mRNA_P-wetherbeei_contig6731.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6731.1.1
Unique NamemRNA_P-wetherbeei_contig6731.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig6731.1.1 vs. uniprot
Match: A0A427A583_ENSVE (GCK domain-containing protein n=3 Tax=Musaceae TaxID=4637 RepID=A0A427A583_ENSVE)

HSP 1 Score: 58.2 bits (139), Expect = 1.530e-6
Identity = 28/79 (35.44%), Postives = 38/79 (48.10%), Query Frame = 1 
Query:  199 EEWPETECAMCKHMRHGPCKRMWRAWERCIDLAGARGDDVGRKCSALAQLHHRCAARHFSYYAATFDGLDALEMLLDDA 435
            EE  E EC  C  M+ G CK  + AWE+C++ A  R DD+  KC+ +  L  +C   H  YY        A+     DA
Sbjct:   55 EEEEEEECGFCLFMKGGGCKDAFVAWEKCVEDAEKRSDDIVDKCAEVTALLKKCMDAHADYYEPVLRAEQAMVEAAADA 133
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BLAST of mRNA_P-wetherbeei_contig6731.1.1 vs. uniprot
Match: A0A444C3P3_ENSVE (GCK domain-containing protein n=2 Tax=Ensete ventricosum TaxID=4639 RepID=A0A444C3P3_ENSVE)

HSP 1 Score: 55.5 bits (132), Expect = 1.160e-5
Identity = 25/73 (34.25%), Postives = 35/73 (47.95%), Query Frame = 1 
Query:  217 ECAMCKHMRHGPCKRMWRAWERCIDLAGARGDDVGRKCSALAQLHHRCAARHFSYYAATFDGLDALEMLLDDA 435
            EC  C  M+ G CK  + AWE+C++ A  R DD+  KC+ +  L  +C   H  YY        A+     DA
Sbjct:   69 ECGFCLFMKGGGCKDAFVAWEKCVEDAEKRSDDIVDKCAEVTALLKKCMDAHADYYEPVLRAEQAMVEAAADA 141
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BLAST of mRNA_P-wetherbeei_contig6731.1.1 vs. uniprot
Match: UPI002008F058 (uncharacterized protein LOC125205641 n=1 Tax=Salvia hispanica TaxID=49212 RepID=UPI002008F058)

HSP 1 Score: 55.5 bits (132), Expect = 1.290e-5
Identity = 29/77 (37.66%), Postives = 39/77 (50.65%), Query Frame = 1 
Query:  187 AEPEEEWPETECAMCKHMRHGPCKRMWRAWERCIDLAGARGDDVGRKCSALAQLHHRCAARHFSYYAATFDGLDALE 417
            AE EEE  E EC  C  M+ G CK  +  WE+CI+ A  + +DV +KC  +     +C   H  YYA       +LE
Sbjct:   58 AEGEEE-EEGECGFCLFMKGGGCKETFVEWEKCIEEAEKKEEDVVQKCFQVTTALKKCMEAHSDYYAPILQAEKSLE 133
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BLAST of mRNA_P-wetherbeei_contig6731.1.1 vs. uniprot
Match: A0A444F540_ENSVE (GCK domain-containing protein n=3 Tax=Musaceae TaxID=4637 RepID=A0A444F540_ENSVE)

HSP 1 Score: 53.5 bits (127), Expect = 4.380e-5
Identity = 24/58 (41.38%), Postives = 31/58 (53.45%), Query Frame = 1 
Query:  211 ETECAMCKHMRHGPCKRMWRAWERCIDLAGARGDDVGRKCSALAQLHHRCAARHFSYY 384
            E EC  C  M+ G CK  + AWE+C+  A  R +D+  KCS  A L  +C   H  YY
Sbjct:   56 EGECGFCLFMKGGGCKGAFVAWEKCMQEAEKRDEDIFDKCSEAAGLLKKCMDAHPDYY 113
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BLAST of mRNA_P-wetherbeei_contig6731.1.1 vs. uniprot
Match: A0A7N0V7T0_KALFE (GCK domain-containing protein n=1 Tax=Kalanchoe fedtschenkoi TaxID=63787 RepID=A0A7N0V7T0_KALFE)

