mRNA_P-wetherbeei_contig6758.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6758.1.1
Unique NamemRNA_P-wetherbeei_contig6758.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig6758.1.1 vs. uniprot
Match: A0A835YPD7_9STRA (FAD-binding FR-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPD7_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 2.530e-13
Identity = 49/134 (36.57%), Postives = 77/134 (57.46%), Query Frame = 1 
Query:  166 HFHRGKLAVQHKAGVSADAAHALSAGWLGERISASGDVQMSNLETREVYITSIDEQGRVWTSPVSGANPGFLEHTVGTGNKPDTLTISAPADRGFLTFEGDPLLVNLAAVPLAPVGVLLMSHKFIRRYRVDGRV 567
            HF +G +AVQ +AG   +A+  L  GWL ++I  SG V + + + +E++++S+D +GRVW S + G  PGF+   + + +  D L+I    D   L++ GD  L  +   P + VG L M     +RYRV GRV
Sbjct:  474 HF-KGIVAVQQRAGTLEEASGILGNGWLSDQIKGSGLVMLDSKQ-QEIFVSSVDPEGRVWASALYGP-PGFIN--LRSYDTHDILSIQPTKDHSGLSWAGDGFLEGITK-PGSQVGCLFMDQGTAKRYRVSGRV 601
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BLAST of mRNA_P-wetherbeei_contig6758.1.1 vs. uniprot
Match: UPI001A9DC64B (pyridoxamine 5'-phosphate oxidase family protein n=1 Tax=Williamsia soli TaxID=364929 RepID=UPI001A9DC64B)

HSP 1 Score: 66.2 bits (160), Expect = 1.830e-9
Identity = 57/141 (40.43%), Postives = 74/141 (52.48%), Query Frame = 1 
Query:  154 PMPFHFHRGKLAVQHKAGVSADAAHALSAGWLGERISASGDVQMSNLETREVYITSIDEQGRVWTSPVSGANPGFLEHTVGTGNKPDTLTIS-APADRGFLTFEGDPLLVNLAAVPLAPVGVLLMSHKFIRRYRVDGRVTA 573
            P P  FH G+LAVQH+AGVS  AA     G L     + G  Q  +  T    IT+ D  GR+WT+ ++GA PGFL     T     TLTI  +PA        GDPL   LA  P  PVG+L++     RR R++G +T+
Sbjct:   10 PSPTGFHEGELAVQHRAGVSTQAAR--FEGMLDPGELSGGLAQFLSARTFAA-ITARDTDGRLWTTALTGA-PGFLAAATST-----TLTIDDSPA-------LGDPLH-RLA--PGQPVGLLVIDFATRRRVRINGTLTS 131
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BLAST of mRNA_P-wetherbeei_contig6758.1.1 vs. uniprot
Match: A0A261D6G2_9NOCA (Pyridoxamine 5'-phosphate oxidase n=2 Tax=unclassified Williamsia TaxID=2636252 RepID=A0A261D6G2_9NOCA)

HSP 1 Score: 63.9 bits (154), Expect = 1.150e-8
Identity = 58/145 (40.00%), Postives = 76/145 (52.41%), Query Frame = 1 
Query:  139 TNPNSPMPFHFHRGKLAVQHKAGVSADAAHALSAGWLGERISASGDVQMSNLETREVYITSIDEQGRVWTSPVSGANPGFLEHTVGTGNKPDTLTIS-APADRGFLTFEGDPLLVNLAAVPLAPVGVLLMSHKFIRRYRVDGRVT 570
            T  + P    FH G+LAVQ +AGVSA AA     G L     + G  Q  ++ T    IT+ D  G +WTSP++GA PGFL         P TLTI+ +PA        GDPL   LA  P  PVG+L++     RR R++G +T
Sbjct:    3 TLAHRPEAGGFHEGELAVQRRAGVSAQAARL--EGMLDPGELSGGLAQFLSVRTFAA-ITARDAAGILWTSPLAGA-PGFLAALT-----PTTLTIAGSPA-------PGDPLH-QLA--PDQPVGLLVIDFATRRRVRINGTLT 128
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BLAST of mRNA_P-wetherbeei_contig6758.1.1 vs. uniprot
Match: UPI001E4208EE (pyridoxamine 5'-phosphate oxidase family protein n=1 Tax=Saccharothrix sp. NEAU-S10 TaxID=2893018 RepID=UPI001E4208EE)

