mRNA_P-wetherbeei_contig672.3.2 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig672.3.2
Unique NamemRNA_P-wetherbeei_contig672.3.2
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig672.3.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig672contigP-wetherbeei_contig672:3072..5949 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size1531
Hectar predicted targeting categoryother localisation
Exons7
Cds size1530
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig672.3.2prot_P-wetherbeei_contig672.3.2Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig672 3072..5949 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186932.298619-CDS-P-wetherbeei_contig672:3071..33161683186932.298619-CDS-P-wetherbeei_contig672:3071..3316Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig672 3072..3316 +
1683186932.3073113-CDS-P-wetherbeei_contig672:3474..35701683186932.3073113-CDS-P-wetherbeei_contig672:3474..3570Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig672 3475..3570 +
1683186932.3157482-CDS-P-wetherbeei_contig672:3843..42461683186932.3157482-CDS-P-wetherbeei_contig672:3843..4246Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig672 3844..4246 +
1683186932.323899-CDS-P-wetherbeei_contig672:4366..44741683186932.323899-CDS-P-wetherbeei_contig672:4366..4474Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig672 4367..4474 +
1683186932.3324888-CDS-P-wetherbeei_contig672:4759..51331683186932.3324888-CDS-P-wetherbeei_contig672:4759..5133Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig672 4760..5133 +
1683186932.3438263-CDS-P-wetherbeei_contig672:5387..55381683186932.3438263-CDS-P-wetherbeei_contig672:5387..5538Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig672 5388..5538 +
1683186932.3518627-CDS-P-wetherbeei_contig672:5796..59491683186932.3518627-CDS-P-wetherbeei_contig672:5796..5949Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig672 5797..5949 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig672.3.2

>prot_P-wetherbeei_contig672.3.2 ID=prot_P-wetherbeei_contig672.3.2|Name=mRNA_P-wetherbeei_contig672.3.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=510bp
RGLQRGRGPAKRRKVQRKKMEERESSQRLPSVPEDFAPEEELSSDVESES
EACLSSSHMPTMAELKRLALSEVQSIEDERARSCTSELKEMKLRWDALAD
IVRASDAKVEQALRVVSLRVKRLRTHAEGLYAVDDALRRLPAGASRAEAE
GTGAEDRRRGDSGSSDRSCSSHGVSSATADEGYDIGSFNTPFSTPPPPPP
LPEYAAARGRKVLAAVPVPAPTPATTPHADGGCYLGRVPMTSAEPRDQPK
HETAAKMARAADRLADAIEDECLKKDLKACPRLIVSGRASSMAEEGIRLL
QRGHAADTRALRAFSAYQEAVRRDREGERAGSGGSDGGSSGGGGGSGSGG
WRSGGRGGLSNGWGSGGDSAGGSNGASGTGDISAICCADASFGGERLFGE
MWLADVHYRMAATRQAEEWGTSSRRMRELCEQMKALELRRRVDTHRLLLR
LVGSSTAGQSSPQLASLPPHEREALAALQAVHLAPGALEHDLRGRSGSDV
