mRNA_P-wetherbeei_contig6707.1.2 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6707.1.2
Unique NamemRNA_P-wetherbeei_contig6707.1.2
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig6707.1.2 vs. uniprot
Match: A0A6H5KHD4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHD4_9PHAE)

HSP 1 Score: 90.1 bits (222), Expect = 1.090e-14
Identity = 131/361 (36.29%), Postives = 170/361 (47.09%), Query Frame = 3 
Query:  438 PSLRLGEAHDARGWPKLVGVQFVAGSSLSRNSKVRHGEKVTVALEG-GKSAFSQSAAGGALLAAVASGXXXXXXXXXXXXXXXXXXXXXXXXXXSAKGKAPMKQPGAAAAEHALKMVHVRWAAAGGVEGRLPRDVTAFLTPLLQAGHVAVSGRTAGDLSTVSIFTEVPLTLHFEVHRSLFDIDPRDPLRECAYRLLHFARTGVVERPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSRKSDAKRAKTAFSAGXXXXXXXXXSVDLAEDDTAEGDEEVAGTDAEAEEEELAKEMTELTALCAEDGAHVAALPAADDPPQ-LRGISLRHYQRQALAWMLSREEPRLITRE 1514
            P+ R  EA    GWPKLVG ++V G ++S+ S +++ E+VT+  EG G S+ S   A G       + XXXXXXXXXXXXXXXXXXXXXXXXXX   G+      GA      +  +  R  + G VEGRLPR+V AFL PLLQ G          DL  +  F EVPL L  E+   LF +DP + L   AY LL FA TG +E+                                             K+D ++A+   +     XXXXXX                        EE+L +   + T LC         +P A DP   + G++LR YQRQALAWM+ RE+ R +T E
Sbjct:  155 PAARNKEA----GWPKLVGQRWVTGYTISKGS-MKYREQVTIISEGSGLSSRSSPPAQGKGNKGRGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXRFGRPKASSAGA------MSNILFR-GSTGRVEGRLPREVCAFLAPLLQEGLAKAHAEAVCDLPGLGKFAEVPLMLSIEIEEGLFALDPDEELYRSAYCLLQFAHTGHIEQEQPKSQQAAAAAA-----------------------------EKGKADHQQAERTLAKEERNXXXXXXXXXXX-----------------VREEDLKELYNDETQLC--------EMPEARDPRLFVDGLALRRYQRQALAWMIQREKKRYVTEE 449
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BLAST of mRNA_P-wetherbeei_contig6707.1.2 vs. uniprot
Match: A0A836CF42_9STRA (SNF2 family N-terminal domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CF42_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 4.520e-12
Identity = 92/242 (38.02%), Postives = 114/242 (47.11%), Query Frame = 3 
Query:  771 ALKMVHVRWAAAGGVEGRLPRDVTAFLTPLLQAGHVAVSGRTAGDLSTVSIFTEVPLTLHFEVHRSLFDIDP-RDP-LRECAYRLLHFARTGVVERPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSRKSDAKRAKTAFSAGXXXXXXXXXSVDLAEDDTAEGDEEVAGTDAEAEEEELAKEMTELTALCAEDGAHVAALPAADDPPQLRGISLRHYQRQALAWMLSRE 1490
            A    H+R+   GG EGRLP D+   L PLL+AG + ++ R A  +++ + F+ VPL L   V   LF  D  R P L   A++LL F  TG V+                            XXXXXXXXXXXXXXX      A RA  A S                      GDE  AG D    + + A+  + L+ +         ALP A DPPQLRG+SLR YQRQALAWML RE
