mRNA_P-wetherbeei_contig6725.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6725.3.1
Unique NamemRNA_P-wetherbeei_contig6725.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig6725.3.1 vs. uniprot
Match: A0A6H5L249_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L249_9PHAE)

HSP 1 Score: 150 bits (380), Expect = 3.250e-39
Identity = 95/207 (45.89%), Postives = 118/207 (57.00%), Query Frame = 1
Query:    1 ETTLEAAGALFRQYSSWRLHTKYYSAPLVFWKQ-DTKPPLAASEEGASNAASEEALAAVEGIVVTFDLSDKDSFDEVRPWGLFALERESCTLRLCVGTKLDLLPDAGGDEADGGRDADA------KGATAAXXXXXXXXXATSALLEGRRRAYLDWCLDHGFEYIEADCTDAAAGGGRREKEGVPRVLEAFQSNMWTNMQYRSGLRP 600
            +  LE A A F  + +  + TKYY+A + FW+Q     P+ A         S E L  +EGI+V FDL  +  FDE   W     +RE C  R+CVG+KLDLLP   GD A  G  A+        G      XXXXXXX     L  RRR  L WCLDHGFEY+EADC D+  GG  REKEGVPR++EA QSN+WT+M++ S  RP
Sbjct:   61 QVLLEQANAKFDVFPA-SITTKYYNAQISFWRQAQAAVPILALR-------SAEQLEGLEGIIVLFDLRQESGFDEASQWAALMEDREECAFRVCVGSKLDLLPQDPGDGAGFGTGAETTLEPAESGLEGDAAXXXXXXXXXXEGLRERRRRCLGWCLDHGFEYVEADCRDSNTGGELREKEGVPRIVEALQSNVWTDMEFLSSNRP 259          
BLAST of mRNA_P-wetherbeei_contig6725.3.1 vs. uniprot
Match: D7FHG9_ECTSI (IRC6, uncharacterized protein interacting with AP adaptor complexes n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHG9_ECTSI)

HSP 1 Score: 143 bits (361), Expect = 6.950e-37
Identity = 80/177 (45.20%), Postives = 98/177 (55.37%), Query Frame = 1
Query:   73 SAPLVFWKQ-DTKPPLAASEEGASNAASEEALAAVEGIVVTFDLSDKDSFDEVRPWGLFALERESCTLRLCVGTKLDLLPDAGGDEADGGRDADAKGATAAXXXXXXXXXATSALLEGRRRAYLDWCLDHGFEYIEADCTDAAAGGGRREKEGVPRVLEAFQSNMWTNMQYRSGLRP 600
            S  + FW+Q     P+ A         S E L  +EGI+V FDL  + S DEV  W     +RE C  R+CVG+KLDLLP+  GD    G  A+     A          A   L E R R  L WCLDHGFEY+EADC D+  GG  REKEGVPR++EA QSN+WT M++ S  RP
Sbjct:    4 SLTISFWRQAQAAVPVLALR-------SAEQLEGLEGIIVVFDLRQESSLDEVAQWAALVEDREECAFRVCVGSKLDLLPEDPGDGTGFGTGAETAPEPAESGLEGGDAAAAEGLQERRSRC-LGWCLDHGFEYVEADCRDSYTGGELREKEGVPRIVEALQSNVWTGMEFLSSNRP 172          
BLAST of mRNA_P-wetherbeei_contig6725.3.1 vs. uniprot
Match: A0A835Z725_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z725_9STRA)