DVRRRPSRSP
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mRNA from alignment at P-wetherbeei_contig672:3072..5949+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig672.3.2 ID=mRNA_P-wetherbeei_contig672.3.2|Name=mRNA_P-wetherbeei_contig672.3.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2878bp|location=Sequence derived from alignment at P-wetherbeei_contig672:3072..5949+ (Phaeothamnion wetherbeei SAG_119_79)
CGAGGATTGCAGCGCGGTCGAGGACCTGCTAAACGACGAAAGGTTCAGAG
AAAGAAAATGGAGGAGCGCGAAAGCAGCCAGCGGCTACCGTCCGTGCCGG
AGGACTTCGCGCCGGAGGAGGAGCTCTCGAGCGACGTGGAGAGCGAAAGC
GAAGCTTGTCTTTCCTCGTCTCACATGCCGACCATGGCCGAACTGAAGCG
CCTAGCGCTCAGCGAAGTCCAGAGCATTGAAGATGAGCGTGCCCGGTACG
TACCTGCTCGCAGGGAAGGTCCTTCCGTTGCCTGCAATTTTTATTTTAGC
CGTTTGATTTTGAAACTTGCAATGGCCCATCCAACTCAAGCACTTCAAAC
AATGGAGTATGAGGGGATCTTGACCTTTCTCCTCGGATCTTGGCGTATCG
CAGGAGCTGCACGTCGGAGCTGAAGGAAATGAAGCTTCGTTGGGACGCTC
TCGCCGATATCGTGCGTGCCAGCGACGCCAAGGTCGAGCAAGCCCTACGG
TCAGTTGGGTTGCTGGAGAGTTTCGTGAAGGAGTTTGCCGTTACCGCCGG
CAAGCTAGTGGCTTCCCCGGCACTATTTATCCCTTTGAAGCTGCAGCATA
CCTCAAACCAACTCATCAGCTTTCTTACGATTTCGTTGAGCGGTGTTCTT
TCACTCCCTTGACCTTTCTCCCCTCACCGATCTCGACAGCATCGGCAACG
ATCCCCTTTGCATCCTCCCCCAGTGTTGGTAACCGCATTCTCTCTCCCTT
TCTCTCTCGCATGCGCGCGCAGTGTTGTCTCCCTTCGCGTCAAGCGGCTA
CGGACGCACGCCGAGGGACTCTACGCGGTCGACGACGCGCTGCGGCGGCT
GCCGGCGGGCGCCTCCCGCGCAGAGGCCGAGGGCACCGGCGCGGAGGACC
GCCGCCGTGGTGACAGCGGTTCCTCCGATCGCAGTTGCAGCAGCCATGGC
GTCAGCAGCGCGACTGCCGACGAAGGCTACGACATCGGCAGTTTCAACAC
GCCGTTTTCCACGCCGCCGCCGCCACCTCCGCTGCCGGAGTATGCAGCCG
CGCGGGGCCGAAAGGTGCTGGCAGCCGTGCCCGTGCCGGCACCGACGCCG
GCGACGACGCCGCATGCTGATGGAGGATGCTACCTCGGCCGGGTGCCGAT
GACGTCGGCGGAGCCACGAGATCAGGTTAGGTGTGCAATGAGGCCGTTAT
TTCTGGACTCTGCGTTATTTCTTGCAATCGGTTCAAACATTTCCGGAACT
AATCCTCTATTTCATATTTCCTTCTGCGCTGTTGGACCGGCTCAGCCGAA
GCACGAGACCGCCGCAAAGATGGCGCGCGCCGCGGACCGCCTTGCGGACG
CCATCGAGGACGAGTGCCTCAAAAAGGACTTAAAGGCATGTCCGCGCCTC
ATCGTGAGACGGATTTCTCCTTTCTCTGGAGCCGCCGCGCAAGCCAGCAC
ATTGGCGCCTCTGTCTTCTTTTTATCCTAAATCTCTCTCGCTGTCGCAAA
TGGCGGCACTGCGATGAACAGTCACTAGCAGTTCGGGCGGCAGGTTTCCC
ACAAACTCTTTTCTTCAATTCGGCCCCCCCGACTGCACGCTTTTGAATTC
GTTCTCGTCCCGTCTCGCTCTTCTGCTCCTCTTCCATTGCTTGCGCGGGC
CGCGCTTTTCTACTCACTGCCTATCTCAACTGGGGCAGGTGTCTGGGCGT
GCGTCGTCCATGGCGGAGGAAGGGATCCGACTGCTGCAGCGAGGGCACGC
CGCCGACACTCGGGCGCTGCGCGCCTTCTCCGCCTATCAGGAGGCGGTGC
GGCGCGACCGCGAAGGGGAGCGGGCCGGCAGTGGTGGCAGCGACGGCGGC
AGCAGCGGCGGGGGTGGCGGCAGCGGTAGCGGCGGGTGGCGCAGCGGGGG
CCGCGGCGGCTTGTCGAATGGTTGGGGCAGCGGCGGCGATAGTGCCGGCG
GCAGCAATGGCGCGAGTGGAACTGGCGACATCAGCGCTATCTGCTGCGCC
GACGCCAGCTTCGGAGGCGAGAGGCTCTTCGGAGAGATGTGGCTCGCCGA
TGTTCACTACAGGTAAGCCTTCGAGTGGGTTTGATGCGGTACTGTTGTTC
ACTTTTGGTTCACTGGTGGCAACTGTTGTTCACTTTTAGTTCACTGGTGG
CAAAGAGACGCCACTTCTGTTTAGAACGGCGTGGCTTTGCAATTCGTCAT
