mRNA_P-wetherbeei_contig6743.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6743.1.1
Unique NamemRNA_P-wetherbeei_contig6743.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6743.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6743contigP-wetherbeei_contig6743:1056..2802 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1747
Hectar predicted targeting categoryother localisation
Exons1
Cds size1023
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186933.9606948-UTR-P-wetherbeei_contig6743:1055..17791683186933.9606948-UTR-P-wetherbeei_contig6743:1055..1779Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6743 1056..1779 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186933.9754136-CDS-P-wetherbeei_contig6743:1779..28021683186933.9754136-CDS-P-wetherbeei_contig6743:1779..2802Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6743 1780..2802 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6743.1.1prot_P-wetherbeei_contig6743.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6743 1780..2802 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6743.1.1

>prot_P-wetherbeei_contig6743.1.1 ID=prot_P-wetherbeei_contig6743.1.1|Name=mRNA_P-wetherbeei_contig6743.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=341bp
MPISPTVAAAPRPAGSDAQSGSGGGGTGAGRPASHLSIAVGSPSESACGS
PRATHLVGTPHAAQQQLLTGGCGDGGDSDGPKSLTPKRRKSFSFGEDEPQ
PPPASRHSSRAPSPHPNSLHPGFGAGAGGGIDGSLSESGGADSLTKQLLS
FSLHTKKQKSVPSTLGGSNGGAGVASAAERNGGGGGLGAGTLSMHGLDGF
GGGLDVGSLAGGDDAAVVGGMAGADDGAVVGGIAGGLGGLGSFSAALLGA
DGDDADGATLGDHMFQCLGDDDLMGVLDDWDMTADGLGIGMGLADEPLPP
LDGDRIGDGGVFGGDTDDDCGVSKAGSFVKGEGSLGTAAI*
back to top

mRNA from alignment at P-wetherbeei_contig6743:1056..2802-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6743.1.1 ID=mRNA_P-wetherbeei_contig6743.1.1|Name=mRNA_P-wetherbeei_contig6743.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1747bp|location=Sequence derived from alignment at P-wetherbeei_contig6743:1056..2802- (Phaeothamnion wetherbeei SAG_119_79)
ATGCCAATCTCGCCGACGGTGGCCGCCGCGCCCAGACCGGCTGGTAGCGA
CGCGCAGAGCGGCAGCGGAGGCGGCGGCACCGGAGCCGGCCGCCCGGCCA
GCCACCTGAGCATCGCCGTGGGGAGCCCCTCGGAGAGCGCGTGCGGCAGC
CCACGCGCCACCCACCTCGTCGGGACGCCGCACGCTGCGCAACAGCAGCT
GCTGACGGGCGGCTGCGGCGACGGCGGCGACTCCGATGGGCCCAAGTCGC
TGACCCCGAAGCGGCGCAAGTCGTTCAGCTTCGGCGAGGACGAGCCGCAG
CCGCCACCAGCGTCCCGCCACAGCTCGCGGGCGCCGTCGCCGCATCCTAA
CAGCCTGCACCCGGGCTTTGGCGCCGGAGCCGGCGGCGGCATAGATGGAA
GCCTTTCCGAGTCCGGCGGCGCCGACTCGCTCACCAAGCAGCTGCTCAGC
TTCAGCCTCCACACCAAGAAGCAGAAGTCCGTGCCGTCCACGCTCGGCGG
CAGCAATGGCGGCGCCGGCGTGGCGTCCGCTGCCGAACGAAACGGCGGTG
GCGGCGGCCTGGGCGCGGGTACGCTGAGCATGCACGGCCTTGATGGCTTC
GGCGGCGGCCTCGACGTCGGCAGCCTCGCCGGCGGCGACGACGCCGCCGT
TGTCGGCGGCATGGCTGGCGCCGACGACGGCGCCGTGGTCGGCGGCATAG
CCGGCGGCCTGGGCGGGCTGGGCAGCTTCAGCGCAGCGCTGCTGGGCGCG
GACGGGGATGATGCCGACGGTGCGACGCTCGGCGACCACATGTTCCAGTG
CCTTGGCGATGACGACTTGATGGGTGTTTTGGACGATTGGGACATGACGG
CGGACGGCCTCGGCATAGGCATGGGGCTCGCGGACGAGCCGCTGCCGCCG
CTGGACGGCGATCGCATCGGCGACGGCGGCGTATTCGGCGGCGATACCGA
CGACGATTGTGGCGTCAGCAAGGCTGGCAGCTTCGTCAAGGGCGAGGGCA
GCCTCGGCACCGCCGCCATCTAACCGCGCGCTCTGGATGCGCGCGGCAGC
AGCGGCTGGTGGCAGAGGCAACGGCAGCAGTAAGCCGTTACGGCTGCGGC
GGCAGCTAACCGTTATCGCGGCGGCCATCTCAACAAAAGCAGCGCGGCGG
CGACGGCGACAGCTGGCAACGAAAAGAACCCTGCTGCTGCCGCCGCAGCA
GCACCGGGAACGCCTCTTCCCGCGGACGGATGATTCCGCCAAAAGAAAAG
AGGCCCATTTCCATTCCCATTCACAACCGACATCCAATTCGCCCGGTTCA
ACCACGCCAGCTGAGTGTTCGCGGCGCCCCATCCGGGCCTATGGAGGGCA
CCGGGGGCGCCATCGCCGCCGCGGCGGGGCGGGCTGGCTGGGCTGGCCAT
GGACGGATTCGAGCGATGCACACACAACGAACAACCAAAGTGGGAAAGCG
GCGCCGTGCCGCTTTCCGTCCGCGCAGTCGGACTTTGTCGAAATTGCATG
CTTGGGAGGAGGAACTAGTGTCTGCCGGTCGCGTTGGGGCAGGCTCAATA
ATCTGGCGGCAACGACGGCGGCGGCGGTGACGTTAATTGTCGGTGTTGGC
CGCCGTAGCCCGCCGGCCGGTAACACGGCTGCAGTGCCGCAAAGATGGGA
ACGGGAACCTGTCCCCCTCCCCCGAGTGAACGAGGAAAACGGCCCGCGCC
GTCTTAGCGGGCGGACGAAGGGAGGAAAGGAAGAAAGGGCAACGGCC
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig6743:1056..2802-

