mRNA_P-wetherbeei_contig6729.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6729.2.1
Unique NamemRNA_P-wetherbeei_contig6729.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
[Close]
BLAST of mRNA_P-wetherbeei_contig6729.2.1 vs. uniprot
Match: A0A835YP60_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YP60_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 7.510e-7
Identity = 33/72 (45.83%), Postives = 44/72 (61.11%), Query Frame = 1 
Query:  181 VTSMTDEQLLRRAGMEWSGERALSTDPMGRTLVQVCRRGYFPEVVRDALNDMWDRDLSYDDPDAVVEHLLLR 396
            + S  D   LR  G+     RA    P+   L++VCRRGY PE VR  L+ MW+ D++YD+PDAVVE L L+
Sbjct:  100 LVSAADVDELRATGL-----RASRVGPLAMVLLEVCRRGYAPEEVRVVLDSMWEADVAYDNPDAVVEQLTLQ 166
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6729.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835YP60_9STRA7.510e-745.83Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6729contigP-wetherbeei_contig6729:1321..3018 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size1698
Hectar predicted targeting categoryother localisation
Exons1
Cds size1698
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186932.7787125-CDS-P-wetherbeei_contig6729:1320..30181683186932.7787125-CDS-P-wetherbeei_contig6729:1320..3018Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6729 1321..3018 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6729.2.1prot_P-wetherbeei_contig6729.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6729 1321..3018 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6729.2.1

>prot_P-wetherbeei_contig6729.2.1 ID=prot_P-wetherbeei_contig6729.2.1|Name=mRNA_P-wetherbeei_contig6729.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=566bp
VLDQEDSEGEEQAEAATKTRKKKKNRKKKKAAELDDTAGKPNAVPTKTSA
AVAVAPQGDSVTSMTDEQLLRRAGMEWSGERALSTDPMGRTLVQVCRRGY
FPEVVRDALNDMWDRDLSYDDPDAVVEHLLLRWGNEAAQAVAQSPPLPSV
AGIDAVMATAAAAESAKAATANGHTLQNGHGNSAGKGAIGDKKPAGASGK
KGVPTGAAAPTPAPIPAPAAPAAPSAAPVPAPTPPPAPPTLEARLEMAAS
HSSMTDALSAITAWASVAQPQDGGGLGALFNSDALDLLFANFIAQPAREL
DVAAPALYGLLDRIMPNLSRSAVGGASPSSLINSGASDVVNHACRAAAAL
TNLAAVDGGSTRSGAGGSKEGPAIRAVARRLADIVKGHHAAAAGALAAPA
LLREAEATVAGSAASPPHQAGRPEGVGELFTRREKRRDAALTLERACLIA