HSP 1 Score: 56.6 bits (135), Expect = 4.080e-6
Identity = 50/132 (37.88%), Postives = 66/132 (50.00%), Query Frame = 1 
Query:  169 FHRGKLAVQHKAGVSADAAHALSAGWLGERISASGDVQMSNLETREVYITSIDEQGRVWTSPVSGANPGFLEHTVGTGNKPDTLTISAPADRGFLTFEGDPLLVNLAAVPL-APVGVLLMSHKFIRRYRVDG 561
            FH G+LAVQ +AGVSADAA  L+      R+  SG  +    E     IT+ D  G +W SP++G  PGFL H     + P TL +           EGDPL      +P   P GV+++     RR RV+G
Sbjct:    7 FHEGELAVQRRAGVSADAAR-LAGMVAPSRL--SGGAERFLAERTFAAITARDTGGSLWLSPLTGP-PGFL-HV----DAPTTLAVRTSPG------EGDPL----RGLPADQPAGVIVVEFATRRRLRVNG 119
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BLAST of mRNA_P-wetherbeei_contig6758.1.1 vs. uniprot
Match: A0A2R6I1B7_9EURY (Pyridoxamine 5-phosphate oxidase (Fragment) n=1 Tax=Halobacteriales archaeon QS_5_70_17 TaxID=1919181 RepID=A0A2R6I1B7_9EURY)

HSP 1 Score: 53.9 bits (128), Expect = 2.640e-5
Identity = 44/131 (33.59%), Postives = 64/131 (48.85%), Query Frame = 1 
Query:  169 FHRGKLAVQHKAGVSADAAHALSAGWLGERISASGDVQMSNLETREVYITSIDEQGRVWTSPVSGANPGFLEHTVGTGNKPDTLTISAPADRGFLTFEGDPLLVNLAAVPLAPVGVLLMSHKFIRRYRVDG 561
            +H G++AVQ +AG    A     AG +   I AS DV+    +     + S+D +G VWTS ++G  PGF+ H        D  T+   AD      +GDPL  +L      P GVLL+  +   R R++G
Sbjct:    6 YHEGEIAVQRRAGARERADK--MAGMVEGSIPASEDVRALVDDQPHAVVASVDREGNVWTSFLTG-RPGFI-HVA------DDRTVRFEAD----PVDGDPLADHLREG--VPAGVLLVDPRDRNRLRLNG 120
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6758.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A835YPD7_9STRA2.530e-1336.57FAD-binding FR-type domain-containing protein n=1 ... [more]
UPI001A9DC64B1.830e-940.43pyridoxamine 5'-phosphate oxidase family protein n... [more]
A0A261D6G2_9NOCA1.150e-840.00Pyridoxamine 5'-phosphate oxidase n=2 Tax=unclassi... [more]
UPI001E4208EE4.080e-637.88pyridoxamine 5'-phosphate oxidase family protein n... [more]
A0A2R6I1B7_9EURY2.640e-533.59Pyridoxamine 5-phosphate oxidase (Fragment) n=1 Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6758contigP-wetherbeei_contig6758:233..1112 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1172180.KB911780_gene7039
PFAMsPutative_PNPOx
Model size598
Max annot lvl201174|Actinobacteria
KEGG koko:K07006
Hectar predicted targeting categoryother localisation
Exons3
Evalue2.95e-08
EggNOG OGsCOG3576@1|root,COG3576@2|Bacteria,2GP9M@201174|Actinobacteria
Descriptionpyridoxamine 5-phosphate
Cds size441
COG categoryC
BRITEko00000
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186935.1644511-UTR-P-wetherbeei_contig6758:232..3881683186935.1644511-UTR-P-wetherbeei_contig6758:232..388Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6758 233..388 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186935.177084-CDS-P-wetherbeei_contig6758:388..5141683186935.177084-CDS-P-wetherbeei_contig6758:388..514Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6758 389..514 +
1683186935.185374-CDS-P-wetherbeei_contig6758:646..7711683186935.185374-CDS-P-wetherbeei_contig6758:646..771Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6758 647..771 +
1683186935.1935902-CDS-P-wetherbeei_contig6758:922..11121683186935.1935902-CDS-P-wetherbeei_contig6758:922..1112Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6758 923..1112 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6758.1.1prot_P-wetherbeei_contig6758.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6758 389..1112 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6758.1.1