Sbjct:  223 AAAFAHIRFTTRGGAEGRLPGDLCGALAPLLEAGLMEIAARCALPVASTAHFSRVPLLLRVAVRPGLFAFDAARAPRLSAAAFQLLLFGATGEVD-------------------PGALPPPEAXXXXXXXXXXXXXXXXXXXXKALRAAAAHS----------------------GDE--AGADGAEAKVDAAQVESLLSTM------EPRALPEAPDPPQLRGLSLRRYQRQALAWMLERE 415
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BLAST of mRNA_P-wetherbeei_contig6707.1.2 vs. uniprot
Match: D7FJC4_ECTSI (DNA repair helicase rad5,16, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJC4_ECTSI)

HSP 1 Score: 80.1 bits (196), Expect = 9.780e-12
Identity = 77/237 (32.49%), Postives = 101/237 (42.62%), Query Frame = 3 
Query:  807 GGVEGRLPRDVTAFLTPLLQAGHVAVSGRTAGDLSTVSIFTEVPLTLHFEVHRSLFDIDPRDPLRECAYRLLHFARTGVVERPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSRKSDAKRAKTAFSAGXXXXXXXXXSVDLAEDDTAEGDEEVAGTDAEAEEEELAKEMTELTALCAEDGAHVAALPAADDPPQ-LRGISLRHYQRQALAWMLSREEPRLITRE 1514
            G VEGRLPR+V AFL PLLQ G V        DL  +  F EVPL L  E+   LF ++P + L   AY LL FA TG +E+                                            +  D ++A+   +  XXXXXXXXX                        EE++ +   + T LC         +P A DP   + G++LR YQRQALAWM+ RE+ R +T E
Sbjct:   11 GRVEGRLPREVCAFLAPLLQEGLVKAHAEAVCDLPGLGKFAEVPLMLSIEIEEGLFALEPEEELYRNAYCLLQFAHTGHIEQEQPKSQQAVAAAAE----------------------------KGKADDHQQAEKTLAKXXXXXXXXXXXXXXX-----------------VREEDVKELYDDETQLC--------EMPEARDPRLFVDGLALRRYQRQALAWMIQREKKRYVTEE 194
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6707.1.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KHD4_9PHAE1.090e-1436.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CF42_9STRA4.520e-1238.02SNF2 family N-terminal domain-containing protein n... [more]
D7FJC4_ECTSI9.780e-1232.49DNA repair helicase rad5,16, putative n=1 Tax=Ecto... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6707contigP-wetherbeei_contig6707:133..2616 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FJC4
PFAMsHelicase_C,SNF2_N,zf-C3HC4_3,zf-RING_UBOX
Model size2301
Max annot lvl2759|Eukaryota
KEGG koko:K15173,ko:K15711
KEGG Pathwayko04918,map04918
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.21e-12
EggNOG OGsCOG0553@1|root,KOG1001@2759|Eukaryota
EC2.3.2.27
Descriptionhelicase activity
Cds size1977
COG categoryKL
BRITEko00000,ko00001,ko01000,ko03021,ko03400,ko04121