LQGQSTASKGRAGGSGSIVCGAGEAGGADDALLEALLTASAAAAASGDGG
GGGSATALTAEDVRRARSDLEAARHQLRAVRAESEARAGPLAAEADALAA
HAMELSLRRAALLEEV
back to top

mRNA from alignment at P-wetherbeei_contig6729:1321..3018+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6729.2.1 ID=mRNA_P-wetherbeei_contig6729.2.1|Name=mRNA_P-wetherbeei_contig6729.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1698bp|location=Sequence derived from alignment at P-wetherbeei_contig6729:1321..3018+ (Phaeothamnion wetherbeei SAG_119_79)
GTCCTCGATCAGGAAGACTCGGAGGGAGAAGAACAGGCCGAGGCGGCGAC
TAAGACGCGCAAGAAGAAGAAGAACCGCAAAAAGAAAAAGGCGGCGGAGC
TAGATGACACTGCGGGCAAACCAAATGCTGTTCCCACAAAGACTAGTGCA
GCCGTCGCCGTCGCTCCGCAAGGCGATTCAGTGACGTCAATGACGGACGA
GCAGCTGCTGAGGCGCGCCGGCATGGAATGGAGCGGCGAGCGCGCGCTGA
GCACCGATCCCATGGGACGAACGCTGGTGCAGGTGTGCCGACGGGGCTAC
TTTCCCGAGGTGGTGCGCGACGCGCTCAATGACATGTGGGACCGCGATCT
GTCGTACGACGATCCTGACGCCGTCGTCGAGCACCTGTTGCTGCGCTGGG
GCAACGAAGCGGCCCAGGCTGTGGCCCAATCGCCGCCTCTGCCGAGTGTT
GCGGGGATCGATGCCGTGATGGCAACGGCGGCCGCCGCAGAGTCGGCAAA
GGCCGCCACCGCCAACGGCCACACTCTTCAAAACGGCCACGGCAACTCTG
CCGGGAAGGGCGCCATTGGCGACAAGAAGCCCGCGGGAGCATCTGGCAAA
AAGGGGGTTCCTACGGGCGCGGCGGCGCCCACACCCGCGCCCATTCCAGC
GCCGGCGGCGCCAGCCGCTCCCTCCGCCGCGCCTGTGCCGGCGCCGACGC
CGCCGCCCGCGCCGCCGACGCTGGAGGCGCGCCTGGAGATGGCGGCCAGC
CACAGTAGCATGACGGACGCGCTGTCTGCCATCACGGCGTGGGCGTCTGT
GGCTCAGCCGCAGGACGGCGGCGGCCTCGGGGCGCTGTTCAACTCGGATG
CGCTGGACCTCCTCTTTGCCAATTTCATCGCCCAGCCGGCGCGGGAGCTC
GACGTCGCGGCGCCAGCGCTCTACGGGCTCCTCGACCGCATAATGCCCAA
CTTAAGCCGCTCGGCCGTCGGCGGCGCATCGCCATCATCGCTGATCAACT
CCGGCGCCAGCGACGTCGTGAACCACGCCTGCCGCGCCGCCGCCGCCCTC
ACCAACCTGGCTGCCGTCGATGGCGGCAGCACTCGCAGCGGTGCCGGTGG
CAGCAAGGAGGGCCCCGCCATCCGTGCTGTGGCACGGCGGCTGGCGGACA
TCGTCAAGGGCCACCACGCGGCGGCGGCGGGCGCGCTGGCGGCGCCTGCG
CTGCTGAGGGAGGCCGAGGCTACGGTGGCAGGATCAGCGGCGTCGCCCCC
GCACCAGGCGGGGCGGCCAGAGGGCGTCGGCGAGTTGTTCACCCGCCGCG
AGAAGCGCCGCGATGCCGCGCTGACGCTGGAGCGCGCCTGTCTCATCGCC
CTGCAGGGACAGAGCACTGCCAGCAAGGGACGCGCCGGAGGCAGTGGCAG
CATTGTCTGTGGCGCGGGCGAGGCGGGTGGGGCTGACGATGCGCTTCTCG
AGGCGCTGCTCACCGCCAGCGCGGCCGCAGCGGCCTCCGGAGACGGCGGC
GGCGGCGGCAGTGCGACCGCGCTCACGGCGGAGGATGTCCGACGCGCCCG
CAGTGACCTGGAGGCGGCACGCCACCAGCTGCGGGCGGTGCGCGCCGAGT
CGGAGGCGCGGGCCGGCCCGTTGGCCGCCGAGGCAGATGCGCTCGCGGCG
