mRNA_P-wetherbeei_contig6728.1.5 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6728.1.5
Unique NamemRNA_P-wetherbeei_contig6728.1.5
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig6728.1.5 vs. uniprot
Match: A0A6H5L6M4_9PHAE (EFG_C domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L6M4_9PHAE)

HSP 1 Score: 292 bits (748), Expect = 4.660e-84
Identity = 178/314 (56.69%), Postives = 216/314 (68.79%), Query Frame = 1
Query:   25 ADEEVQAIVWRAIGSGATAGFQLASVAGPLAGEEMYGVIFVVESVEITASCV-----------GLEEIAAGAGAXXXXASSGSVGAPPSSSAEFDAAAVVGEVATAAAGDVVTDVAAAVAPRHAASPAVAGGLRQRRPVHPQ--FGPLSGQIISAAKSACRAAFLCCPARLVEAHYRCSLQCDQAQLGNMYAVLSRRRGRVTNEDLVEGTQLFLLDALLPVAESFGFAGELFKRTSGGGTTPQLSFSHWEVVDVDPFWRPLTEEEREDEGEGSHLNATNVARRHIDAVRRRKGLATADKIVMAAEKQRTLTRNK 927
            A EE  +   R I +    GFQLA++AGPLAGEE++G+ F++E VEITA C+                      XXXX   G   + P +  E  +    G     A+G+   D  A+V  + +    VAG  R  +P   +  +GPL+GQIIS  +  CRA+ LCCP RLVEA YRCSLQCDQ QLGNMYAVLS+RRGRV +EDLVEGTQLFLL ALLPVAESFGFA EL K+TSG GTTPQL+FSHWEV+++DPFWRP TEEEREDEGE  HL+ TN+AR+++D VR+RKGLAT DKIV+AAEKQRTLTRNK
Sbjct:  824 ASEEEASEALRLIENSVITGFQLATLAGPLAGEELHGLCFLLEKVEITAECLTSGSSXXXXXXXXXXXXXXXXXXXXXXXXGGDSSSPVTPLEDGSGTGEG---VGASGEGSDDDGASVG-KGSVESGVAGERRGPQPQDQRRRYGPLTGQIISVVRMGCRASMLCCPVRLVEAFYRCSLQCDQLQLGNMYAVLSKRRGRVVDEDLVEGTQLFLLTALLPVAESFGFADELLKKTSGAGTTPQLAFSHWEVMELDPFWRPQTEEEREDEGEEGHLSVTNIARQYLDGVRKRKGLATNDKIVVAAEKQRTLTRNK 1133          
BLAST of mRNA_P-wetherbeei_contig6728.1.5 vs. uniprot
Match: A0A7S3XN80_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XN80_HETAK)

HSP 1 Score: 238 bits (608), Expect = 2.440e-72
Identity = 123/171 (71.93%), Postives = 136/171 (79.53%), Query Frame = 1
Query:  415 QFGPLSGQIISAAKSACRAAFLCCPARLVEAHYRCSLQCDQAQLGNMYAVLSRRRGRVTNEDLVEGTQLFLLDALLPVAESFGFAGELFKRTSGGGTTPQLSFSHWEVVDVDPFWRPLTEEEREDEGEGSHLNATNVARRHIDAVRRRKGLATADKIVMAAEKQRTLTRNK 927
            +FGPLSGQIIS  K   RAA   CPARLVEA Y C LQCDQ QLGNMY VL++RRGRVT ED+VEGT LF+L A LPVAESFGFAGEL  RTSG  T PQL+FSHWEV+D+DPFWRP TEEERED GE   +  +N ARR+IDAVR RKGLAT  +IV+AAEKQRTL R K
Sbjct:   41 RFGPLSGQIISNIKDGVRAAVASCPARLVEAFYSCELQCDQQQLGNMYGVLAKRRGRVTEEDIVEGTALFVLGAALPVAESFGFAGELLTRTSGAATAPQLAFSHWEVIDLDPFWRPTTEEEREDLGE--EVRESNFARRYIDAVRARKGLATDKRIVVAAEKQRTLARKK 209          
BLAST of mRNA_P-wetherbeei_contig6728.1.5 vs. uniprot
Match: A0A7S3XMW0_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XMW0_HETAK)