TGCGCTTCTGGTCGTTGCTGCCACGGCCATCTACCGTTCGTCACGCCGTA
TCTTCCCCTTCCATTTGCTTCGCCACCTTCGTATTCTGCGCCACCCCTCG
CGGCTGGCAATCGCAGGATGGCGGCGACGAGGCAGGCGGAGGAATGGGGC
ACGTCGAGCCGTCGCATGCGGGAGCTCTGCGAGCAGATGAAGGCGCTTGA
GCTGCGCCGCCGCGTCGACACCCACCGCTTGCTGCTGCGCCTCGTCGGCA
GCAGCACCGCCGGCCAGGTGCGCCCGCCCGCCAATCCGCTGCGCCTTGCC
CGCTCCATGTTCATCTCTTCAGGAGTTGTTATTTACCCTGCATTTACCGG
TTTGAGGGTCGTATTGCCTTGCCTGTTGGTGCTGTCCGGTTTGGCTAATG
GCTGCTCAGAAGGGCCGTCTTTTCTTTCGTTTTGCGCCCCACCTTCGTGT
GGATTCCACCGGAGATCGAAATGGTTCTGCCGCCGTTGTCAATAGCCGCC
GCTGCTCTCTCTTTCTTTCCTTCAGAGCTCGCCGCAGCTGGCGTCGCTGC
CCCCGCACGAGCGGGAGGCGCTGGCGGCGCTGCAAGCGGTCCACCTCGCG
CCGGGGGCGCTGGAGCACGACCTCCGGGGCCGTTCCGGAAGCGACGTAGA
CGTGCGGCGGCGGCCCAGCCGGAGCCCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig672:3072..5949+

>mRNA_P-wetherbeei_contig672.3.2 ID=mRNA_P-wetherbeei_contig672.3.2|Name=mRNA_P-wetherbeei_contig672.3.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1530bp|location=Sequence derived from alignment at P-wetherbeei_contig672:3072..5949+ (Phaeothamnion wetherbeei SAG_119_79)
CGAGGATTGCAGCGCGGTCGAGGACCTGCTAAACGACGAAAGGTTCAGAG
AAAGAAAATGGAGGAGCGCGAAAGCAGCCAGCGGCTACCGTCCGTGCCGG
AGGACTTCGCGCCGGAGGAGGAGCTCTCGAGCGACGTGGAGAGCGAAAGC
GAAGCTTGTCTTTCCTCGTCTCACATGCCGACCATGGCCGAACTGAAGCG
CCTAGCGCTCAGCGAAGTCCAGAGCATTGAAGATGAGCGTGCCCGGAGCT
GCACGTCGGAGCTGAAGGAAATGAAGCTTCGTTGGGACGCTCTCGCCGAT
ATCGTGCGTGCCAGCGACGCCAAGGTCGAGCAAGCCCTACGTGTTGTCTC
CCTTCGCGTCAAGCGGCTACGGACGCACGCCGAGGGACTCTACGCGGTCG
ACGACGCGCTGCGGCGGCTGCCGGCGGGCGCCTCCCGCGCAGAGGCCGAG
GGCACCGGCGCGGAGGACCGCCGCCGTGGTGACAGCGGTTCCTCCGATCG
CAGTTGCAGCAGCCATGGCGTCAGCAGCGCGACTGCCGACGAAGGCTACG
ACATCGGCAGTTTCAACACGCCGTTTTCCACGCCGCCGCCGCCACCTCCG
CTGCCGGAGTATGCAGCCGCGCGGGGCCGAAAGGTGCTGGCAGCCGTGCC
CGTGCCGGCACCGACGCCGGCGACGACGCCGCATGCTGATGGAGGATGCT
ACCTCGGCCGGGTGCCGATGACGTCGGCGGAGCCACGAGATCAGCCGAAG
CACGAGACCGCCGCAAAGATGGCGCGCGCCGCGGACCGCCTTGCGGACGC
CATCGAGGACGAGTGCCTCAAAAAGGACTTAAAGGCATGTCCGCGCCTCA
TCGTGTCTGGGCGTGCGTCGTCCATGGCGGAGGAAGGGATCCGACTGCTG
CAGCGAGGGCACGCCGCCGACACTCGGGCGCTGCGCGCCTTCTCCGCCTA
TCAGGAGGCGGTGCGGCGCGACCGCGAAGGGGAGCGGGCCGGCAGTGGTG
GCAGCGACGGCGGCAGCAGCGGCGGGGGTGGCGGCAGCGGTAGCGGCGGG
TGGCGCAGCGGGGGCCGCGGCGGCTTGTCGAATGGTTGGGGCAGCGGCGG
CGATAGTGCCGGCGGCAGCAATGGCGCGAGTGGAACTGGCGACATCAGCG
CTATCTGCTGCGCCGACGCCAGCTTCGGAGGCGAGAGGCTCTTCGGAGAG
ATGTGGCTCGCCGATGTTCACTACAGGATGGCGGCGACGAGGCAGGCGGA
GGAATGGGGCACGTCGAGCCGTCGCATGCGGGAGCTCTGCGAGCAGATGA
AGGCGCTTGAGCTGCGCCGCCGCGTCGACACCCACCGCTTGCTGCTGCGC
CTCGTCGGCAGCAGCACCGCCGGCCAGAGCTCGCCGCAGCTGGCGTCGCT
GCCCCCGCACGAGCGGGAGGCGCTGGCGGCGCTGCAAGCGGTCCACCTCG
CGCCGGGGGCGCTGGAGCACGACCTCCGGGGCCGTTCCGGAAGCGACGTA
GACGTGCGGCGGCGGCCCAGCCGGAGCCCG
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