mRNA_P-wetherbeei_contig6744.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6744.1.1
Unique NamemRNA_P-wetherbeei_contig6744.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig6744.1.1 vs. uniprot
Match: A0A7S2QVS3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Triparma pacifica TaxID=91992 RepID=A0A7S2QVS3_9STRA)

HSP 1 Score: 138 bits (348), Expect = 2.670e-34
Identity = 75/205 (36.59%), Postives = 129/205 (62.93%), Query Frame = 1
Query:    1 IYCSCTHLTDFGSQFGETAGLASTVLSQ--KITLGDIMNSMTVLITLLVIYGAFIFGCIWGRYLDRKERLADMRANVTGV--GLDGLPLQPDK---KEVLLQLSTGLIAARRYWEGLKQNHRLLSVYF-LQDRVFTRPQRLMVLLCVLMGQLFTNAILYMQVGSAKDASVGERLQNMVFFAVMAVICGSPIGIILVLLFKRTGRQ 591
            I C CTHLT+F S+      +A++V+S    +T+ DI+N++ VL+TL+V+Y  FI GCI+GRYLD+K+ + D   + + +   +D   +  D    ++V  ++ + L  AR +W  +K+NH+++SV F  +D+V+TRPQRL VLL ++M Q+F NA LY+  G  +  +  + L + + F + A +  +P  I++ +L+K+ GR 
Sbjct: 3640 IVCECTHLTEFASRLEAIGSMANSVISLAGSLTVEDILNNLVVLVTLVVLYSTFILGCIYGRYLDKKDAMKDSLLSDSDILRDIDANSMFDDSIMIRDVRERVGS-LQMARDWWADMKENHKVVSVIFGSKDKVYTRPQRLTVLLLMIMSQMFANAFLYIVKGVKEGQTFEQELTDKLIFGIGAALFSTPPAIVIGILYKKAGRM 3843          
BLAST of mRNA_P-wetherbeei_contig6744.1.1 vs. uniprot
Match: A0A7S4DB10_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DB10_HETAK)

HSP 1 Score: 135 bits (340), Expect = 3.070e-33
Identity = 76/201 (37.81%), Postives = 115/201 (57.21%), Query Frame = 1
Query:    1 IYCSCTHLTDFGSQFGETAGLASTVLSQKITLGDIMNSMTVLITLLVIYGAFIFGCIWGRYLDRKERLADMRANVTGVGLDGLPLQPDKKEVLLQLS---TGLIAARRYW-EGLKQNHRLLSVYFLQDRVFTRPQRLMVLLCVLMGQLFTNAILYMQVGSAKDASVGERLQNMVFFAVMAVICGSPIGIILVLLFKRTGRQ 591
            I C CTHLTDF S   +T   A+ V +  ++L DI+ + T++ITLLV+ GAF+   +WGRY D K++   +  +V G+          +  V  + +    GL+   R+W  G+K++H++LS  F     FTRPQR +VLLC+LMG +  NA+LY       +AS+ +     V FAV++ I   P  II+ LLFK+ G+ 
Sbjct:  913 ITCKCTHLTDFSSTLDQTFYTAAAVANSALSLSDILANATIVITLLVVLGAFVVAMVWGRYKDLKDQRQILIEDVEGMDXXXXXXXXXQGTVDAEYAGKARGLVTTLRFWWSGMKKDHKVLSAVFSTSPTFTRPQRFVVLLCLLMGNIGCNALLYFFKALDANASLWDIFLQKVVFAVLSAILSMPGPIIIGLLFKKAGKS 1113          
BLAST of mRNA_P-wetherbeei_contig6744.1.1 vs. uniprot
Match: A0A835ZAG4_9STRA (GPS domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAG4_9STRA)