HSP 1 Score: 245 bits (625), Expect = 7.310e-72
Identity = 148/306 (48.37%), Postives = 176/306 (57.52%), Query Frame = 1
Query:   28 DEEVQAIVWRAIGSGATAGFQLASVAGPLAGEEMYGVIFVVESVEITASCV------GLEEIAAGAGAXXXXASSGSVGAPPSSSAEFDAAAVVGEVATAAAGDVVTDVAAAVAPRHAASPAVAGGLRQRRPVHPQFGPLSGQIISAAKSACRAAFLCCPARLVEAHYRCSLQCDQAQLGNMYAVLSRRRGRVTNEDLVEGTQLFLLDALLPVAESFGFAGELFKRTSGGGTTPQLSFSHWEVVDVDPFWRPLTEEEREDEGEGSHLNATNVARRHIDAVRRRKGLATADKIVMAAEKQRTLTRNK 927
            +EE  A  W  + +G  +GFQLA+ AGP+  E+MYG+  +V  +EI +  +       L+ ++   GA    AS                                                             +FGPLSGQIIS  K   RAA   CPARLVEA Y C LQCDQ QLGNMY VL++RRGRVT ED+VEGT LF+L A LPVAESFGFAGEL  RTSG  T PQL+FSHWEV+D+DPFWRP TEEERED GE   +  +N ARR+IDAVR RKGLAT  +IV+AAEKQRTL R K
Sbjct:  195 NEEASA-AWSLVANGIASGFQLATAAGPIMEEQMYGICIIVTKIEIASHLLVSSEEPSLQTLSISEGANIDTAS-------------------------------------------------------------RFGPLSGQIISNIKDGVRAAVASCPARLVEAFYSCELQCDQQQLGNMYGVLAKRRGRVTEEDIVEGTALFVLGAALPVAESFGFAGELLTRTSGAATAPQLAFSHWEVIDLDPFWRPTTEEEREDLGE--EVRESNFARRYIDAVRARKGLATDKRIVVAAEKQRTLARKK 436          
BLAST of mRNA_P-wetherbeei_contig6728.1.5 vs. uniprot
Match: A0A7S2AZY7_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2AZY7_9STRA)

HSP 1 Score: 193 bits (491), Expect = 9.680e-56
Identity = 97/149 (65.10%), Postives = 115/149 (77.18%), Query Frame = 1
Query:  493 RLVEAHYRCSLQCDQAQLGNMYAVLSRRRGRVTNEDLVEGTQLFLLDALLPVAESFGFAGELFKRTSGGGTTPQLSFSHWEVVDVDPFWRPLTEEEREDEGEGSHL----NATNVARRHIDAVRRRKGLATADKIVMAAEKQRTLTRNK 927
            RL+E  YRC LQCDQAQLGN+YA+LS+RRG V ++DLVEGT+LFL+ ALLPV ES GF+ EL  RTSG  TTPQLSFSHW+ ++V PFWRP TE+ERE+ GE          TN+ARRHID VRRRKGL   +KIV+ AEKQRTL R +
Sbjct:   10 RLIEGFYRCDLQCDQAQLGNLYALLSKRRGIVLDDDLVEGTELFLITALLPVVESLGFSSELLGRTSGAATTPQLSFSHWDAIEVSPFWRPTTEDEREEMGESYSTYDQDRLTNLARRHIDNVRRRKGLLVEEKIVVDAEKQRTLGRAR 158          
BLAST of mRNA_P-wetherbeei_contig6728.1.5 vs. uniprot
Match: W7U9X5_9STRA (Elongation factor ef-2 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U9X5_9STRA)