HSP 1 Score: 142 bits (357), Expect = 1.360e-36
Identity = 82/193 (42.49%), Postives = 106/193 (54.92%), Query Frame = 1
Query:    1 ETTLEAAGALFRQYSSWRLHTKYYSAPLVFWKQDTKPPLAA-SEEGASNAASEEALAAVEGIVVTFDLSDKDSFDEVRPWGLFALERESCTLRLCVGTKLDLLPDAGGDEADGGRDADAKGATAAXXXXXXXXXATSALLEGRRRAYLDWCLDHGFEYIEADCTDAAAGGGRREKEGVPRVLEAFQSNMWTNM 576
            +  LEAAGA F Q++ W LHTKYYS  + FW+Q   P ++A  E+GA +AA+ E    VEGI+  FD++  D+F+ VR WG F  ER++  LRL V +K   L                               A    +E RR  Y+ WCLDHGFEYIEA+C     GG  REKEGVPRV+EA QS  W ++
Sbjct:   21 DVLLEAAGARFAQHA-WPLHTKYYSTQIRFWEQRELPSISAVHEDGAIHAAAGEH--GVEGIIAVFDVTQDDAFESVREWGTFCDERDALALRLLVASKASHL----------------------RKLQMADLFADGDEMERRREVYIHWCLDHGFEYIEANCCRPDLGGDTREKEGVPRVVEALQSTAWASI 188          
BLAST of mRNA_P-wetherbeei_contig6725.3.1 vs. uniprot
Match: UPI001C276E4B (uncharacterized protein LOC121804817 isoform X1 n=2 Tax=Salvia splendens TaxID=180675 RepID=UPI001C276E4B)

HSP 1 Score: 63.2 bits (152), Expect = 1.440e-8
Identity = 51/204 (25.00%), Postives = 87/204 (42.65%), Query Frame = 1
Query:   43 SSWRLHTKYYSAPLVFWKQDTKPPLAASEEGASNAASEEALAAVEGIVVTFDLSDKDSFDEVRPWGLFALERESCTLRLCVGTKLDLLPD-------------AGGDEADGGRDADAKGATAAXXXXXXXXXATSALLEGRRRAYLDWCLDHGFEYIEADCTDA------AAGGGRREKEGVPRVLEAFQSNMWTNMQYRSGLR 597
            + W ++TKYY+A +  W  +    L        + AS   +  +  +V+ FD SD  +   ++ W +   + +   + LCVG K+DLLPD              G        D    G +             S    G +R+ ++WCL+H  EY+EA  ++A      +  G   + +G+ R+  A  ++MW  M  +SG R
Sbjct:   47 NGWTINTKYYTADVTVWTANLSNEL--------SIASFPDVNQIVALVMVFDTSDLPTLVALKEW-VSRTDIQKFDILLCVGNKVDLLPDHPSHVEYKRRLMKLGESSVRSNVDFSDYGISETEGSSLLGNEEPSL---GFKRSCIEWCLEHNIEYVEACASNAEFDQCLSVDG---DSQGIDRLYGALSAHMWPGMLLKSGDR 235          
BLAST of mRNA_P-wetherbeei_contig6725.3.1 vs. uniprot
Match: A0A2G2ZLY6_CAPAN (uncharacterized protein LOC107868252 n=4 Tax=Capsicum TaxID=4071 RepID=A0A2G2ZLY6_CAPAN)

HSP 1 Score: 62.0 bits (149), Expect = 7.160e-8
Identity = 57/199 (28.64%), Postives = 89/199 (44.72%), Query Frame = 1
Query:   49 WRLHTKYYSAPLVFWKQDTKPPLAASEEGASNAASEEALAAVEGIVVTFDLSDKDSFDEVRPWGLFALERESCTLRLCVGTKLDLLPDAGGDEADGG------RDADAKGATAAXXXXXXXXXATSALLEGR------RRAYLDWCLDHGFEYIEADCTDA------AAGGGRREKEGVPRVLEAFQSNMWTNMQYRSG 591
            W ++TKYY+A +  W       +A   E  S  A   A   +  +V+ FD+SD  SF  ++ + +   +     + LC+G K+DLLP   G  A         + AD+ G               S+LL         +R+YLDWCL+H  EY+EA  ++A      +  G   + +G  R+  A  + MW  M  +SG
Sbjct:   59 WTINTKYYNADVSVW-------MAHLHEDFSIGALP-AYDQLVALVMVFDVSDPSSFAALKDF-VSRTDILKFEILLCIGNKVDLLP---GHSAHVEYRRHLLKSADSSGIPYTELDSGISETEGSSLLGDDDSSLDVKRSYLDWCLEHNIEYVEACASNADFDKCLSVDG---DSQGAERLFGALSAYMWPGMILKSG 242          
BLAST of mRNA_P-wetherbeei_contig6725.3.1 vs. uniprot
Match: M1BLV4_SOLTU (Uncharacterized protein n=8 Tax=Solanoideae TaxID=424551 RepID=M1BLV4_SOLTU)

