mRNA_P-wetherbeei_contig6717.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6717.1.1
Unique NamemRNA_P-wetherbeei_contig6717.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6717.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6717contigP-wetherbeei_contig6717:2..1618 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1178
Hectar predicted targeting categorychloroplast
Exons3
Cds size645
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186932.0871096-UTR-P-wetherbeei_contig6717:1..3391683186932.0871096-UTR-P-wetherbeei_contig6717:1..339Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6717 2..339 -
1683186932.1320143-UTR-P-wetherbeei_contig6717:1423..16181683186932.1320143-UTR-P-wetherbeei_contig6717:1423..1618Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6717 1424..1618 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186932.0986695-CDS-P-wetherbeei_contig6717:339..5091683186932.0986695-CDS-P-wetherbeei_contig6717:339..509Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6717 340..509 -
1683186932.1093934-CDS-P-wetherbeei_contig6717:767..8581683186932.1093934-CDS-P-wetherbeei_contig6717:767..858Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6717 768..858 -
1683186932.1211073-CDS-P-wetherbeei_contig6717:1039..14231683186932.1211073-CDS-P-wetherbeei_contig6717:1039..1423Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6717 1040..1423 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6717.1.1prot_P-wetherbeei_contig6717.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6717 340..1423 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6717.1.1

>prot_P-wetherbeei_contig6717.1.1 ID=prot_P-wetherbeei_contig6717.1.1|Name=mRNA_P-wetherbeei_contig6717.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=215bp
MAVVVACLFGVLLTAMANAAFLGPMSPSSILPVPISGGIELLDTIVAIHP
KGFLNALVHKEFLPNFLETRNGVPVLEVQRPDDEPRRRYLTYIVLTKTFI
GSIRAHNTKTAEVLSRHDDGFVYREMQEVTGFPYIQGLSLETTWHVQEVP
SDNGFRSRIRVSTKVALIKEVSFVGGKIKSAIAQGAAAEARAMSQAVVDF
CTAAPAVPDVLPVS*
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mRNA from alignment at P-wetherbeei_contig6717:2..1618-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6717.1.1 ID=mRNA_P-wetherbeei_contig6717.1.1|Name=mRNA_P-wetherbeei_contig6717.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1617bp|location=Sequence derived from alignment at P-wetherbeei_contig6717:2..1618- (Phaeothamnion wetherbeei SAG_119_79)
AAAATGGAAGGGGACAGAAAACGGCCCAAAGCGATGCGTAGGAACAGCGC
TCAATAGGCATTCCAGCCATGTGCTGCTTCGTACGGAGCTCTTCTCTTCT
CCAAAAAAATCGCAATGATGTGTTTGAACCAGCGCTGCGTCCGTCACTCC