HSP 1 Score: 52.8 bits (125), Expect = 9.560e-5
Identity = 26/78 (33.33%), Postives = 39/78 (50.00%), Query Frame = 1 
Query:  217 ECAMCKHMRHGPCKRMWRAWERCIDLAGARGDDVGRKCSALAQLHHRCAARHFSYY-----AATFDGLDALEMLLDDA 435
            EC  C  M+ G CK  + AWE+C++ A  R +DV  KC     +  +C   H  YY     A      +A+E+L ++A
Sbjct:   53 ECGFCLFMKGGGCKESFVAWEKCVEEAEERKEDVVSKCVEATVMLKKCMEAHSEYYEPVLRAERVAEEEAVELLQEEA 130
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6731.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A427A583_ENSVE1.530e-635.44GCK domain-containing protein n=3 Tax=Musaceae Tax... [more]
A0A444C3P3_ENSVE1.160e-534.25GCK domain-containing protein n=2 Tax=Ensete ventr... [more]
UPI002008F0581.290e-537.66uncharacterized protein LOC125205641 n=1 Tax=Salvi... [more]
A0A444F540_ENSVE4.380e-541.38GCK domain-containing protein n=3 Tax=Musaceae Tax... [more]
A0A7N0V7T0_KALFE9.560e-533.33GCK domain-containing protein n=1 Tax=Kalanchoe fe... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6731contigP-wetherbeei_contig6731:863..2575 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog4641.GSMUA_Achr5P23180_001
PFAMsGCK
Model size1141
Max annot lvl35493|Streptophyta
Hectar predicted targeting categoryother localisation
Exons3
Evalue9.05e-09
EggNOG OGs2CP4U@1|root,2S8YI@2759|Eukaryota,37XDJ@33090|Viridiplantae,3GXFS@35493|Streptophyta,3MBGA@4447|Liliopsida
DescriptionGCK
Cds size699
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186933.1179717-UTR-P-wetherbeei_contig6731:862..9041683186933.1179717-UTR-P-wetherbeei_contig6731:862..904Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6731 863..904 +
1683186933.154793-UTR-P-wetherbeei_contig6731:2175..25751683186933.154793-UTR-P-wetherbeei_contig6731:2175..2575Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6731 2176..2575 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186933.1304007-CDS-P-wetherbeei_contig6731:904..10781683186933.1304007-CDS-P-wetherbeei_contig6731:904..1078Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6731 905..1078 +
1683186933.1386046-CDS-P-wetherbeei_contig6731:1248..13131683186933.1386046-CDS-P-wetherbeei_contig6731:1248..1313Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6731 1249..1313 +
1683186933.146785-CDS-P-wetherbeei_contig6731:1715..21751683186933.146785-CDS-P-wetherbeei_contig6731:1715..2175Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6731 1716..2175 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6731.1.1prot_P-wetherbeei_contig6731.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6731 905..2175 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6731.1.1