HSP 1 Score: 100 bits (250), Expect = 1.900e-23
Identity = 45/82 (54.88%), Postives = 63/82 (76.83%), Query Frame = 1
Query:    1 IYCSCTHLTDFGSQFGETAGLASTVLSQKITLGDIMNSMTVLITLLVIYGAFIFGCIWGRYLDRKERLADMRANVTGVGLDG 246
            I C+C+HLTDFGS+  +T+G+A TVL QKITL D+++++ V+ITLLV+Y  FI  CIWGRYLD+++R A++R  V     DG
Sbjct:   85 ITCACSHLTDFGSRLTQTSGMALTVLGQKITLQDLLDNLAVVITLLVVYAIFILACIWGRYLDKRDRRAEIRVGVAEDEADG 166          
BLAST of mRNA_P-wetherbeei_contig6744.1.1 vs. uniprot
Match: A0A7S2FS85_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FS85_9STRA)

HSP 1 Score: 102 bits (253), Expect = 4.180e-22
Identity = 68/215 (31.63%), Postives = 112/215 (52.09%), Query Frame = 1
Query:    1 IYCSCTHLTDFGSQF-GETAGLASTVLSQ-KITLGDIMNSMTVLITLLVIYGAFIFGCIWGRYLDRKERLA------DMRANVTGVGLDGLPLQPDKKEVLLQLSTGLIAARRYWEGLKQNHRLLSVYFLQDRVFTRPQRLMVLLCVLMGQLFTNAILY-----MQVGSAKDAS-------VGERLQNMVFFAVMAVICGSPIGIILVLLFKRTG 585
            I C+C H TDFGS   G  AG  +T+ +   I+L D++  + V++ +  I   F+  CI+GRYLD K++ A      D+  N+          +  + + L +L + ++  + +W GLK  H+++SV+ +QD  +TRPQRL+VLL      L  N+++Y      Q+G  KD         + + L   V   V++ I  S I +I  LL+ R+G
Sbjct:  115 IVCACDHATDFGSVVEGIAAGADATISNAGTISLMDLLKILLVILVVFTIDALFVGLCIYGRYLDEKDKAAITVLPKDLEGNLKPGNSLEQEFKAFEAKSLPKLPSLILILKGWWSGLKDKHKVVSVFHIQDTNYTRPQRLLVLLTFFSANLAANSLVYPVMPGQQIGVVKDVCNEAESIPLEQTLAIQVVCGVLSAIFNSVIHVIFTLLYSRSG 329          
BLAST of mRNA_P-wetherbeei_contig6744.1.1 vs. uniprot
Match: A0A1V9Z3X1_9STRA (Transmembrane protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z3X1_9STRA)

HSP 1 Score: 93.2 bits (230), Expect = 1.690e-18
Identity = 61/216 (28.24%), Postives = 108/216 (50.00%), Query Frame = 1
Query:    1 IYCSCTHLTDFGSQ----FGETAGLASTVLSQKITLGDIMNSMTVLITL---LVIYGAFIFGCIWGRYLDRKERLADMRANVTGV---------GLDGLP---LQPDKKEVLLQLSTGLIAARRYWEGLKQNHRLLSVYFLQDRVFTRPQRLMVLLCVLMGQLFTNAILYMQVGSAKDASVGERLQNMVFFAVMAVICGSPIGIILVLLFKRTGRQ 591
            + C C HLTDF SQ    +   A     V+    TL D+  ++ V+I +   +V+YG  +  C+    LD+++RL  ++    GV          L  LP       ++E L+ + +G      +WEGLK+ H +LS+    +  FTRPQR M++  V+M Q+F NA+LY      +   +   +  ++   +++ +C  P+ +  V+LF++ G+ 
Sbjct: 3833 VLCECNHLTDFSSQVNLAYKAVADNFIAVIDHHTTLEDVKENLNVVIIMAAFIVLYGISLVVCL---RLDKRDRLRHLQRQKAGVQEKERIKLRDLFELPRVVAAKTRREKLVAVLSG------FWEGLKEEHNILSMILKYNATFTRPQRCMIIFTVIMSQMFINALLY------RLRQMTPNIGTILVSGIVSSVCMMPVTLAFVILFRKAGKM 4033          
BLAST of mRNA_P-wetherbeei_contig6744.1.1 vs. uniprot
Match: T0RIM1_SAPDV (GPS domain-containing protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0RIM1_SAPDV)