HSP 1 Score: 210 bits (535), Expect = 5.360e-55
Identity = 133/314 (42.36%), Postives = 174/314 (55.41%), Query Frame = 1
Query:   52 WRAIGSGATAGFQLASVAGPLAGEEMYGVIFVVESVEITASCVGLEEIAAGAGAXXXXASSGSVGAPPSSSAEFDAAAVVGEVATAAAGDVVTDVAAAVAPRHAASPAVAGGLRQRRPVHPQFGPLSGQIISAAKSACRAAFLCCPARLVEAHYRCSLQCDQAQLGNMYAVLSRRRGRVTNEDLVEGTQLFLLDALLPVAESFGFAGELFKRTSGGGTTPQLSFSHWEVVDVDPFWRPLTEEEREDEGE--GSHLNATNVARRHIDAVRRRKGLATADKIVMAAEKQRTLTRNK*QQSAFCCCPLVVQFCRGVS 987
            W ++ S    GFQ+A+ +GPLA E+MYGV F +E +E   S    +E                   P  S  + +A                                    L  R       G L+GQ+++  K+ACRAAFL  P RLVEA + C LQCD+ QLG +Y VLS+RRGRV  ED++EGT LF++ ALLPVAESFGFA EL K+TSG  T+PQL FSHWE ++V+PFWRP  E++RE+ GE  GS  N   +ARR+ID  RRRKGL   +K+V+ AEKQRTL+R          C  V++  R V+
Sbjct:  887 WPSLQSSLLVGFQMATSSGPLAEEQMYGVGFAIEKLEFLLSPSDFKETLRDGNEERSCL-------PRLSREDLEA-----------------------------------WLSSR------LGSLTGQVMTLCKTACRAAFLSSPVRLVEAFFECDLQCDRLQLGRLYGVLSKRRGRVIREDILEGTDLFMIKALLPVAESFGFATELLKKTSGAATSPQLFFSHWERMEVNPFWRPQNEDDREEFGETFGSDFN---IARRYIDETRRRKGLQIGEKLVLYAEKQRTLSRKNWGLERETLCYFVLKKTRVVA 1149          
BLAST of mRNA_P-wetherbeei_contig6728.1.5 vs. uniprot
Match: A0A7S2RBI4_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RBI4_9STRA)

HSP 1 Score: 191 bits (486), Expect = 5.800e-55
Identity = 101/160 (63.12%), Postives = 122/160 (76.25%), Query Frame = 1
Query:  466 RAAFLCCP-ARLVEAHYRCSLQCDQAQLGNMYAVLSRRRGRVTNEDLVEGTQLFLLDALLPVAESFGFAGELFKRTSGGGTTPQLSFSHWEVVDVDPFWRPLTEEEREDEGEGSHLN-----ATNVARRHIDAVRRRKGLATADKIVMAAEKQRTLTRNK 927
            RA  L  P ARLVE   +C LQC+Q QLGN+YA+LS+RRG V +ED++EGT+LFL+ A +PV ES GF+ EL  +TSG  T PQLSFSHWE + VDPFWRP TE+ERE+ GE S++       TN+ARR+IDAVRRRKGL   +KIV AAEKQRTLTRNK
Sbjct:    3 RACLLSSPSARLVEGFVQCDLQCEQDQLGNLYALLSKRRGTVVDEDIIEGTELFLITAQIPVVESIGFSQELLDKTSGAATAPQLSFSHWESMSVDPFWRPTTEDEREEMGE-SYMTYETDRETNIARRNIDAVRRRKGLMVEEKIVAAAEKQRTLTRNK 161          
BLAST of mRNA_P-wetherbeei_contig6728.1.5 vs. uniprot
Match: A0A7S2G103_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2G103_9STRA)

HSP 1 Score: 188 bits (478), Expect = 2.650e-53
Identity = 99/166 (59.64%), Postives = 121/166 (72.89%), Query Frame = 1
Query:  436 QIISAAKSACRAAFLCCPARLVEAHYRCSLQCDQAQLGNMYAVLSRRRGRVTNEDLVEGTQLFLLDALLPVAESFGFAGELFKRTSGGGTTPQLSFSHWEVVDVDPFWRPLTEEEREDEGEGSHL--NATNVARRHIDAVRRRKGLATADKIVMAAEKQRTLTRNK 927
            ++  A K ACRAA L    R+VE   RC LQC+ +QLGN+YA L++ RG V  ED+VEGT+LF + ALLPV E+ GF+  L K+TSG  TTPQLS SHWE ++ DPFWRP T EERE+EGE   +  N  NVAR+ IDAVRRRKGL   +KIV+AAEKQRTL+R K
Sbjct:   31 ELSKAMKLACRAALLSGDVRVVEKKLRCDLQCNSSQLGNLYATLAKMRGEVIKEDIVEGTELFSITALLPVTEAQGFSAALLKKTSGAATTPQLSLSHWETLERDPFWRPTTAEEREEEGEEHTIVGNDHNVARKLIDAVRRRKGLPVEEKIVVAAEKQRTLSRAK 196          
BLAST of mRNA_P-wetherbeei_contig6728.1.5 vs. uniprot
Match: A0A7S3HQ28_9STRA (Hypothetical protein n=4 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HQ28_9STRA)