CACGCCATGGAGTTGTCGCTGCGGCGGGCGGCACTCCTGGAAGAGGTT
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig6729:1321..3018+

>mRNA_P-wetherbeei_contig6729.2.1 ID=mRNA_P-wetherbeei_contig6729.2.1|Name=mRNA_P-wetherbeei_contig6729.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1698bp|location=Sequence derived from alignment at P-wetherbeei_contig6729:1321..3018+ (Phaeothamnion wetherbeei SAG_119_79)
GTCCTCGATCAGGAAGACTCGGAGGGAGAAGAACAGGCCGAGGCGGCGAC
TAAGACGCGCAAGAAGAAGAAGAACCGCAAAAAGAAAAAGGCGGCGGAGC
TAGATGACACTGCGGGCAAACCAAATGCTGTTCCCACAAAGACTAGTGCA
GCCGTCGCCGTCGCTCCGCAAGGCGATTCAGTGACGTCAATGACGGACGA
GCAGCTGCTGAGGCGCGCCGGCATGGAATGGAGCGGCGAGCGCGCGCTGA
GCACCGATCCCATGGGACGAACGCTGGTGCAGGTGTGCCGACGGGGCTAC
TTTCCCGAGGTGGTGCGCGACGCGCTCAATGACATGTGGGACCGCGATCT
GTCGTACGACGATCCTGACGCCGTCGTCGAGCACCTGTTGCTGCGCTGGG
GCAACGAAGCGGCCCAGGCTGTGGCCCAATCGCCGCCTCTGCCGAGTGTT
GCGGGGATCGATGCCGTGATGGCAACGGCGGCCGCCGCAGAGTCGGCAAA
GGCCGCCACCGCCAACGGCCACACTCTTCAAAACGGCCACGGCAACTCTG
CCGGGAAGGGCGCCATTGGCGACAAGAAGCCCGCGGGAGCATCTGGCAAA
AAGGGGGTTCCTACGGGCGCGGCGGCGCCCACACCCGCGCCCATTCCAGC
GCCGGCGGCGCCAGCCGCTCCCTCCGCCGCGCCTGTGCCGGCGCCGACGC
CGCCGCCCGCGCCGCCGACGCTGGAGGCGCGCCTGGAGATGGCGGCCAGC
CACAGTAGCATGACGGACGCGCTGTCTGCCATCACGGCGTGGGCGTCTGT
GGCTCAGCCGCAGGACGGCGGCGGCCTCGGGGCGCTGTTCAACTCGGATG
CGCTGGACCTCCTCTTTGCCAATTTCATCGCCCAGCCGGCGCGGGAGCTC
GACGTCGCGGCGCCAGCGCTCTACGGGCTCCTCGACCGCATAATGCCCAA
CTTAAGCCGCTCGGCCGTCGGCGGCGCATCGCCATCATCGCTGATCAACT
CCGGCGCCAGCGACGTCGTGAACCACGCCTGCCGCGCCGCCGCCGCCCTC
ACCAACCTGGCTGCCGTCGATGGCGGCAGCACTCGCAGCGGTGCCGGTGG
CAGCAAGGAGGGCCCCGCCATCCGTGCTGTGGCACGGCGGCTGGCGGACA
TCGTCAAGGGCCACCACGCGGCGGCGGCGGGCGCGCTGGCGGCGCCTGCG
CTGCTGAGGGAGGCCGAGGCTACGGTGGCAGGATCAGCGGCGTCGCCCCC
GCACCAGGCGGGGCGGCCAGAGGGCGTCGGCGAGTTGTTCACCCGCCGCG
AGAAGCGCCGCGATGCCGCGCTGACGCTGGAGCGCGCCTGTCTCATCGCC
CTGCAGGGACAGAGCACTGCCAGCAAGGGACGCGCCGGAGGCAGTGGCAG
CATTGTCTGTGGCGCGGGCGAGGCGGGTGGGGCTGACGATGCGCTTCTCG
AGGCGCTGCTCACCGCCAGCGCGGCCGCAGCGGCCTCCGGAGACGGCGGC
GGCGGCGGCAGTGCGACCGCGCTCACGGCGGAGGATGTCCGACGCGCCCG
CAGTGACCTGGAGGCGGCACGCCACCAGCTGCGGGCGGTGCGCGCCGAGT
CGGAGGCGCGGGCCGGCCCGTTGGCCGCCGAGGCAGATGCGCTCGCGGCG
CACGCCATGGAGTTGTCGCTGCGGCGGGCGGCACTCCTGGAAGAGGTT
back to top