HSP 1 Score: 79.0 bits (193), Expect = 1.410e-13
Identity = 65/208 (31.25%), Postives = 94/208 (45.19%), Query Frame = 1
Query:    1 IYCSCTHLTDFGSQFGETAGLAST----VLSQKITLGDIMNSMTVLITLLVIYGAFIFGCIWGRYLDRKERLA------DMRANVTGVGLDGLPLQPDKKEVLLQLSTGLIA-ARRYWEGLKQNHRLLSVYFLQDRVFTRPQRLMVLLCVLMGQLFTNAILYMQVGSAKDASVGERLQNMVFFAVMAVICGSPIGIILVLLFKRTGRQ 591
            I C+CTHLTDFG+Q  E            LS +IT   I  +  V ITL V  G ++         D  + L         R +   + +     +P +  V       L A  +  W GLK NH++L ++F  D  +TRPQR+MVL    M +L  NAILY      K  ++       V    ++ IC  P+ I  +LLFK++G +
Sbjct: 2328 ITCNCTHLTDFGTQIVEAFDAVQLQVVETLSVRITPELIEANAAVPITLGVFCGLYLLSLHLSLQWDAHDALVFAKEQRRRRDDAQHLYVPPKLYEPPEFVVAPTRRARLRAFCKSVWAGLKDNHKVLEMFFHYDPHYTRPQRVMVLFTAAMSELLMNAILY------KLRALTPNAGTTVVSGTVSSICMLPVTIAFILLFKKSGAR 2529          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6744.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A7S2QVS3_9STRA2.670e-3436.59Hypothetical protein (Fragment) n=1 Tax=Triparma p... [more]
A0A7S4DB10_HETAK3.070e-3337.81Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A835ZAG4_9STRA1.900e-2354.88GPS domain-containing protein (Fragment) n=1 Tax=T... [more]
A0A7S2FS85_9STRA4.180e-2231.63Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
A0A1V9Z3X1_9STRA1.690e-1828.24Transmembrane protein n=1 Tax=Achlya hypogyna TaxI... [more]
T0RIM1_SAPDV1.410e-1331.25GPS domain-containing protein n=1 Tax=Saprolegnia ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6744contigP-wetherbeei_contig6744:334..1071 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog42099.EPrPV00000019669
PFAMsGPS,REJ
Model size591
Max annot lvl121069|Pythiales
Hectar predicted targeting categorysignal anchor
Exons2
Evalue3.17e-22
EggNOG OGsKOG3599@1|root,KOG3599@2759|Eukaryota,1MCI1@121069|Pythiales
DescriptionTransmembrane protein. Source PGD
Cds size591
COG categoryPT
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186934.0084574-CDS-P-wetherbeei_contig6744:333..6361683186934.0084574-CDS-P-wetherbeei_contig6744:333..636Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6744 334..636 -
1683186934.020045-CDS-P-wetherbeei_contig6744:783..10711683186934.020045-CDS-P-wetherbeei_contig6744:783..1071Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6744 784..1071 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6744.1.1prot_P-wetherbeei_contig6744.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6744 334..1071 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6744.1.1