HSP 1 Score: 202 bits (515), Expect = 2.230e-52
Identity = 130/295 (44.07%), Postives = 169/295 (57.29%), Query Frame = 1
Query:   49 VWRAIGSGATAGFQLASVAGPLAGEEMYGVIFVVESVEITASCVGLEEIAAGAGAXXXXASSGSVGAPPSSSAEFDAAAVVGEVATAAAGDVVTDVAAAVAPRHAASPAVAGGLRQRRPVHPQFGPLSGQIISAAKSACRAAFLCCPARLVEAHYRCSLQCDQAQLGNMYAVLSRRRGRVTNEDLVEGTQLFLLDALLPVAESFGFAGELFKRTSGGGTTPQLSFSHWEVVDVDPFWRPLTEEEREDEGEGSHLNAT--NVARRHIDAVRRRKGLATADKIVMAAEKQRTLTRNK 927
            +W  + S  TA F+LA  +GPL  E ++GV FV+E VE+ A+                     SV  P   +  +++A             V  D+ A+    ++ + +VA               L+GQ+IS  K A     L  P R+VE  Y+C LQCDQ+QLGN+YAVLS+RRG VTNED++EGT LFLL A LPV  SFGFA +L K+TSG GT PQLSFSHW  +D DPFWRP TE+E E+ GE   +     N+ R  IDAVR+RKGL   +KIV +AEKQRTL + K
Sbjct:  902 LWARLHSACTAAFRLAVESGPLMREPLHGVGFVIEHVEVNAAVCN------------------SVLTPQERAMVYESA-------------VERDLTASAMSINSEAESVASSSXXXSS---SASILTGQLISELKDALHVCMLSLPVRIVEPVYKCDLQCDQSQLGNLYAVLSQRRGSVTNEDIIEGTSLFLLSADLPVHSSFGFAQQLLKKTSGLGTAPQLSFSHWSRIDTDPFWRPTTEDELEEYGEQGLMTGAERNLPRGIIDAVRKRKGLPIEEKIVKSAEKQRTLNKKK 1162          
BLAST of mRNA_P-wetherbeei_contig6728.1.5 vs. uniprot
Match: A0A1V9YD84_9STRA (Elongation factor G n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YD84_9STRA)

HSP 1 Score: 194 bits (492), Expect = 1.720e-49
Identity = 100/170 (58.82%), Postives = 124/170 (72.94%), Query Frame = 1
Query:  418 FGPLSGQIISAAKSACRAAFLCCPARLVEAHYRCSLQCDQAQLGNMYAVLSRRRGRVTNEDLVEGTQLFLLDALLPVAESFGFAGELFKRTSGGGTTPQLSFSHWEVVDVDPFWRPLTEEEREDEGEGSHLNATNVARRHIDAVRRRKGLATADKIVMAAEKQRTLTRNK 927
            +GPLSGQ+IS  KS CR+AFL  P RLVEA Y+CS+QC   QLG +Y+V +RRR RV +E+L +G+ LF ++A LPV ESFGFA EL K TSG  + PQL F HW  +D DPF++P TEEERED GE   +   N  R+ I+ VR+RKGLA  +KIV+ AEKQRTL RNK
Sbjct:  830 YGPLSGQVISTMKSGCRSAFLHQPVRLVEAMYKCSVQCQSEQLGKLYSVFARRRARVVSEELTDGSALFSVEAYLPVVESFGFATELLKSTSGNASNPQLLFDHWATMDEDPFFQPTTEEEREDFGET--IAEHNAVRKLIEGVRKRKGLAREEKIVVHAEKQRTLGRNK 997          
BLAST of mRNA_P-wetherbeei_contig6728.1.5 vs. uniprot
Match: A0A8K1FMY3_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FMY3_PYTOL)

