mRNA_P-wetherbeei_contig6738.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6738.1.1
Unique NamemRNA_P-wetherbeei_contig6738.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6738.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6738contigP-wetherbeei_contig6738:64..2016 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1470
Hectar predicted targeting categoryother localisation
Exons2
Cds size960
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186933.4083333-UTR-P-wetherbeei_contig6738:63..1121683186933.4083333-UTR-P-wetherbeei_contig6738:63..112Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6738 64..112 +
1683186933.4350805-UTR-P-wetherbeei_contig6738:1555..20161683186933.4350805-UTR-P-wetherbeei_contig6738:1555..2016Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6738 1556..2016 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186933.4169345-CDS-P-wetherbeei_contig6738:112..4601683186933.4169345-CDS-P-wetherbeei_contig6738:112..460Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6738 113..460 +
1683186933.4254124-CDS-P-wetherbeei_contig6738:943..15551683186933.4254124-CDS-P-wetherbeei_contig6738:943..1555Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6738 944..1555 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6738.1.1prot_P-wetherbeei_contig6738.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6738 113..1555 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6738.1.1

>prot_P-wetherbeei_contig6738.1.1 ID=prot_P-wetherbeei_contig6738.1.1|Name=mRNA_P-wetherbeei_contig6738.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=320bp
MFIPVFKELLNAVLRERVNERDLEYQDRIKGKEEHLMEQMCFFDAARFRF
ARVAVRFRACKVIAFPVAICFGSTVLLPQLRRCLATAATSAAAVCALRMR
NCEGRHRRESIEAQKKRLGLLLQGPLASRAHRSWGSWRRRERLARAFSRG
GRRRVRPTNFCAMPALRSFVFPTLRFASFATPSYLLVNRHIYRLRMCLVA
DCFKTVPRTLPLALPASAPVRACRPSALSERGNTQIPNSARHSWRRSRRP
ARHGRCGATARRCTCEAERQAQAFAESAGGKAEAEEQIGCRCAFCSGAAD
LETPRTRDARAGRASGNGR*
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mRNA from alignment at P-wetherbeei_contig6738:64..2016+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6738.1.1 ID=mRNA_P-wetherbeei_contig6738.1.1|Name=mRNA_P-wetherbeei_contig6738.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1953bp|location=Sequence derived from alignment at P-wetherbeei_contig6738:64..2016+ (Phaeothamnion wetherbeei SAG_119_79)
GAAGAAGAAGAAGAAGAAGAAGAAGCTGAATGATCCGTTCAATGCGGCCA
TGTTTATACCAGTATTCAAAGAGCTCTTGAATGCTGTCCTCCGGGAGAGA
GTGAATGAACGCGACCTGGAATACCAGGACCGTATCAAGGGAAAAGAGGA
GCACCTTATGGAGCAGATGTGCTTCTTTGACGCCGCTCGCTTCAGATTCG
CCCGGGTGGCAGTGAGGTTCAGAGCATGTAAGGTAATCGCGTTTCCTGTG
GCCATCTGTTTTGGTTCCACTGTACTGCTGCCGCAACTGCGCCGTTGCCT
CGCTACCGCCGCCACCTCTGCTGCCGCCGTTTGCGCCCTGCGGATGAGAA
ATTGCGAGGGGCGTCACCGTCGAGAGAGCATTGAGGCGCAGAAGAAGGCG
AGTGACGCTGCAAAGTTGCTCTGCCGCGAGATTGATGACGCTTGCAGCAG
GCGGAAAGCTATATTGAGACACAAAATGAGCCGCCGCGACGCCTGCCGAG
