mRNA_P-wetherbeei_contig6719.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6719.1.1
Unique NamemRNA_P-wetherbeei_contig6719.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6719.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6719contigP-wetherbeei_contig6719:740..2746 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size2008
Hectar predicted targeting categoryother localisation
Exons1
Cds size1506
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186932.1853156-CDS-P-wetherbeei_contig6719:739..22451683186932.1853156-CDS-P-wetherbeei_contig6719:739..2245Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6719 740..2245 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186932.1976817-UTR-P-wetherbeei_contig6719:2245..27461683186932.1976817-UTR-P-wetherbeei_contig6719:2245..2746Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6719 2246..2746 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6719.1.1prot_P-wetherbeei_contig6719.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6719 740..2245 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6719.1.1

>prot_P-wetherbeei_contig6719.1.1 ID=prot_P-wetherbeei_contig6719.1.1|Name=mRNA_P-wetherbeei_contig6719.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=502bp
MASEDGHDVISAAGPATATPILAAPGLAPDGMPLPSPSAASAEVSTAPGG
AGSPSYFSWPPAAPQAASNNSSSHSAASSGSGGGSGSAGAPLAGGNAAGD
ASQYGDLDERDMVAELRHLLFETQSPLPAAGQSADIRAAAAVRLAAAQRG
AEPDALVPPWERAASPAAGEAMPMDCSNSGPSDMGSGGGGGGGGRANGGF
ASGERSGGGGGGSGVAGVAADGGANHDGADGGSGGNGETGGLVRGRKRSL
EHLYFPPGSGGDGGGTNVSSHTAGAGTSHGETSSMTLQPAAAEEAAAEES
GVLGPPQRRPRQDSPERRPDAGAAALPAAAVALAPDGGEAAAAAAGDASA
SAAAMTSSPAPAAAPAAAAAVDSRVSEAVRWHSLPAGVAAAMQAAAADGG
STARGDAAFQAAAAAAAAAGGGADGHGGTLLQAPWLTASRSSEGLEIDRL
GSLESLAGLSHDVFDGLSHGFSSFGAVSADSDLAVRMTAAAAAARGGHGG
QG
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mRNA from alignment at P-wetherbeei_contig6719:740..2746-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6719.1.1 ID=mRNA_P-wetherbeei_contig6719.1.1|Name=mRNA_P-wetherbeei_contig6719.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2007bp|location=Sequence derived from alignment at P-wetherbeei_contig6719:740..2746- (Phaeothamnion wetherbeei SAG_119_79)
GGGGAACAAGAGCCTTCAAAACGAAAGGCAGCCCTACGCCTTCATTGCGC
CTTTTCGTGGCCTTTACCACGCTGGTCGACATTGCACGCGCGTCGAGGGA
CCAAGGTTGTCTCTTTCACCCTCCCCTTTTTCCTAAGCAAGTTTTTCGAG
CCGCGCTGCCGCTGCAGATCCGGTAATCAACCCGAAGCTTCTCCAACTTC
AGCCTCTAGGCAACATTTGCGGAACTGCGTGCTGACATTGTCCCAGGTTG
TGGTCAGGGGAAAGTCAACTCATTCTACTTTCTCCATACACGCGGCTTTG
GCGACCTTGCGATGTCCATAATGGGCAAAAAGGTGCTTTGTCGCACGTAG
CACGAGCCTGAAACGCCGTGTAGTCGACGCTGGCAGGGTTTGTTCGCGCT
TGAGGGCATTGCATGGAGGGCTGCGACGGGGCACCTCCGGCGGCAGGGAT
TGTGGCGGAAACCTGCAAAAGGCTCGCCGCGTAGGGTGTGGAAGTGTTTT
GATGGCCTCTGAAGACGGCCATGACGTCATTTCCGCAGCTGGTCCTGCGA
CGGCGACACCGATACTGGCGGCGCCAGGGCTCGCTCCTGACGGCATGCCC
CTGCCGTCACCTTCGGCCGCTTCTGCAGAAGTCTCCACCGCGCCCGGTGG
CGCAGGCAGTCCATCCTACTTCTCGTGGCCTCCCGCAGCACCGCAGGCGG
CGAGCAACAACAGCAGCAGCCACAGCGCAGCAAGTAGTGGCAGCGGCGGC
GGCAGCGGCAGTGCCGGCGCACCTCTCGCAGGCGGGAATGCTGCTGGCGA
CGCCTCGCAGTACGGCGACCTCGACGAGCGAGACATGGTCGCGGAGTTGC
GCCACCTGCTGTTCGAGACGCAGTCGCCGCTACCCGCGGCCGGCCAATCC