>prot_P-wetherbeei_contig6758.1.1 ID=prot_P-wetherbeei_contig6758.1.1|Name=mRNA_P-wetherbeei_contig6758.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=147bp
MPFHFHRGKLAVQHKAGVSADAAHALSAGWLGERISASGDVQMSNLETRE
VYITSIDEQGRVWTSPVSGANPGFLEHTVGTGNKPDTLTISAPADRGFLT
FEGDPLLVNLAAVPLAPVGVLLMSHKFIRRYRVDGRVTALRRRHQTS
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mRNA from alignment at P-wetherbeei_contig6758:233..1112+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6758.1.1 ID=mRNA_P-wetherbeei_contig6758.1.1|Name=mRNA_P-wetherbeei_contig6758.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=880bp|location=Sequence derived from alignment at P-wetherbeei_contig6758:233..1112+ (Phaeothamnion wetherbeei SAG_119_79)
GGGCGAGCTCGGGAACGCAAGCCGGTGGCACTTCAGGGTTCCCGAGCCGA
TCGGCCCGAGCTTCCGAGCCGAGACGAAGCACGAAGAAAAATCGCAGGCT
GACTAATTCGAAACCCATTCTAGGCCTAGAGGAGGGAAACAAACCCTAAT
TCACCTATGCCTTTCCACTTCCATCGTGGCAAGCTCGCCGTCCAGCACAA
GGCCGGCGTGTCCGCAGATGCAGCTCACGCCCTCTCGGCGGGCTGGCTCG
GAGAAAGGATTTCTGCAAGCGGCGACGTTCAGGTACGTTGCTTCGATGGC
ACCCTCCTTCCTCCCATCCTTTCTCCATTCAAAGATCACGATTTTTTATA
TTTCACTTTCTCGCTATCGTTGTCTCCTCTCTTCGCTACTTCCCACTTGC
GCCCTGCTGAACAGATGTCCAACCTTGAAACGCGCGAAGTCTACATCACT
TCGATCGATGAGCAAGGCCGCGTCTGGACGAGTCCCGTCTCGGGTGCGAA
CCCCGGTTTCCTCGAGCACACCGTGGGCACCGGCAACAAGTAAGTTATCC
TTACTGGTTGCCCGCACTCAATTTTGCGCTATCCCGGCCTGTGCGTGTTC
CCTTTCTTTCGGTTTCTTCCTCCGCTTCAGCACTGAATGACGTACTAAAA
GTTCATTCGTTTTCCTCTCTGGTTTCTTCTCTTCTCGCAGGCCCGACACC
TTAACCATCTCGGCTCCCGCCGACCGCGGCTTCCTGACCTTCGAGGGCGA
CCCGCTGCTGGTTAACCTCGCCGCCGTGCCGCTGGCTCCCGTCGGCGTCC
TCCTTATGAGCCACAAGTTCATCCGCCGCTACCGCGTTGACGGCCGTGTC
ACGGCTCTCCGCCGCCGCCACCAGACAAGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6758:233..1112+

>mRNA_P-wetherbeei_contig6758.1.1 ID=mRNA_P-wetherbeei_contig6758.1.1|Name=mRNA_P-wetherbeei_contig6758.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=441bp|location=Sequence derived from alignment at P-wetherbeei_contig6758:233..1112+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCCTTTCCACTTCCATCGTGGCAAGCTCGCCGTCCAGCACAAGGCCGG
CGTGTCCGCAGATGCAGCTCACGCCCTCTCGGCGGGCTGGCTCGGAGAAA
GGATTTCTGCAAGCGGCGACGTTCAGATGTCCAACCTTGAAACGCGCGAA
GTCTACATCACTTCGATCGATGAGCAAGGCCGCGTCTGGACGAGTCCCGT
CTCGGGTGCGAACCCCGGTTTCCTCGAGCACACCGTGGGCACCGGCAACA
AGCCCGACACCTTAACCATCTCGGCTCCCGCCGACCGCGGCTTCCTGACC
TTCGAGGGCGACCCGCTGCTGGTTAACCTCGCCGCCGTGCCGCTGGCTCC
CGTCGGCGTCCTCCTTATGAGCCACAAGTTCATCCGCCGCTACCGCGTTG
ACGGCCGTGTCACGGCTCTCCGCCGCCGCCACCAGACAAGC
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