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186931.427539-UTR-P-wetherbeei_contig6707:132..3231683186931.427539-UTR-P-wetherbeei_contig6707:132..323Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6707 133..323 +
1683186931.4526792-UTR-P-wetherbeei_contig6707:2483..26161683186931.4526792-UTR-P-wetherbeei_contig6707:2483..2616Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6707 2484..2616 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186931.4368124-CDS-P-wetherbeei_contig6707:323..10621683186931.4368124-CDS-P-wetherbeei_contig6707:323..1062Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6707 324..1062 +
1683186931.4447484-CDS-P-wetherbeei_contig6707:1245..24831683186931.4447484-CDS-P-wetherbeei_contig6707:1245..2483Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6707 1246..2483 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6707.1.2prot_P-wetherbeei_contig6707.1.2Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6707 324..2483 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6707.1.2

>prot_P-wetherbeei_contig6707.1.2 ID=prot_P-wetherbeei_contig6707.1.2|Name=mRNA_P-wetherbeei_contig6707.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=659bp
MARDDAIQALSAMGVGRNDDDRKRLLAGAGDDVGIAANHWFDGGEASVLP
AEEVEEVEEVDVVDAPAAADAAASTPRTPIPPPSLRLGEAHDARGWPKLV
GVQFVAGSSLSRNSKVRHGEKVTVALEGGKSAFSQSAAGGALLAAVASGS
GGRGKGKAGAAAMPAKAKGGGANGGSAKGKAPMKQPGAAAAEHALKMVHV
RWAAAGGVEGRLPRDVTAFLTPLLQAGHVAVSGRTAGDLSTVSIFTEVPL
TLHFEVHRSLFDIDPRDPLRECAYRLLHFARTGVVERPPPAAAANGETDG
ASGSAANKGAKPAAGGGGGGGGSSAGGPSSSRKSDAKRAKTAFSAGADDA
DDADDSVDLAEDDTAEGDEEVAGTDAEAEEEELAKEMTELTALCAEDGAH
VAALPAADDPPQLRGISLRHYQRQALAWMLSREEPRLITREAARARLGLA
LERGSSCAVGDGSGGVGNGEGGCSSNGGSSSGGGGGSSGGSDQESAKDGS
GSDAAAAGKVSSAAPQGVVVVTPLVAADAAAEGADGHAGPMHPLWERYVA
GLDSAAGSTNGGGAAGSSSGDGGATSDVAGAEGFLGAASSASPGPKDRAA
PFKYYMNSFSRRYGTRFPSAVESCRGGILADEVSLCVYVLCLQAGKYPGW
FLKNFTDV*
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mRNA from alignment at P-wetherbeei_contig6707:133..2616+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6707.1.2 ID=mRNA_P-wetherbeei_contig6707.1.2|Name=mRNA_P-wetherbeei_contig6707.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2484bp|location=Sequence derived from alignment at P-wetherbeei_contig6707:133..2616+ (Phaeothamnion wetherbeei SAG_119_79)
GCCTCCGCGAGGAAGGAAAGAGCGTCCCTCTTCCTCCTCGAAGAGATAAC
CCTTTTCAAAGTGGCAAAGGCATCACTGTTTCCCTTTTCTCGGCCTGCTC
GACTGAAGCTGATTTCGAAAGTTGACTTCGTGGGAGACGAGCGTCTTGAC