GCCGATATCAGGGCCGCGGCCGCCGTCCGCCTGGCGGCGGCACAGAGGGG
CGCGGAGCCGGACGCGCTCGTGCCGCCGTGGGAGCGAGCCGCGAGCCCGG
CAGCGGGCGAAGCGATGCCCATGGACTGCAGCAACAGCGGCCCCAGCGAC
ATGGGCAGCGGCGGTGGCGGCGGCGGCGGCGGCAGAGCCAACGGCGGCTT
TGCCAGTGGCGAGCGTAGTGGCGGCGGAGGCGGCGGCAGCGGCGTTGCTG
GCGTTGCGGCCGACGGAGGCGCCAACCACGATGGCGCTGATGGCGGAAGC
GGCGGCAACGGCGAAACTGGCGGGTTGGTTCGAGGTCGCAAGCGGTCTCT
CGAGCACCTGTATTTCCCGCCCGGCAGCGGAGGCGACGGCGGTGGCACGA
ACGTTAGTAGCCATACCGCTGGCGCTGGCACAAGCCACGGTGAGACTTCC
TCCATGACGCTGCAACCTGCAGCAGCGGAAGAGGCGGCGGCGGAAGAGTC
GGGGGTGCTCGGGCCCCCACAGCGGCGACCGCGGCAGGACAGTCCTGAAA
GACGTCCTGACGCCGGCGCCGCTGCTCTTCCAGCAGCAGCCGTTGCCCTG
GCCCCTGACGGCGGCGAAGCTGCTGCAGCGGCTGCCGGCGACGCGTCTGC
GTCTGCCGCCGCCATGACCTCGTCGCCGGCTCCTGCAGCGGCTCCTGCAG
CTGCCGCCGCCGTCGACTCTCGCGTCAGCGAGGCGGTGCGGTGGCATTCC
CTGCCGGCAGGTGTCGCCGCCGCCATGCAAGCGGCCGCTGCTGACGGCGG
CAGCACCGCTCGCGGAGACGCGGCTTTCCAGGCCGCTGCTGCAGCGGCCG
CCGCCGCCGGCGGCGGCGCAGATGGTCACGGCGGTACGCTGCTGCAGGCA
CCGTGGCTGACAGCATCCCGCTCTTCGGAGGGGCTCGAAATCGACCGGCT
GGGAAGCCTCGAATCGCTGGCGGGGCTATCGCACGATGTATTCGACGGCC
TTTCGCACGGGTTCTCCAGCTTCGGCGCCGTCTCCGCTGATTCTGACCTG
GCGGTTCGCATGACGGCCGCCGCCGCGGCCGCCCGCGGCGGCCATGGCGG
CCAGGGT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6719:740..2746-

>mRNA_P-wetherbeei_contig6719.1.1 ID=mRNA_P-wetherbeei_contig6719.1.1|Name=mRNA_P-wetherbeei_contig6719.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1506bp|location=Sequence derived from alignment at P-wetherbeei_contig6719:740..2746- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCCTCTGAAGACGGCCATGACGTCATTTCCGCAGCTGGTCCTGCGAC
GGCGACACCGATACTGGCGGCGCCAGGGCTCGCTCCTGACGGCATGCCCC
TGCCGTCACCTTCGGCCGCTTCTGCAGAAGTCTCCACCGCGCCCGGTGGC
GCAGGCAGTCCATCCTACTTCTCGTGGCCTCCCGCAGCACCGCAGGCGGC
GAGCAACAACAGCAGCAGCCACAGCGCAGCAAGTAGTGGCAGCGGCGGCG
GCAGCGGCAGTGCCGGCGCACCTCTCGCAGGCGGGAATGCTGCTGGCGAC
GCCTCGCAGTACGGCGACCTCGACGAGCGAGACATGGTCGCGGAGTTGCG
CCACCTGCTGTTCGAGACGCAGTCGCCGCTACCCGCGGCCGGCCAATCCG
CCGATATCAGGGCCGCGGCCGCCGTCCGCCTGGCGGCGGCACAGAGGGGC
GCGGAGCCGGACGCGCTCGTGCCGCCGTGGGAGCGAGCCGCGAGCCCGGC
AGCGGGCGAAGCGATGCCCATGGACTGCAGCAACAGCGGCCCCAGCGACA
TGGGCAGCGGCGGTGGCGGCGGCGGCGGCGGCAGAGCCAACGGCGGCTTT
GCCAGTGGCGAGCGTAGTGGCGGCGGAGGCGGCGGCAGCGGCGTTGCTGG
CGTTGCGGCCGACGGAGGCGCCAACCACGATGGCGCTGATGGCGGAAGCG
GCGGCAACGGCGAAACTGGCGGGTTGGTTCGAGGTCGCAAGCGGTCTCTC
GAGCACCTGTATTTCCCGCCCGGCAGCGGAGGCGACGGCGGTGGCACGAA
CGTTAGTAGCCATACCGCTGGCGCTGGCACAAGCCACGGTGAGACTTCCT
CCATGACGCTGCAACCTGCAGCAGCGGAAGAGGCGGCGGCGGAAGAGTCG
GGGGTGCTCGGGCCCCCACAGCGGCGACCGCGGCAGGACAGTCCTGAAAG
ACGTCCTGACGCCGGCGCCGCTGCTCTTCCAGCAGCAGCCGTTGCCCTGG
CCCCTGACGGCGGCGAAGCTGCTGCAGCGGCTGCCGGCGACGCGTCTGCG
TCTGCCGCCGCCATGACCTCGTCGCCGGCTCCTGCAGCGGCTCCTGCAGC
TGCCGCCGCCGTCGACTCTCGCGTCAGCGAGGCGGTGCGGTGGCATTCCC
TGCCGGCAGGTGTCGCCGCCGCCATGCAAGCGGCCGCTGCTGACGGCGGC
AGCACCGCTCGCGGAGACGCGGCTTTCCAGGCCGCTGCTGCAGCGGCCGC
CGCCGCCGGCGGCGGCGCAGATGGTCACGGCGGTACGCTGCTGCAGGCAC
CGTGGCTGACAGCATCCCGCTCTTCGGAGGGGCTCGAAATCGACCGGCTG
GGAAGCCTCGAATCGCTGGCGGGGCTATCGCACGATGTATTCGACGGCCT
TTCGCACGGGTTCTCCAGCTTCGGCGCCGTCTCCGCTGATTCTGACCTGG
CGGTTCGCATGACGGCCGCCGCCGCGGCCGCCCGCGGCGGCCATGGCGGC
CAGGGT
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