HSP 1 Score: 190 bits (482), Expect = 4.030e-48
Identity = 98/171 (57.31%), Postives = 129/171 (75.44%), Query Frame = 1
Query:  415 QFGPLSGQIISAAKSACRAAFLCCPARLVEAHYRCSLQCDQAQLGNMYAVLSRRRGRVTNEDLVEGTQLFLLDALLPVAESFGFAGELFKRTSGGGTTPQLSFSHWEVVDVDPFWRPLTEEEREDEGEGSHLNATNVARRHIDAVRRRKGLATADKIVMAAEKQRTLTRNK 927
            +FGPLSGQ+IS+ +SACRAAF+  P RLVEA Y C++QC   QLG +Y V ++RRG V +E+L +G+ LF + A LPV ESFGFA EL  +TSG  + PQL FSHW+++D+DPF++P TEEERED GE   +   N  R++I+AVR+RKGLA  +KIV+ AEKQRTL R +
Sbjct:  880 KFGPLSGQVISSMRSACRAAFVKQPTRLVEAVYECTVQCLSEQLGKLYTVFAKRRGDVFSEELSDGSALFTIKAHLPVVESFGFATELLIQTSGAASNPQLVFSHWQLMDMDPFFQPQTEEEREDFGE--RIYEHNYVRKYIEAVRKRKGLARDEKIVVHAEKQRTLARKR 1048          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6728.1.5 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L6M4_9PHAE4.660e-8456.69EFG_C domain-containing protein n=2 Tax=Ectocarpus... [more]
A0A7S3XN80_HETAK2.440e-7271.93Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S3XMW0_HETAK7.310e-7248.37Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2AZY7_9STRA9.680e-5665.10Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
W7U9X5_9STRA5.360e-5542.36Elongation factor ef-2 n=1 Tax=Nannochloropsis gad... [more]
A0A7S2RBI4_9STRA5.800e-5563.13Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2G103_9STRA2.650e-5359.64Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S3HQ28_9STRA2.230e-5244.07Hypothetical protein n=4 Tax=Spumella elongata Tax... [more]
A0A1V9YD84_9STRA1.720e-4958.82Elongation factor G n=1 Tax=Achlya hypogyna TaxID=... [more]
A0A8K1FMY3_PYTOL4.030e-4857.31Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6728contigP-wetherbeei_contig6728:886..3048 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7G3I9
Preferred nameEFTUD1
PFAMsEFG_C,EFG_II,GTP_EFTU,GTP_EFTU_D2
Model size1619
Max annot lvl2759|Eukaryota
KEGG koko:K03234,ko:K14536
KEGG Pathwayko03008,ko04152,ko04921,map03008,map04152,map04921
Hectar predicted targeting categoryother localisation
GOsGO:0000166,GO:0001882,GO:0001883,GO:0003674,GO:0003676,GO:0003723,GO:0003746,GO:0003824,GO:0003924,GO:0005488,GO:0005515,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006163,GO:0006412,GO:0006414,GO:0006417,GO:0006448,GO:0006518,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006996,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009116,GO:0009117,GO:0009119,GO:0009141,GO:0009144,GO:0009150,GO:0009199,GO:0009205,GO:0009259,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010608,GO:0010628,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017076,GO:0017111,GO:0019001,GO:0019222,GO:0019538,GO:0019637,GO:0019693,GO:0022607,GO:0022613,GO:0022618,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0032268,GO:0032270,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0034248,GO:0034250,GO:0034622,GO:0034641,GO:0034645,GO:0035639,GO:0036094,GO:0042254,GO:0042255,GO:0042256,GO:0042278,GO:0042802,GO:0043021,GO:0043022,GO:0043043,GO:0043167,GO:0043168,GO:0043170,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0044877,GO:0045727,GO:0045901,GO:0046039,GO:0046128,GO:0046483,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0055086,GO:0060255,GO:0065003,GO:0065007,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0072521,GO:0080090,GO:0097159,GO:0097367,GO:1901068,GO:1901135,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1990145,GO:2000112
Exons3
Evalue4.84e-82
EggNOG OGsCOG0480@1|root,KOG0467@2759|Eukaryota
DescriptionGTPase activity
Cds size804
COG categoryJ
BRITEko00000,ko00001,ko01000,ko03009,ko03012,ko04147
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186932.700244-UTR-P-wetherbeei_contig6728:885..10111683186932.700244-UTR-P-wetherbeei_contig6728:885..1011Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6728 886..1011 +
1683186932.74127-UTR-P-wetherbeei_contig6728:2080..26201683186932.74127-UTR-P-wetherbeei_contig6728:2080..2620Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6728 2081..2620 +
1683186932.75165-UTR-P-wetherbeei_contig6728:2899..30481683186932.75165-UTR-P-wetherbeei_contig6728:2899..3048Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6728 2900..3048 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186932.7148352-CDS-P-wetherbeei_contig6728:1011..16201683186932.7148352-CDS-P-wetherbeei_contig6728:1011..1620Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6728 1012..1620 +
1683186932.729418-CDS-P-wetherbeei_contig6728:1885..20801683186932.729418-CDS-P-wetherbeei_contig6728:1885..2080Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6728 1886..2080 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6728.1.5prot_P-wetherbeei_contig6728.1.5Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6728 1012..2080 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6728.1.5