>mRNA_P-wetherbeei_contig6743.1.1 ID=mRNA_P-wetherbeei_contig6743.1.1|Name=mRNA_P-wetherbeei_contig6743.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1023bp|location=Sequence derived from alignment at P-wetherbeei_contig6743:1056..2802- (Phaeothamnion wetherbeei SAG_119_79)
ATGCCAATCTCGCCGACGGTGGCCGCCGCGCCCAGACCGGCTGGTAGCGA
CGCGCAGAGCGGCAGCGGAGGCGGCGGCACCGGAGCCGGCCGCCCGGCCA
GCCACCTGAGCATCGCCGTGGGGAGCCCCTCGGAGAGCGCGTGCGGCAGC
CCACGCGCCACCCACCTCGTCGGGACGCCGCACGCTGCGCAACAGCAGCT
GCTGACGGGCGGCTGCGGCGACGGCGGCGACTCCGATGGGCCCAAGTCGC
TGACCCCGAAGCGGCGCAAGTCGTTCAGCTTCGGCGAGGACGAGCCGCAG
CCGCCACCAGCGTCCCGCCACAGCTCGCGGGCGCCGTCGCCGCATCCTAA
CAGCCTGCACCCGGGCTTTGGCGCCGGAGCCGGCGGCGGCATAGATGGAA
GCCTTTCCGAGTCCGGCGGCGCCGACTCGCTCACCAAGCAGCTGCTCAGC
TTCAGCCTCCACACCAAGAAGCAGAAGTCCGTGCCGTCCACGCTCGGCGG
CAGCAATGGCGGCGCCGGCGTGGCGTCCGCTGCCGAACGAAACGGCGGTG
GCGGCGGCCTGGGCGCGGGTACGCTGAGCATGCACGGCCTTGATGGCTTC
GGCGGCGGCCTCGACGTCGGCAGCCTCGCCGGCGGCGACGACGCCGCCGT
TGTCGGCGGCATGGCTGGCGCCGACGACGGCGCCGTGGTCGGCGGCATAG
CCGGCGGCCTGGGCGGGCTGGGCAGCTTCAGCGCAGCGCTGCTGGGCGCG
GACGGGGATGATGCCGACGGTGCGACGCTCGGCGACCACATGTTCCAGTG
CCTTGGCGATGACGACTTGATGGGTGTTTTGGACGATTGGGACATGACGG
CGGACGGCCTCGGCATAGGCATGGGGCTCGCGGACGAGCCGCTGCCGCCG
CTGGACGGCGATCGCATCGGCGACGGCGGCGTATTCGGCGGCGATACCGA
CGACGATTGTGGCGTCAGCAAGGCTGGCAGCTTCGTCAAGGGCGAGGGCA
GCCTCGGCACCGCCGCCATCTAA
back to top