCGTCGGCGGCACTTGCGGCGG
CGGCAGCGGCAGATGGGAGTTCCAGAGGCCCCGGCGGCCATTACGATTTA
GTGAGCCGGCCGTACTCTAGCTTGTTTGCGCGCCCTGCCGCGGCCAGGGC
ACCCGCCACGGCGGCTTGTGCTGGGCCGGCGGCAGAAGGTGCGCCGCCAC
CGGGCAGGGAGGACCATCACGACAGTTACCGTGGTTACGGCAGCGGCAGC
GGCGGCGGCGGCGGCGGCGTAGCTTCTGACGGTGCCATGTCGGTGCCGCC
AGACAATTACGACCGTGGTCACGTGAGGCCGGAGCGGAAGCTGTTTGATT
ACAAGACCGGGAGGATGGTGGAGCCTCCGCCGCTGCTGCCGCTGGCGCCA
CCGTCGGGACCACCGCCGCCGCCGCCTAGGCCCGGGCAGGCGGAGCATGG
CGAGTGCGCGGTACCGCGCAAGCCACCACTGCCGCCGCCGTCGCGACAGG
AGCACCAGCAACAGGAGCAGCCGCCGGGGCGCCGGTCAGATTACGAGCCG
CGGTGCGGGGGCCGGGGAAGGGGCGCCCGCAGCGGCGGCGGCGGTAGCAG
CGGCAGCCGCGGCGGCAATGATGGCCAGCTGATGGACTGGCGTAGGCAAT
GCCCTCCGGGGGCCATCGCTGGCCTCAGAGATGCCCCGGCGTCCGGCGGT
GGCGGCGGCGAAGGCAGGCGGAGCGAACCCGAAGGCGGTCGCAGCCCGGA
CAACCGCTGGAAGAAGAAGGAGCCAATTCCGTTGTCGGACGCATCTGCGA
TTGAAATATTGGTAGTGGGCCCTGCCGGCGACGCTACCGCCGCGGCGCCG
GCTACCGGTGCGCCGCAGGAGCGGTCAGAGTCTCAACCGCGACCAAAAGC
AGACGCGGCAACCGCGACTGGGAATGAGGCTGCGCCGGCGACGGATCGTG
GCGCGAATAGAGCTGTTGCTGCTGATGCGAAAGCCGCTCCAGAGGCGTCG
GCAGCTTTGGCGTCAGATGGATTCACAGCGAGTGCAGCTGCAGAATCGGC
GGCGGCGATGAGCACGGCGGCGCCCCCAGCGCAGCCGCTGCCACAGTGGC
GGGTGCCAGTGGGAGGACGGGCGCAGCAGCAGCCGTCGTCACGTCAACAA
GAGATGCAGCTGCCGTCGCCGCGACCACCAGAAGGGACGGCGTCCGCCTG
GCGGCCGCAGCAGCTTTCGCAACCGCGGCAGCCGCCGCTGTCGCAAGAGC
AGCAGCAAGAGCAGCACCACCACCACCACCAGCAGCAGCAGCGGCAGCAG
CAGCAGCAACAGCAGCAGCAGCAGCGGCAGCAGCAGCAGCAGTGGCAGCA
GGCGGTGGCGGAGCGACGCCGCGAGGAGCAACGGCAGCATCATGCGGTGG
TGGAGCGCCGGCGGGAGGAGCAGCAGCAGCAGCTGCAGCACAAGCGGGAG
GAGCGCGCGGCACGCGCTCGCGAAGCGCGCGCGGAAGAACGCGCCACCCG
CGGGCCTCGCACAAAGGGCGTGTTATACCGCCACCACGAATCCGGCCCAG
TCGTCAACGCGGACGTGCCGGAGGGAGAGCCCGATCCGATGGCGGCGCGG
TGGGCGCGGGCCGGTCTGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6763:713..2681+

>mRNA_P-wetherbeei_contig6763.1.1 ID=mRNA_P-wetherbeei_contig6763.1.1|Name=mRNA_P-wetherbeei_contig6763.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1935bp|location=Sequence derived from alignment at P-wetherbeei_contig6763:713..2681+ (Phaeothamnion wetherbeei SAG_119_79)
GCGGGAGCAGCGGCTGCAGGCGCCGGAAGCGGCGTCGCGGCCAGTGCGGG