HSP 1 Score: 60.1 bits (144), Expect = 3.270e-7
Identity = 54/196 (27.55%), Postives = 88/196 (44.90%), Query Frame = 1
Query:   49 WRLHTKYYSAPLVFWKQDTKPPLAASEEGASNAASEEALAAVEGIVVTFDLSDKDSFDEVRPWGLFALERESCTLRLCVGTKLDLLPDAGGDEADGGR---DADAKGATAAXXXXXXXXXATSALLEG------RRRAYLDWCLDHGFEYIEADCTDA------AAGGGRREKEGVPRVLEAFQSNMWTNMQYRSG 591
            W ++TKYY+A +  W       +A   E  S  A   A   +  +V+ FD++D  SF  ++ + +   +     + LC+G K+DLLP          R    AD+ G+              S+LL         +R+YL+WCL+H  EY+EA  ++A      +  G   + +G  R+  A  + MW  M  +SG
Sbjct:   60 WTINTKYYNADVSVW-------MAHLHEDFSIGALP-AYDQLVALVMVFDVTDLSSFVTLKDF-VSRTDILKFEILLCIGNKVDLLPGHSAHVEYRRRLLKSADSSGSPYTEMDSGISETEGSSLLGDDDDSFDTKRSYLEWCLEHSIEYVEACASNAEFDKCLSVDG---DSQGAERLFGALSAYMWPGMILKSG 243          
BLAST of mRNA_P-wetherbeei_contig6725.3.1 vs. uniprot
Match: A0A7S2CNU5_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CNU5_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 3.600e-7
Identity = 24/57 (42.11%), Postives = 37/57 (64.91%), Query Frame = 1
Query:  412 LLEGRRRAYLDWCLDHGFEYIEA-DCTDAAAGGGRREKEGVPRVLEAFQSNMWTNMQ 579
            L +   + Y+ W LD GFE+++  D T    G  +REKEG PR++EA ++ MW+N+Q
Sbjct:   62 LTDTAHQQYILWALDEGFEFVDTVDMTSCTLGHDKREKEGFPRIVEAAEATMWSNLQ 118          
BLAST of mRNA_P-wetherbeei_contig6725.3.1 vs. uniprot
Match: A0A7S3H6C6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H6C6_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 5.240e-7
Identity = 27/61 (44.26%), Postives = 37/61 (60.66%), Query Frame = 1
Query:  409 ALLEGR----RRAYLDWCLDHGFEYIEADCTDAAAGGGRREKEGVPRVLEAFQSNMWTNMQ 579
            AL EG     R +Y  W L++ FEY+E +  D       REK G+PR++EA +SNMW+ MQ
Sbjct:   24 ALTEGSEVDLRPSYEAWALENSFEYVEINVLDPVKDFQEREKSGLPRLMEALESNMWSTMQ 84          
BLAST of mRNA_P-wetherbeei_contig6725.3.1 vs. uniprot
Match: A0A7S2A3A3_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2A3A3_TRICV)

HSP 1 Score: 56.6 bits (135), Expect = 1.640e-6
Identity = 25/53 (47.17%), Postives = 37/53 (69.81%), Query Frame = 1
Query:  445 WCLDHGFEYIEADCTDAA--AGGGRREKEGVPRVLEAFQSNMWT--NMQYRSG 591
            WCLD G+EY+EAD ++    +G   REKEG  R++EA +S +W+  +MQ R+G
Sbjct:    9 WCLDRGYEYVEADLSEKGIRSGHDEREKEGFARIVEAVESTVWSCASMQPRAG 61          
BLAST of mRNA_P-wetherbeei_contig6725.3.1 vs. uniprot
Match: A0A7J7Q817_9CHLO (Alpha and gamma adaptin binding protein p34-domain-containing protein n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7Q817_9CHLO)