>prot_P-wetherbeei_contig6731.1.1 ID=prot_P-wetherbeei_contig6731.1.1|Name=mRNA_P-wetherbeei_contig6731.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=233bp
MPLAEAAKIAAAEERAAEEAEAQQEGPTEPTEMKSEESEEDDHYVNLEAE
PEEEWPETECAMCKHMRHGPCKRMWRAWERCIDLAGARGDDVGRKCSALA
QLHHRCAARHFSYYAATFDGLDALEMLLDDAQEQGLLTDAGRAAVEEEVR
EFRRRVEKGDFGSGGEGGEDGGGEGGEDGGDGGSDDGDGGISGSSGGDSG
SGDDPGSISSPGAGSGSSGDAAAGEGKGAQPP*
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mRNA from alignment at P-wetherbeei_contig6731:863..2575+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6731.1.1 ID=mRNA_P-wetherbeei_contig6731.1.1|Name=mRNA_P-wetherbeei_contig6731.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1713bp|location=Sequence derived from alignment at P-wetherbeei_contig6731:863..2575+ (Phaeothamnion wetherbeei SAG_119_79)
GAGGGATGTTTGGTCGATGTCCCTGGCGGAGGGCCGCCAGTGATGCCACT
CGCCGAAGCCGCAAAGATCGCGGCAGCAGAAGAACGGGCTGCTGAGGAAG
CCGAGGCGCAACAGGAGGGCCCGACTGAACCGACTGAAATGAAGAGCGAA
GAGTCCGAGGAGGACGATCATTACGTCAACCTGGAGGCTGAACCTGAGGA
GGAATGGCCCGAGACAGTGAGTTTAAACAATCTTTTGCGCGCTGCCAGTC
CGTTCTTTCCAAAAAAAATCTTGCCATGCTGACAGAACTGTTGCACTCCC
TATTGGAATCCTTTCTGCTTGCAAAATTTGACCCAGTGCGGCACGCTCAC
CGTGCACGGCTCGCCTTTCCTCTCGCATAATTGCAGGAGTGTGCCATGTG
TAAGCACATGCGGCACGGCCCCTGCAAACGGATGTGGCGAGCATGGGAGC
GGTGAGGTCACGTTGACTTGCAACGAGGCAAAAGCTTGTTTTGCTTCTCC
TTTGCTACCATCTGTACTTGTTCCACGTCTCGCCCGTTGATGGACGCGGT
ACCTGATGCCGGTAGCGTTAAAGGTTGATCCATGCGAAGTCACAATGTTA
TGAATCAAACAGTCATTGTGCTCCTTTGAAAGTTGGCCCCGTCTTTGTGA
CTGATGTGGCCAGATTCGGCATCCGCAAACTTACTGACCGCCATGTGTTC
TTCTCCTAATCCTAAGCTCTTGCGCCGCCCGCGATTTCATCTCGCGACAC
CTCTTTTGCCGGTCGGGCAACCAACTGATCAACTGATCCGGTCTGGTGCA
ACCCGATTCTACTCGATTTAACCACATTCGACACACGGCCGGCCGCGGCG
CAGCTGCATCGACCTGGCCGGCGCACGCGGCGACGACGTCGGCCGCAAGT
GCTCGGCCCTCGCCCAGCTGCACCACCGCTGTGCGGCGCGCCACTTCTCC
TACTATGCCGCAACTTTCGACGGCCTCGACGCGCTGGAGATGCTGCTGGA
CGACGCGCAGGAGCAGGGACTCCTGACGGACGCCGGGCGGGCGGCGGTGG
AGGAGGAGGTGCGAGAGTTCCGCCGCCGCGTCGAAAAGGGTGACTTCGGC
AGCGGCGGCGAAGGCGGGGAGGACGGCGGCGGTGAAGGCGGGGAGGACGG
CGGCGACGGCGGTTCCGACGATGGTGACGGTGGCATCTCTGGCAGCAGCG
GCGGCGACAGCGGTAGCGGCGACGATCCAGGCAGCATCAGTTCTCCCGGC
GCTGGCAGCGGCTCTTCCGGCGACGCTGCTGCCGGCGAGGGGAAGGGTGC
GCAACCGCCATAGCGGCGGCTGAAGGGAGGTGCGGGCGTTTCCGATTTGT
GCTTCGTCGCAGCCGTCCACCGCCTTGAGCAGTTAGGCAAGGCGGAAACC
GGAAAGCATCGGCAACCACAAGACTCTACTGGCAAGCGCCGGCTTCGTCA
TCGATGAGCGATGACTGCCACCCTGCCGCCGTCACACAGTGCAAGACTGC
CGGCCCGATCAGGGGCACCGGGGACGCAGTGTAAGCCAACAGAGATAGAC
AGGAGATCGGAAAAGGCAGTTACATGAGGTAGGAAAGCACACTTCAGATG
CGCACGGCCGCAGTCGGGTCGTGCCGAGCCGGAGCGCGCCGTGCCAGCCG
ATATCACATCAAAAGAATAAGAGATGGCCGACAGCGAAAATGTACATAAA
ACACTAAGCCACT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6731:863..2575+

>mRNA_P-wetherbeei_contig6731.1.1 ID=mRNA_P-wetherbeei_contig6731.1.1|Name=mRNA_P-wetherbeei_contig6731.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=699bp|location=Sequence derived from alignment at P-wetherbeei_contig6731:863..2575+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCCACTCGCCGAAGCCGCAAAGATCGCGGCAGCAGAAGAACGGGCTGC
TGAGGAAGCCGAGGCGCAACAGGAGGGCCCGACTGAACCGACTGAAATGA
AGAGCGAAGAGTCCGAGGAGGACGATCATTACGTCAACCTGGAGGCTGAA
CCTGAGGAGGAATGGCCCGAGACAGAGTGTGCCATGTGTAAGCACATGCG
GCACGGCCCCTGCAAACGGATGTGGCGAGCATGGGAGCGCTGCATCGACC
TGGCCGGCGCACGCGGCGACGACGTCGGCCGCAAGTGCTCGGCCCTCGCC
CAGCTGCACCACCGCTGTGCGGCGCGCCACTTCTCCTACTATGCCGCAAC
TTTCGACGGCCTCGACGCGCTGGAGATGCTGCTGGACGACGCGCAGGAGC
AGGGACTCCTGACGGACGCCGGGCGGGCGGCGGTGGAGGAGGAGGTGCGA
GAGTTCCGCCGCCGCGTCGAAAAGGGTGACTTCGGCAGCGGCGGCGAAGG
CGGGGAGGACGGCGGCGGTGAAGGCGGGGAGGACGGCGGCGACGGCGGTT
CCGACGATGGTGACGGTGGCATCTCTGGCAGCAGCGGCGGCGACAGCGGT
AGCGGCGACGATCCAGGCAGCATCAGTTCTCCCGGCGCTGGCAGCGGCTC
TTCCGGCGACGCTGCTGCCGGCGAGGGGAAGGGTGCGCAACCGCCATAG
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