>prot_P-wetherbeei_contig6744.1.1 ID=prot_P-wetherbeei_contig6744.1.1|Name=mRNA_P-wetherbeei_contig6744.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=197bp
IYCSCTHLTDFGSQFGETAGLASTVLSQKITLGDIMNSMTVLITLLVIYG
AFIFGCIWGRYLDRKERLADMRANVTGVGLDGLPLQPDKKEVLLQLSTGL
IAARRYWEGLKQNHRLLSVYFLQDRVFTRPQRLMVLLCVLMGQLFTNAIL
YMQVGSAKDASVGERLQNMVFFAVMAVICGSPIGIILVLLFKRTGRQ
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mRNA from alignment at P-wetherbeei_contig6744:334..1071-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6744.1.1 ID=mRNA_P-wetherbeei_contig6744.1.1|Name=mRNA_P-wetherbeei_contig6744.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=738bp|location=Sequence derived from alignment at P-wetherbeei_contig6744:334..1071- (Phaeothamnion wetherbeei SAG_119_79)
ATTTACTGCTCTTGCACGCACCTCACGGACTTCGGCTCGCAGTTCGGGGA AACCGCCGGCCTAGCGTCAACGGTCCTGTCGCAGAAGATTACGCTAGGGG ACATCATGAACAGCATGACGGTGTTGATTACGCTGCTGGTCATCTACGGT GCCTTCATCTTCGGCTGCATCTGGGGCCGCTACCTCGACCGGAAGGAGCG GCTGGCGGATATGCGGGCCAATGTCACCGGCGTCGGCCTCGATGGCCTCC CGCTGCAGCCGGACAAGAAGGAGGTGCTGCTGCAGCTCGTGGAGGACGAT GTGCCGCGGCGCCGCCAGTCCGCCTTTGGTGCCGCCAGCCCGGCTTCCAA CAACGCCGACGTCGCTGCCGCTGCGTCTGCTACCGCCACACCTGCGGCGT CGGCGGCGGCGAAAAGGGCGTCGCCCGCTGCCAAGTCGACGGGGCTGATT GCGGCGCGGCGGTACTGGGAGGGCCTCAAACAGAACCACCGGCTGCTGTC GGTGTACTTCTTGCAAGACCGCGTCTTCACGCGGCCGCAGCGGTTGATGG TGCTGCTGTGCGTGCTGATGGGACAGCTCTTCACCAACGCCATCCTCTAT ATGCAGGTTGGCTCCGCCAAGGACGCCTCCGTCGGCGAGCGCCTCCAGAA CATGGTCTTCTTCGCCGTCATGGCCGTCATCTGCGGCTCGCCCATCGGCA TCATCCTGGTGCTGCTCTTCAAACGAACCGGCCGTCAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6744:334..1071-

>mRNA_P-wetherbeei_contig6744.1.1 ID=mRNA_P-wetherbeei_contig6744.1.1|Name=mRNA_P-wetherbeei_contig6744.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=591bp|location=Sequence derived from alignment at P-wetherbeei_contig6744:334..1071- (Phaeothamnion wetherbeei SAG_119_79)
ATTTACTGCTCTTGCACGCACCTCACGGACTTCGGCTCGCAGTTCGGGGA
AACCGCCGGCCTAGCGTCAACGGTCCTGTCGCAGAAGATTACGCTAGGGG
ACATCATGAACAGCATGACGGTGTTGATTACGCTGCTGGTCATCTACGGT
GCCTTCATCTTCGGCTGCATCTGGGGCCGCTACCTCGACCGGAAGGAGCG
GCTGGCGGATATGCGGGCCAATGTCACCGGCGTCGGCCTCGATGGCCTCC
CGCTGCAGCCGGACAAGAAGGAGGTGCTGCTGCAGCTCTCGACGGGGCTG
ATTGCGGCGCGGCGGTACTGGGAGGGCCTCAAACAGAACCACCGGCTGCT
GTCGGTGTACTTCTTGCAAGACCGCGTCTTCACGCGGCCGCAGCGGTTGA
TGGTGCTGCTGTGCGTGCTGATGGGACAGCTCTTCACCAACGCCATCCTC
TATATGCAGGTTGGCTCCGCCAAGGACGCCTCCGTCGGCGAGCGCCTCCA
GAACATGGTCTTCTTCGCCGTCATGGCCGTCATCTGCGGCTCGCCCATCG
GCATCATCCTGGTGCTGCTCTTCAAACGAACCGGCCGTCAG
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