AAAAGCGGTACAGCGCGGAAATCTTGAGTCGGCACACCACCCCGCATGGC
TGTCGTCGTCGCCTGCCTCTTTGGAGTTCTCTTAACCGCTATGGCAAATG
CCGCGTTTCTTGGCCCCATGTCGCCTTCGAGCATACTGCCCGTGCCCATA
AGTGGTGGCATCGAGCTGCTGGACACAATCGTTGCGATTCATCCTAAGGG
CTTTCTCAATGCTCTCGTGCACAAGGAATTCCTACCAAACTTCCTGGAGA
CGCGAAATGGCGTTCCAGTGTTGGAGGTGCAAAGGCCAGACGACGAGCCG
CGACGTCGCTACCTGACGTACATCGTACTCACCAAAACGTTCATCGGCAG
TATTCGCGCCCATAACACCAAGACAGCTGAGGTTCTCTCGCGCCATGACG
ACGGCTTTGTCTATCGCGAAATGCAGGAGGTGCGCACCCCCGCAGCCGTG
CAATCATTGGGCAATTCAGGCTTTCACGAACGACAACGAAGTTATGTGGA
AATATTCCACCCGAAGCTTTTCTAGCTTTCATCTTGCCGTTCAACTCGCT
TTACCGTGAACGCTTACTACCATCTAGGCCGCCTATTTCATTCCGAATCT
CACGTGGCAGGTTACAGGTTTCCCGTACATCCAGGGCCTCTCGCTCGAGA
CGACGTGGCATGTCCAGGAGGTGCCCAGCGATAACGGTTTTCGCAGTCGA
AGTGAGAAGATCTCGAGCTCCTTTTGGAATGAGGCACCGGAGGAGGTCCT
TGGTACAGTTTTTCGGCCACTGCTGGTACCTTGTCGATAAGTCTAAAAAC
AAATCTTAATAACAGGAACTCAAGGAAGTCGTTCGGGGGCACGTTTCTAT
CTGACGCGCGGGGTCGAGGCCGTTAAACACCGCAGCTCGCGATTTCTCAC
GCTGGCCTCAACTGACCGAACGACGAATGGACGTAACCGCGGCTGCTTCT
CCATCGCAGTTAGGGTCAGCACCAAGGTGGCTTTGATCAAGGAGGTGTCT
TTCGTCGGCGGGAAAATTAAGAGCGCCATTGCTCAGGGCGCTGCCGCCGA
GGCGCGCGCTATGTCCCAGGCAGTTGTCGACTTTTGCACGGCGGCCCCAG
CGGTGCCGGACGTCCTTCCTGTCTCATAGCCTGTTGCCTCTCTGTTTATA
GCGCGGGTCGTCGCAGCAATGTGCAACAGCTTTGTCTAGGGCGGGTCGTC
GTACCGCTGTGCGTCATGACTTTTGGAATGGCATGGCTTCGGTGGGAAGA
AACTTATGCAGGAGGTCGAAATCGTTGGGGGCCGGGAGGGAATGTGTATT
CACCTGGGCTTGGGCAAAGGGAGAACCAACGGGCAGCGCAGCAAGTCATT
TTGAGAGGTACAATATAATGTGTGAGGGGCGGCGCCCGCTTCGAGGGAAG
TCCAGCTGGGCATGGAGCGCCGGCCTGCAGGAAGAATCCTACCGACGCAG
CGGTGTTACCTTAGTTC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6717:2..1618-

>mRNA_P-wetherbeei_contig6717.1.1 ID=mRNA_P-wetherbeei_contig6717.1.1|Name=mRNA_P-wetherbeei_contig6717.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=645bp|location=Sequence derived from alignment at P-wetherbeei_contig6717:2..1618- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCTGTCGTCGTCGCCTGCCTCTTTGGAGTTCTCTTAACCGCTATGGC
AAATGCCGCGTTTCTTGGCCCCATGTCGCCTTCGAGCATACTGCCCGTGC
CCATAAGTGGTGGCATCGAGCTGCTGGACACAATCGTTGCGATTCATCCT
AAGGGCTTTCTCAATGCTCTCGTGCACAAGGAATTCCTACCAAACTTCCT
GGAGACGCGAAATGGCGTTCCAGTGTTGGAGGTGCAAAGGCCAGACGACG
AGCCGCGACGTCGCTACCTGACGTACATCGTACTCACCAAAACGTTCATC
GGCAGTATTCGCGCCCATAACACCAAGACAGCTGAGGTTCTCTCGCGCCA
TGACGACGGCTTTGTCTATCGCGAAATGCAGGAGGTTACAGGTTTCCCGT
ACATCCAGGGCCTCTCGCTCGAGACGACGTGGCATGTCCAGGAGGTGCCC
AGCGATAACGGTTTTCGCAGTCGAATTAGGGTCAGCACCAAGGTGGCTTT
GATCAAGGAGGTGTCTTTCGTCGGCGGGAAAATTAAGAGCGCCATTGCTC
AGGGCGCTGCCGCCGAGGCGCGCGCTATGTCCCAGGCAGTTGTCGACTTT
TGCACGGCGGCCCCAGCGGTGCCGGACGTCCTTCCTGTCTCATAG
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