>prot_P-wetherbeei_contig6728.1.5 ID=prot_P-wetherbeei_contig6728.1.5|Name=mRNA_P-wetherbeei_contig6728.1.5|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=268bp
MYGVIFVVESVEITASCVGLEEIAAGAGAGASAASSGSVGAPPSSSAEFD
AAAVVGEVATAAAGDVVTDVAAAVAPRHAASPAVAGGLRQRRPVHPQFGP
LSGQIISAAKSACRAAFLCCPARLVEAHYRCSLQCDQAQLGNMYAVLSRR
RGRVTNEDLVEGTQLFLLDALLPVAESFGFAGELFKRTSGGGTTPQLSFS
HWEVVDVDPFWRPLTEEEREDEGEGSHLNATNVARRHIDAVRRRKGLATA
DKIVMAAEKQRTLTRNK*
back to top

mRNA from alignment at P-wetherbeei_contig6728:886..3048+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6728.1.5 ID=mRNA_P-wetherbeei_contig6728.1.5|Name=mRNA_P-wetherbeei_contig6728.1.5|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2163bp|location=Sequence derived from alignment at P-wetherbeei_contig6728:886..3048+ (Phaeothamnion wetherbeei SAG_119_79)
TCGCCCGCCGGAGTGACCGTGACGGCCGACGAAGAGGTGCAAGCAATCGT GTGGCGCGCCATTGGCAGTGGTGCCACGGCAGGCTTCCAGCTCGCCTCGG TGGCGGGGCCGCTCGCCGGCGAGGAGATGTACGGCGTCATTTTCGTCGTA GAGAGTGTGGAGATTACGGCGTCGTGCGTTGGGCTCGAAGAAATCGCTGC TGGCGCCGGAGCTGGTGCTAGCGCTGCTAGCAGTGGTTCTGTTGGAGCTC CGCCGTCATCTTCGGCCGAATTCGACGCTGCTGCTGTAGTAGGCGAGGTG GCGACGGCTGCGGCGGGGGACGTGGTAACGGATGTGGCAGCGGCAGTAGC GCCGAGACATGCGGCAAGCCCCGCCGTGGCCGGGGGGCTGCGCCAGCGGC GGCCCGTGCACCCGCAGTTCGGGCCCCTTTCGGGGCAGATCATATCGGCG GCCAAATCGGCGTGCCGTGCCGCGTTCCTGTGTTGCCCCGCGCGGCTGGT CGAGGCGCACTACCGCTGCTCGCTGCAGTGCGACCAGGCGCAGCTCGGCA ACATGTACGCCGTTCTGAGCCGTCGCCGCGGCCGCGTCACTAACGAGGAT CTGGTGGAGGGCACGCAGCTCTTCTTGCTGGACGCGTTGCTGCCGGTCGC CGAAAGTTTTGGCTTTGCGGGAGAGCTGTTCAAGAGGACGTCCGGCGGGG GAACAACGCCGCAGCTGTCTTTCTCGCACTGGGAGGTGGGTCGCGTTGGG CGGTGGAATGGAAAGGGAGGGGTATGAAGCGGGGAAGGATCTGCTGCAGC AGTTCTCTTTTCCTGTTCTCTACCCCTTTCTGCCTCCCTCGGTCGTCTTT CTCCATCTTTTTTCTCTCCTTTCCTTTCCCTCCGCAATCAGCGCCCCCTT CTTCTTTTTGACGCCGATCGATGGACCAGACCGCAAACGAAAGAGCACCT TTCTTCTTTTTTCTTTTTGGTTCTCTGCTGTGTCTGCTGTCTGCGGGCAG GTGGTGGACGTGGATCCGTTCTGGCGACCGCTGACGGAGGAGGAGCGCGA GGACGAGGGAGAGGGCAGCCACCTGAACGCCACCAACGTCGCCCGCCGAC ACATCGACGCCGTGCGGCGCCGCAAGGGGCTCGCCACGGCTGACAAGATT GTTATGGCGGCCGAGAAGCAGCGCACGCTCACCCGCAACAAGTAGCAACA GTCCGCTTTTTGCTGTTGTCCTCTGGTGGTTCAATTCTGTCGTGGGGTCA GTGATGGGTGGCGGGTGAAAGGGTAAGGAGGGAAGACGGCGACTGTTCGG GTTGTGGTATCAGAGGCAGAGTATGCAAAGCGGGCGGAGAGCGGCGGCCG GCATCGGTGTGTGCCACTGAAAAGCAGGAAGAAGCCTCCTATCTCGTCCC CCAAATCTGGCTGCTCCCTCTTCCTGGTGGTTACATTTTTGGGCGTAACG GACAAACCGCCACCAGGATATAGAAATATCACAAACCAAAAAATGCAGAT ACTTGATCGCTGCCGCCGTGATAGACGAGCCGCAAGGCGGAATGGTGCCG CTTCATGGCTTTCCGCAGCAGTATGGCTGGTTTTGGGGCCCCTGCGATGC CTCGCCTGCTACATCAATGGCGTCGACATTGGCGTTTGCGATAGCAACAT TGAGACCGACTATGAGTACCGCACGCTGCAAATGCCGTTTTGTGGTGCGG TCGTCAGTTATACCGCCTGCGTGCCGCTGTACAACGTGAGGGCTCTTTGA TACATTCTTCGCGTTCGCTCACAACATGCCAACGAACACGCTTTGAAAAC AATATGAATGGAAAATTGTGGGGGCTGATGGCGAGGTGGTACCACCATCT TCTGAATCCAATCCATACGTACAACGATCAGCCAGCAGCTTTCATTCAAT CATAGCACTGACGAAGCCCTCCTTTCTTACCGCCTTCACTTCTTTCTGGC CGCGCTGCGGCCTCCCCCCTGGAACGTTTCTGCCTCTGCCCCCTTTCATC TTTTCCCCTCTCAGCCTTTGTCGCCGTCCCGAGACCACCCCCTCGGGCGG TGGTACAACAACACGATATCCATCAAGGACAGCTGGGTGGAGCAGCGATA CGACGAGGTCATCGCCACACGGATGGCCATCGAAAAGAACTCCACCCTCC AAAAGAAAGGTGC
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig6728:886..3048+