GCGCTCGATTCGAGCGTCGCGCTCGATTCGAGCGTCTTCTCATGGCGCGA
GACGATGCCATTCAGGCCCTGTCAGCCATGGGGGTCGGCCGCAACGACGA
CGATCGCAAAAGGCTCTTGGCGGGAGCGGGAGACGACGTCGGGATCGCCG
CGAACCACTGGTTTGACGGCGGCGAAGCCTCGGTGCTGCCGGCGGAAGAA
GTGGAGGAGGTGGAAGAGGTAGATGTCGTGGACGCTCCTGCTGCAGCCGA
CGCCGCCGCTTCCACACCGAGAACGCCCATCCCGCCGCCGTCGCTTCGCC
TGGGCGAGGCGCACGACGCCCGCGGCTGGCCGAAGCTCGTCGGCGTGCAG
TTCGTCGCCGGCTCGAGCTTGAGCCGCAACAGCAAAGTCCGGCATGGAGA
GAAGGTCACGGTCGCCCTCGAAGGCGGCAAGTCGGCCTTCAGCCAGAGCG
CCGCAGGCGGAGCTCTGCTGGCCGCCGTCGCCAGCGGCAGCGGTGGGCGC
GGGAAGGGAAAGGCGGGGGCGGCAGCGATGCCTGCAAAGGCTAAGGGCGG
TGGGGCCAACGGCGGCAGCGCCAAGGGCAAGGCGCCCATGAAGCAACCTG
GGGCGGCGGCCGCCGAACACGCCCTGAAGATGGTCCACGTGCGGTGGGCG
GCGGCGGGCGGCGTGGAAGGCCGACTGCCGCGGGACGTGACGGCTTTCCT
GACGCCGCTGTTGCAGGCGGGGCACGTGGCGGTCTCCGGCCGCACCGCTG
GTGATCTCTCGACCGTCAGTATTTTCACAGGTGAGATAAGGGAAATTGGG
GAGAAATAGCTTGCTTCGACGCCATTTTTACCGTTCAGGTGGTCACCGAA
GAGCAATTTGTCACCATAGCATCGAGTTACCTGGATAATGTCTTGTTGTT
CTCTTCTGTTCTTCCTAATGCATCACCGGGGCCCCGCAATTTCCTGATTG
CGCTGCCGGGCAGAGGTGCCTCTGACGCTGCACTTCGAGGTCCACCGCAG
CCTCTTCGACATCGACCCGCGCGACCCGCTACGCGAGTGCGCCTATCGCC
TCCTCCACTTTGCCCGCACCGGCGTCGTCGAGCGCCCGCCGCCCGCCGCC
GCCGCCAATGGAGAGACCGACGGGGCCAGCGGTTCCGCCGCCAATAAGGG
AGCAAAGCCTGCTGCTGGTGGCGGCGGTGGCGGCGGAGGGTCGTCAGCGG
GGGGACCTTCTTCGTCCCGCAAGTCTGACGCCAAGCGCGCCAAGACGGCA
TTCAGTGCGGGCGCCGACGACGCCGACGACGCCGACGACTCCGTCGACTT
GGCGGAAGACGACACCGCGGAAGGCGACGAAGAGGTGGCCGGCACCGATG
CCGAGGCTGAAGAGGAAGAGCTGGCGAAGGAGATGACAGAGCTGACGGCG
CTGTGCGCGGAGGACGGCGCACACGTGGCGGCGCTGCCGGCGGCGGACGA
CCCGCCGCAGCTGCGCGGCATCTCGCTCCGCCACTACCAGCGGCAGGCAC
TTGCCTGGATGTTGTCACGCGAGGAGCCCCGCCTCATCACCCGGGAGGCC
GCCCGTGCGCGCCTGGGCCTCGCATTGGAGAGGGGATCTTCCTGTGCCGT
CGGCGACGGCAGTGGCGGCGTCGGGAACGGCGAGGGTGGTTGCAGCAGTA
ACGGTGGCAGCAGCAGCGGCGGTGGCGGTGGCAGCAGCGGTGGTAGCGAC
CAAGAGAGTGCCAAAGATGGCTCCGGCAGTGACGCGGCGGCGGCCGGAAA
GGTGAGTTCTGCGGCGCCGCAAGGCGTCGTCGTCGTGACGCCGCTGGTCG
CAGCAGATGCGGCGGCGGAAGGCGCCGACGGCCACGCCGGCCCGATGCAT
CCTCTGTGGGAGCGATACGTTGCGGGGCTCGACTCAGCCGCCGGCAGCAC
CAACGGCGGCGGCGCCGCCGGGAGCAGCAGCGGTGACGGCGGCGCGACCA
GCGACGTCGCCGGCGCCGAGGGTTTTCTCGGCGCGGCTTCGTCGGCTTCG
CCGGGGCCGAAAGACCGCGCCGCACCGTTCAAGTATTATATGAATTCGTT
CTCGCGGCGATATGGGACCCGGTTCCCGTCGGCGGTGGAGAGTTGCCGGG
GGGGAATTCTGGCGGACGAGGTGAGCCTATGTGTGTACGTTTTGTGTTTG
CAAGCAGGAAAATACCCTGGTTGGTTTTTGAAGAATTTCACGGATGTGTG
ATCGCGAGCTGTCACCGATTGTGGTTTCCGTCCGTTCTCCCCAAGCCCCG
ACTTCCGCTTCTTCATTCCTCTTCGTTCTCGTTGCTGCTTTGCATCAAGC
CGCATGCCCGCGTATTCTATTTCGCATTGCCAGT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6707:133..2616+