HSP 1 Score: 57.8 bits (138), Expect = 1.990e-6
Identity = 53/183 (28.96%), Postives = 75/183 (40.98%), Query Frame = 1
Query:   52 RLHTKYYSAPLVF-----WKQDTKPPLAASEEGASNAASEEALAAVEGIVVTFDLSDKDSFDEVRPWGLFALERESCTLRLCVGTKLDLLPDAGGDEADGGRDADAKGATAAXXXXXXXXXATSALLEGRRRAYLDWCLDHGFEYIEADCTDAAAGGGRR---EKEGVPRVLEAFQSNMWTNM 576
            RL TKYY+A ++       +QD +  L A            A   ++ +V+ FD S + SF   R W   A E +S  ++L V  K D L      +    R + A    A          A S            WC+D GFEY+EA     A         E++GV RVL A Q+++W  M
Sbjct:   57 RLDTKYYTADVLVRALGTHQQDKQQQLPAH-----------AWEQLQALVLVFDASSEASFVSARSWA-DARETDSIEVKLLVANKADRL------QQQSTRASSAAAGAAGSCRAPWLHDAVS------------WCVDKGFEYVEAAAGKPAVDAALHLEGEQQGVVRVLAALQAHLWPGM 209          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6725.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
A0A6H5L249_9PHAE3.250e-3945.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FHG9_ECTSI6.950e-3745.20IRC6, uncharacterized protein interacting with AP ... [more]
A0A835Z725_9STRA1.360e-3642.49Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
UPI001C276E4B1.440e-825.00uncharacterized protein LOC121804817 isoform X1 n=... [more]
A0A2G2ZLY6_CAPAN7.160e-828.64uncharacterized protein LOC107868252 n=4 Tax=Capsi... [more]
M1BLV4_SOLTU3.270e-727.55Uncharacterized protein n=8 Tax=Solanoideae TaxID=... [more]
A0A7S2CNU5_9STRA3.600e-742.11Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S3H6C6_9STRA5.240e-744.26Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A7S2A3A3_TRICV1.640e-647.17Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A7J7Q817_9CHLO1.990e-628.96Alpha and gamma adaptin binding protein p34-domain... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6725contigP-wetherbeei_contig6725:2610..3314 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog3218.PP1S26_125V6.1
PFAMsAdaptin_binding,Ras
Model size600
Max annot lvl35493|Streptophyta
Hectar predicted targeting categoryother localisation
GOsGO:0000011,GO:0003674,GO:0003824,GO:0003924,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005769,GO:0005770,GO:0005886,GO:0006605,GO:0006623,GO:0006810,GO:0006886,GO:0006892,GO:0006895,GO:0006897,GO:0006914,GO:0006996,GO:0007032,GO:0007033,GO:0007034,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009987,GO:0010256,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0016050,GO:0016192,GO:0016197,GO:0016236,GO:0016462,GO:0016482,GO:0016787,GO:0016817,GO:0016818,GO:0017111,GO:0022411,GO:0022607,GO:0030139,GO:0031410,GO:0031982,GO:0032509,GO:0032511,GO:0033036,GO:0033365,GO:0034613,GO:0036010,GO:0036257,GO:0036258,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0044085,GO:0044237,GO:0044248,GO:0044424,GO:0044444,GO:0044464,GO:0045184,GO:0045324,GO:0046907,GO:0048193,GO:0048308,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0061709,GO:0061912,GO:0061919,GO:0070727,GO:0070925,GO:0071702,GO:0071705,GO:0071840,GO:0071944,GO:0071985,GO:0072594,GO:0072665,GO:0072666,GO:0097708,GO:0098657,GO:1903008
Exons2
Evalue3.33e-12
EggNOG OGsKOG4273@1|root,KOG4273@2759|Eukaryota,37NND@33090|Viridiplantae,3G9M5@35493|Streptophyta
Ec32 ortholog descriptionIRC6, uncharacterised protein interacting with AP adaptor complexes
Ec32 orthologEc-25_002450.1
DescriptionAlpha and gamma adaptin binding protein p34
Cds size600
COG categoryJ
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186932.6522176-CDS-P-wetherbeei_contig6725:2609..29221683186932.6522176-CDS-P-wetherbeei_contig6725:2609..2922Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6725 2610..2922 +
1683186932.665409-CDS-P-wetherbeei_contig6725:3027..33141683186932.665409-CDS-P-wetherbeei_contig6725:3027..3314Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6725 3028..3314 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6725.3.1prot_P-wetherbeei_contig6725.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6725 2610..3314 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6725.3.1