>mRNA_P-wetherbeei_contig6728.1.5 ID=mRNA_P-wetherbeei_contig6728.1.5|Name=mRNA_P-wetherbeei_contig6728.1.5|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=804bp|location=Sequence derived from alignment at P-wetherbeei_contig6728:886..3048+ (Phaeothamnion wetherbeei SAG_119_79)
ATGTACGGCGTCATTTTCGTCGTAGAGAGTGTGGAGATTACGGCGTCGTG
CGTTGGGCTCGAAGAAATCGCTGCTGGCGCCGGAGCTGGTGCTAGCGCTG
CTAGCAGTGGTTCTGTTGGAGCTCCGCCGTCATCTTCGGCCGAATTCGAC
GCTGCTGCTGTAGTAGGCGAGGTGGCGACGGCTGCGGCGGGGGACGTGGT
AACGGATGTGGCAGCGGCAGTAGCGCCGAGACATGCGGCAAGCCCCGCCG
TGGCCGGGGGGCTGCGCCAGCGGCGGCCCGTGCACCCGCAGTTCGGGCCC
CTTTCGGGGCAGATCATATCGGCGGCCAAATCGGCGTGCCGTGCCGCGTT
CCTGTGTTGCCCCGCGCGGCTGGTCGAGGCGCACTACCGCTGCTCGCTGC
AGTGCGACCAGGCGCAGCTCGGCAACATGTACGCCGTTCTGAGCCGTCGC
CGCGGCCGCGTCACTAACGAGGATCTGGTGGAGGGCACGCAGCTCTTCTT
GCTGGACGCGTTGCTGCCGGTCGCCGAAAGTTTTGGCTTTGCGGGAGAGC
TGTTCAAGAGGACGTCCGGCGGGGGAACAACGCCGCAGCTGTCTTTCTCG
CACTGGGAGGTGGTGGACGTGGATCCGTTCTGGCGACCGCTGACGGAGGA
GGAGCGCGAGGACGAGGGAGAGGGCAGCCACCTGAACGCCACCAACGTCG
CCCGCCGACACATCGACGCCGTGCGGCGCCGCAAGGGGCTCGCCACGGCT
GACAAGATTGTTATGGCGGCCGAGAAGCAGCGCACGCTCACCCGCAACAA
GTAG
back to top