AGCGGCGGCGCCGCCTTCTGCCGCTGGCGCCGCCGCAGGCCGGACTGCGA
TGGCAGCGGCTGCGGATGGTGCAGCGTCGGCGGCTCCTCGGGATGACCAG
GCGGCGGGATCGAGCGGCGGTGCTTTCCGGCGGAGCGGGCCCGGCGGCGG
CGGCGCTGCTGCGGGGCGCGGCATGCAGCCAATGCGTGTGCCGCCGCCGG
TGCAGGCGCCATCTTCGTCCGGCGGATCCGCGCCCGCTGTCCCCTCGGGA
CCCAGCGTCATGGCGGTCGGCGAAACGGGCGTCGAATCGCCACATCCCGG
CGCTGCCAGGCCGGTGCCCGGAGCGGCACCGTCGGCGGCACTTGCGGCGG
CGGCAGCGGCAGATGGGAGTTCCAGAGGCCCCGGCGGCCATTACGATTTA
GTGAGCCGGCCGTACTCTAGCTTGTTTGCGCGCCCTGCCGCGGCCAGGGC
ACCCGCCACGGCGGCTTGTGCTGGGCCGGCGGCAGAAGGTGCGCCGCCAC
CGGGCAGGGAGGACCATCACGACAGTTACCGTGGTTACGGCAGCGGCAGC
GGCGGCGGCGGCGGCGGCGTAGCTTCTGACGGTGCCATGTCGGTGCCGCC
AGACAATTACGACCGTGGTCACGTGAGGCCGGAGCGGAAGCTGTTTGATT
ACAAGACCGGGAGGATGGTGGAGCCTCCGCCGCTGCTGCCGCTGGCGCCA
CCGTCGGGACCACCGCCGCCGCCGCCTAGGCCCGGGCAGGCGGAGCATGG
CGAGTGCGCGGTACCGCGCAAGCCACCACTGCCGCCGCCGTCGCGACAGG
AGCACCAGCAACAGGAGCAGCCGCCGGGGCGCCGGTCAGATTACGAGCCG
CGGTGCGGGGGCCGGGGAAGGGGCGCCCGCAGCGGCGGCGGCGGTAGCAG
CGGCAGCCGCGGCGGCAATGATGGCCAGCTGATGGACTGGCGTAGGCAAT
GCCCTCCGGGGGCCATCGCTGGCCTCAGAGATGCCCCGGCGTCCGGCGGT
GGCGGCGGCGAAGGCAGGCGGAGCGAACCCGAAGGCGGTCGCAGCCCGGA
CAACCGCTGGAAGAAGAAGGAGCCAATTCCGTTGTCGGACGCATCTGCGA
TTGAAATATTGGTAGTGGGCCCTGCCGGCGACGCTACCGCCGCGGCGCCG
GCTACCGGTGCGCCGCAGGAGCGGTCAGAGTCTCAACCGCGACCAAAAGC
AGACGCGGCAACCGCGACTGGGAATGAGGCTGCGCCGGCGACGGATCGTG
GCGCGAATAGAGCTGTTGCTGCTGATGCGAAAGCCGCTCCAGAGGCGTCG
GCAGCTTTGGCGTCAGATGGATTCACAGCGAGTGCAGCTGCAGAATCGGC
GGCGGCGATGAGCACGGCGGCGCCCCCAGCGCAGCCGCTGCCACAGTGGC
GGGTGCCAGTGGGAGGACGGGCGCAGCAGCAGCCGTCGTCACGTCAACAA
GAGATGCAGCTGCCGTCGCCGCGACCACCAGAAGGGACGGCGTCCGCCTG
GCGGCCGCAGCAGCTTTCGCAACCGCGGCAGCCGCCGCTGTCGCAAGAGC
AGCAGCAAGAGCAGCACCACCACCACCACCACAGCAGCAGCGGCAGCAGC
AGCAGCAGTGGCAGCAGGCGGTGGCGGAGCGACGCCGCGAGGAGCAACGG
CAGCATCATGCGGTGGTGGAGCGCCGGCGGGAGGAGCAGCAGCAGCAGCT
GCAGCACAAGCGGGAGGAGCGCGCGGCACGCGCTCGCGAAGCGCGCGCGG
AAGAACGCGCCACCCGCGGGCCTCGCACAAAGGGCGTGTTATACCGCCAC
CACGAATCCGGCCCAGTCGTCAACGCGGACGTGCCGGAGGGAGAGCCCGA
TCCGATGGCGGCGCGGTGGGCGCGGGCCGGTCTGC
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