>prot_P-wetherbeei_contig6725.3.1 ID=prot_P-wetherbeei_contig6725.3.1|Name=mRNA_P-wetherbeei_contig6725.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=200bp
ETTLEAAGALFRQYSSWRLHTKYYSAPLVFWKQDTKPPLAASEEGASNAA
SEEALAAVEGIVVTFDLSDKDSFDEVRPWGLFALERESCTLRLCVGTKLD
LLPDAGGDEADGGRDADAKGATAAAASARASSAATSALLEGRRRAYLDWC
LDHGFEYIEADCTDAAAGGGRREKEGVPRVLEAFQSNMWTNMQYRSGLRP
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mRNA from alignment at P-wetherbeei_contig6725:2610..3314+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6725.3.1 ID=mRNA_P-wetherbeei_contig6725.3.1|Name=mRNA_P-wetherbeei_contig6725.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=705bp|location=Sequence derived from alignment at P-wetherbeei_contig6725:2610..3314+ (Phaeothamnion wetherbeei SAG_119_79)
GAGACGACTCTTGAGGCTGCTGGGGCGCTCTTCCGGCAGTACTCCAGCTG GCGCCTTCACACTAAGTACTACTCGGCCCCGCTAGTCTTCTGGAAGCAGG ACACGAAACCTCCGCTTGCCGCATCCGAAGAGGGCGCCTCAAACGCTGCT TCGGAAGAGGCCCTCGCAGCCGTCGAAGGCATCGTGGTGACGTTCGACCT TTCCGACAAGGACAGCTTCGATGAAGTGCGCCCGTGGGGCCTGTTTGCGC TGGAGCGAGAGTCGTGCACCCTCCGGTTGTGCGTCGGCACAAAGCTCGAT CTGCTGCCTGATGGTCGCGACGACGAAGCTAGTGGAGATGGCGGTGGCGG CTGCGGTGGCGGCGGCGAAGCAGGCGGTGGCGGCGGCGGTGGCGGCGGCG AAGCAGGCGGCGGCGAAGCAGGCGGCGACGAAGCGGACGGCGGCAGAGAT GCGGATGCGAAGGGCGCAACGGCGGCGGCGGCATCGGCGCGGGCATCATC TGCGGCGACTTCGGCATTGCTGGAGGGGCGGCGACGGGCATACCTCGACT GGTGCCTCGACCACGGCTTCGAGTACATCGAGGCCGATTGCACCGACGCG GCGGCGGGCGGCGGGCGCCGCGAGAAGGAGGGCGTCCCACGGGTCCTCGA GGCGTTTCAGTCCAACATGTGGACCAATATGCAGTACCGCTCGGGGCTCC GGCCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6725:2610..3314+

>mRNA_P-wetherbeei_contig6725.3.1 ID=mRNA_P-wetherbeei_contig6725.3.1|Name=mRNA_P-wetherbeei_contig6725.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=600bp|location=Sequence derived from alignment at P-wetherbeei_contig6725:2610..3314+ (Phaeothamnion wetherbeei SAG_119_79)
GAGACGACTCTTGAGGCTGCTGGGGCGCTCTTCCGGCAGTACTCCAGCTG
GCGCCTTCACACTAAGTACTACTCGGCCCCGCTAGTCTTCTGGAAGCAGG
ACACGAAACCTCCGCTTGCCGCATCCGAAGAGGGCGCCTCAAACGCTGCT
TCGGAAGAGGCCCTCGCAGCCGTCGAAGGCATCGTGGTGACGTTCGACCT
TTCCGACAAGGACAGCTTCGATGAAGTGCGCCCGTGGGGCCTGTTTGCGC
TGGAGCGAGAGTCGTGCACCCTCCGGTTGTGCGTCGGCACAAAGCTCGAT
CTGCTGCCTGATGCAGGCGGCGACGAAGCGGACGGCGGCAGAGATGCGGA
TGCGAAGGGCGCAACGGCGGCGGCGGCATCGGCGCGGGCATCATCTGCGG
CGACTTCGGCATTGCTGGAGGGGCGGCGACGGGCATACCTCGACTGGTGC
CTCGACCACGGCTTCGAGTACATCGAGGCCGATTGCACCGACGCGGCGGC
GGGCGGCGGGCGCCGCGAGAAGGAGGGCGTCCCACGGGTCCTCGAGGCGT
TTCAGTCCAACATGTGGACCAATATGCAGTACCGCTCGGGGCTCCGGCCG
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