>mRNA_P-wetherbeei_contig6707.1.2 ID=mRNA_P-wetherbeei_contig6707.1.2|Name=mRNA_P-wetherbeei_contig6707.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1977bp|location=Sequence derived from alignment at P-wetherbeei_contig6707:133..2616+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGCGAGACGATGCCATTCAGGCCCTGTCAGCCATGGGGGTCGGCCG
CAACGACGACGATCGCAAAAGGCTCTTGGCGGGAGCGGGAGACGACGTCG
GGATCGCCGCGAACCACTGGTTTGACGGCGGCGAAGCCTCGGTGCTGCCG
GCGGAAGAAGTGGAGGAGGTGGAAGAGGTAGATGTCGTGGACGCTCCTGC
TGCAGCCGACGCCGCCGCTTCCACACCGAGAACGCCCATCCCGCCGCCGT
CGCTTCGCCTGGGCGAGGCGCACGACGCCCGCGGCTGGCCGAAGCTCGTC
GGCGTGCAGTTCGTCGCCGGCTCGAGCTTGAGCCGCAACAGCAAAGTCCG
GCATGGAGAGAAGGTCACGGTCGCCCTCGAAGGCGGCAAGTCGGCCTTCA
GCCAGAGCGCCGCAGGCGGAGCTCTGCTGGCCGCCGTCGCCAGCGGCAGC
GGTGGGCGCGGGAAGGGAAAGGCGGGGGCGGCAGCGATGCCTGCAAAGGC
TAAGGGCGGTGGGGCCAACGGCGGCAGCGCCAAGGGCAAGGCGCCCATGA
AGCAACCTGGGGCGGCGGCCGCCGAACACGCCCTGAAGATGGTCCACGTG
CGGTGGGCGGCGGCGGGCGGCGTGGAAGGCCGACTGCCGCGGGACGTGAC
GGCTTTCCTGACGCCGCTGTTGCAGGCGGGGCACGTGGCGGTCTCCGGCC
GCACCGCTGGTGATCTCTCGACCGTCAGTATTTTCACAGAGGTGCCTCTG
ACGCTGCACTTCGAGGTCCACCGCAGCCTCTTCGACATCGACCCGCGCGA
CCCGCTACGCGAGTGCGCCTATCGCCTCCTCCACTTTGCCCGCACCGGCG
TCGTCGAGCGCCCGCCGCCCGCCGCCGCCGCCAATGGAGAGACCGACGGG
GCCAGCGGTTCCGCCGCCAATAAGGGAGCAAAGCCTGCTGCTGGTGGCGG
CGGTGGCGGCGGAGGGTCGTCAGCGGGGGGACCTTCTTCGTCCCGCAAGT
CTGACGCCAAGCGCGCCAAGACGGCATTCAGTGCGGGCGCCGACGACGCC
GACGACGCCGACGACTCCGTCGACTTGGCGGAAGACGACACCGCGGAAGG
CGACGAAGAGGTGGCCGGCACCGATGCCGAGGCTGAAGAGGAAGAGCTGG
CGAAGGAGATGACAGAGCTGACGGCGCTGTGCGCGGAGGACGGCGCACAC
GTGGCGGCGCTGCCGGCGGCGGACGACCCGCCGCAGCTGCGCGGCATCTC
GCTCCGCCACTACCAGCGGCAGGCACTTGCCTGGATGTTGTCACGCGAGG
AGCCCCGCCTCATCACCCGGGAGGCCGCCCGTGCGCGCCTGGGCCTCGCA
TTGGAGAGGGGATCTTCCTGTGCCGTCGGCGACGGCAGTGGCGGCGTCGG
GAACGGCGAGGGTGGTTGCAGCAGTAACGGTGGCAGCAGCAGCGGCGGTG
GCGGTGGCAGCAGCGGTGGTAGCGACCAAGAGAGTGCCAAAGATGGCTCC
GGCAGTGACGCGGCGGCGGCCGGAAAGGTGAGTTCTGCGGCGCCGCAAGG
CGTCGTCGTCGTGACGCCGCTGGTCGCAGCAGATGCGGCGGCGGAAGGCG
CCGACGGCCACGCCGGCCCGATGCATCCTCTGTGGGAGCGATACGTTGCG
GGGCTCGACTCAGCCGCCGGCAGCACCAACGGCGGCGGCGCCGCCGGGAG
CAGCAGCGGTGACGGCGGCGCGACCAGCGACGTCGCCGGCGCCGAGGGTT
TTCTCGGCGCGGCTTCGTCGGCTTCGCCGGGGCCGAAAGACCGCGCCGCA
CCGTTCAAGTATTATATGAATTCGTTCTCGCGGCGATATGGGACCCGGTT
CCCGTCGGCGGTGGAGAGTTGCCGGGGGGGAATTCTGGCGGACGAGGTGA
GCCTATGTGTGTACGTTTTGTGTTTGCAAGCAGGAAAATACCCTGGTTGG
TTTTTGAAGAATTTCACGGATGTGTGA
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