GCCCGAATTGTGCCGGGCGATTGTCGAAGTTACCCGTTCCCGTCGGTACG
TTTTCCCTTCTTTCGCCGGAGATAAGGCGGGTTTTCTTCTCTTCCGGAGA
AAACTGTGTTACGCTTTACATGGTTGAGCCTGATGACTTTTCCATGGTGG
CGTTCGACTGACGGCCTCTGCCTCTCGGTGTCAATGGCCGGTGCGCCGTG
GCAGAGAGGCGTCTTGTTGTAATTGCCTGCGCTTTTTCCCCTTCCAGTTT
CTGTTCTTTTCTAGTTGCTCTTTGCAACGAAAGTTGTAATTTGACCGGCC
TTCGGTCTTTTCTTTTGTCTGTCACCTTTATTTCTTCCACCCTTGCTCTG
TGCGGTCGGCTGCCCCGCCCTTTGTTGCAGCGGCTGGGCTTGCTATTGCA
GGGGCCGCTTGCAAGCAGAGCTCATCGAAGCTGGGGGAGCTGGAGGAGAA
GAGAGCGTTTAGCACGAGCTTTTTCCCGCGGAGGAAGGCGCCGCGTGCGG
CCCACGAATTTCTGCGCAATGCCGGCGCTGCGCTCGTTTGTCTTCCCAAC
CTTGCGATTTGCTTCGTTTGCAACACCATCTTATTTGTTGGTCAATCGAC
ATATTTACAGGCTCAGGATGTGCTTGGTTGCCGATTGCTTTAAGACTGTC
CCCAGAACGTTGCCCCTCGCTCTCCCAGCATCCGCGCCGGTTCGTGCATG
TCGGCCTTCCGCCCTTTCGGAACGCGGCAACACCCAGATTCCGAACTCAG
CAAGACACTCGTGGCGGCGGAGCAGGCGACCCGCGCGGCACGGGCGGTGC
GGCGCTACCGCCAGGAGATGTACCTGCGAGGCGGAGCGGCAGGCGCAGGC
GTTCGCGGAGAGCGCCGGTGGGAAGGCGGAGGCGGAGGAGCAGATAGGCT
GTCGGTGCGCGTTTTGCAGCGGCGCCGCGGACCTTGAGACGCCGAGGACG
CGTGATGCACGAGCCGGACGGGCGTCGGGAAACGGTAGGTAGCGAGCAGC
GGTGGAGGTTTGAATTTTTGCAGAGACGTCGGCCTCTGGCGCTGGCAGGC
GATGGAGGTTGACGCTGCGGATCGGTTCCGTTGGATTACTTGCTTGTCGG
GGCTTTCTTGCGAAGCGGAGGGCAGAGAGAGAGGAGAAGAGGAAGCACTG
TAGATCGCGACGGTAGGGGAACGCCAAACCTCGCTGTTACTGCGGCGGCT
GTGAGGGCGGTTGCTGCATGATATGACAGCGACATCGAAAGATATATGGC
TACATCGATGGTGAATTCTGTCATGGCTGAAGGTCCTTGTTTCCATGATG
GTACACGGAGATACGGCTTCGTATGTGATTGGAGGCAGTCAATGTTCGGG
CGTGTGGAGGAAATTATTGGGAAGCGCTCCAACAGGATGGATGCCTCAAT
GGCCTGCTATTAAAGCAGAACCGGAAATAATTGATGACAGGGAAGTCCAT
CCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6738:64..2016+

>mRNA_P-wetherbeei_contig6738.1.1 ID=mRNA_P-wetherbeei_contig6738.1.1|Name=mRNA_P-wetherbeei_contig6738.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=960bp|location=Sequence derived from alignment at P-wetherbeei_contig6738:64..2016+ (Phaeothamnion wetherbeei SAG_119_79)
ATGTTTATACCAGTATTCAAAGAGCTCTTGAATGCTGTCCTCCGGGAGAG
AGTGAATGAACGCGACCTGGAATACCAGGACCGTATCAAGGGAAAAGAGG
AGCACCTTATGGAGCAGATGTGCTTCTTTGACGCCGCTCGCTTCAGATTC
GCCCGGGTGGCAGTGAGGTTCAGAGCATGTAAGGTAATCGCGTTTCCTGT
GGCCATCTGTTTTGGTTCCACTGTACTGCTGCCGCAACTGCGCCGTTGCC
TCGCTACCGCCGCCACCTCTGCTGCCGCCGTTTGCGCCCTGCGGATGAGA
AATTGCGAGGGGCGTCACCGTCGAGAGAGCATTGAGGCGCAGAAGAAGCG
GCTGGGCTTGCTATTGCAGGGGCCGCTTGCAAGCAGAGCTCATCGAAGCT
GGGGGAGCTGGAGGAGAAGAGAGCGTTTAGCACGAGCTTTTTCCCGCGGA
GGAAGGCGCCGCGTGCGGCCCACGAATTTCTGCGCAATGCCGGCGCTGCG
CTCGTTTGTCTTCCCAACCTTGCGATTTGCTTCGTTTGCAACACCATCTT
ATTTGTTGGTCAATCGACATATTTACAGGCTCAGGATGTGCTTGGTTGCC
GATTGCTTTAAGACTGTCCCCAGAACGTTGCCCCTCGCTCTCCCAGCATC
CGCGCCGGTTCGTGCATGTCGGCCTTCCGCCCTTTCGGAACGCGGCAACA
CCCAGATTCCGAACTCAGCAAGACACTCGTGGCGGCGGAGCAGGCGACCC
GCGCGGCACGGGCGGTGCGGCGCTACCGCCAGGAGATGTACCTGCGAGGC
GGAGCGGCAGGCGCAGGCGTTCGCGGAGAGCGCCGGTGGGAAGGCGGAGG
CGGAGGAGCAGATAGGCTGTCGGTGCGCGTTTTGCAGCGGCGCCGCGGAC
CTTGAGACGCCGAGGACGCGTGATGCACGAGCCGGACGGGCGTCGGGAAA
CGGTAGGTAG
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